1V8GA

Crystal structure of anthranilate phosphoribosyltransferase (trpd) from thermus thermophilus hb8
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
329
structure length
329
Chain Sequence
MDAVKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLGARGLVVHGEGADELVLGENRVVEVGKGAYALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYVAFLRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords anthranilate phosphoribosyltransferase
publication title Crystal structure of anthranilate phosphoribosyltransferase (TrpD) from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 112
structure length 329
sequence length 329
chains with identical sequence B
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2004-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1v8gA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1v8gA02
4OWSA 4ZOFA 2DSJA 4X5AA 2GVQA 4GKMA 1OTPA 4N5VA 2BPQA 4GA6A 5BYTA 4LHMA 4YEKA 4X5DA 4EADA 4HKMA 5BNEA 4EAFA 4OWVA 2ELCA 2TPTA 4N93A 4N8QA 5BO3A 1BRWA 1KGZA 4X5BA 4GIUA 3QR9A 4ZOKA 3UU1A 1AZYA 3R88A 3QS8A 1GXBA 5BO2A 1V8GA 4OWQA 3QQSA 4MUOA 5EP8A 1O17A 4OWMA 2WK6A 5EY3A 3GBRA 3H5QA 4YI7A 1UOUA 1VQUA 2WK5A 4X5CA 5C2LA 4GA5A 4ZTVA 4GTNA 4XR5A 3TWPA 5C7SA 4X46A 4OWNA 4X58A 4M0RA 4IJ1A 5C1RA 4OWOA 2J0FA 4X59A 1ZVWA 1KHDA 4ZOJA 4X5EA 3R6CA 4OWUA 3QSAA 4YYYA 4GA4A 1ZYKA 1ZXYA
chains in the Genus database with same CATH superfamily
4OWSA 4ZOFA 2DSJA 4X5AA 2GVQA 4GKMA 1OTPA 4N5VA 2BPQA 4GA6A 5BYTA 4LHMA 4YEKA 4X5DA 4EADA 4HKMA 5BNEA 4EAFA 4OWVA 2ELCA 2TPTA 4N93A 4N8QA 5BO3A 1BRWA 1KGZA 4X5BA 4GIUA 3QR9A 4ZOKA 3UU1A 1AZYA 3R88A 3QS8A 1GXBA 5BO2A 1V8GA 4OWQA 3QQSA 4MUOA 5EP8A 1O17A 4OWMA 4F3FC 1RF8B 2WK6A 5EY3A 3GBRA 3H5QA 4YI7A 1RRZA 1UOUA 1VQUA 2WK5A 4X5CA 5C2LA 4GA5A 4ZTVA 4GTNA 4XR5A 3TWPA 5C7SA 4X46A 4OWNA 4X58A 4M0RA 4IJ1A 5C1RA 4OWOA 2J0FA 4X59A 1ZVWA 1KHDA 4ZOJA 4X5EA 3R6CA 4OWUA 3QSAA 4YYYA 4GA4A 1ZYKA 1ZXYA
chains in the Genus database with same CATH topology
4OWSA 4ZOFA 2DSJA 4X5AA 2GVQA 4GKMA 1OTPA 4N5VA 2BPQA 4GA6A 5BYTA 4LHMA 4YEKA 4X5DA 4EADA 4HKMA 5BNEA 4EAFA 4OWVA 2ELCA 2TPTA 4N93A 4N8QA 5BO3A 1BRWA 1KGZA 4X5BA 4GIUA 3QR9A 4ZOKA 3UU1A 1AZYA 3R88A 3QS8A 1GXBA 5BO2A 1V8GA 4OWQA 3QQSA 4MUOA 5EP8A 1O17A 4OWMA 2WK6A 5EY3A 3GBRA 3H5QA 4YI7A 1UOUA 1VQUA 2WK5A 4X5CA 5C2LA 4GA5A 4ZTVA 4GTNA 4XR5A 3TWPA 5C7SA 4X46A 4OWNA 4X58A 4M0RA 4IJ1A 5C1RA 4OWOA 2J0FA 4X59A 1ZVWA 1KHDA 4ZOJA 4X5EA 3R6CA 4OWUA 3QSAA 4YYYA 4GA4A 1ZYKA 1ZXYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OWS A;  4ZOF A;  2DSJ A;  4X5A A;  2GVQ A;  4GKM A;  1OTP A;  4N5V A;  2BPQ A;  4GA6 A;  5BYT A;  4LHM A;  4YEK A;  4X5D A;  4EAD A;  4HKM A;  5BNE A;  4EAF A;  4OWV A;  2ELC A;  2TPT A;  4N93 A;  4N8Q A;  5BO3 A;  1BRW A;  1KGZ A;  4X5B A;  4GIU A;  3QR9 A;  4ZOK A;  3UU1 A;  1AZY A;  3R88 A;  3QS8 A;  1GXB A;  5BO2 A;  1V8G A;  4OWQ A;  3QQS A;  4MUO A;  5EP8 A;  1O17 A;  4OWM A;  2WK6 A;  5EY3 A;  3GBR A;  3H5Q A;  4YI7 A;  1UOU A;  1VQU A;  2WK5 A;  4X5C A;  5C2L A;  4GA5 A;  4ZTV A;  4GTN A;  4XR5 A;  3TWP A;  5C7S A;  4X46 A;  4OWN A;  4X58 A;  4M0R A;  4IJ1 A;  5C1R A;  4OWO A;  2J0F A;  4X59 A;  1ZVW A;  1KHD A;  4ZOJ A;  4X5E A;  3R6C A;  4OWU A;  3QSA A;  4YYY A;  4GA4 A;  1ZYK A;  1ZXY A; 
#chains in the Genus database with same CATH topology
 4OWS A;  4ZOF A;  2DSJ A;  4X5A A;  2GVQ A;  4GKM A;  1OTP A;  4N5V A;  2BPQ A;  4GA6 A;  5BYT A;  4LHM A;  4YEK A;  4X5D A;  4EAD A;  4HKM A;  5BNE A;  4EAF A;  4OWV A;  2ELC A;  2TPT A;  4N93 A;  4N8Q A;  5BO3 A;  1BRW A;  1KGZ A;  4X5B A;  4GIU A;  3QR9 A;  4ZOK A;  3UU1 A;  1AZY A;  3R88 A;  3QS8 A;  1GXB A;  5BO2 A;  1V8G A;  4OWQ A;  3QQS A;  4MUO A;  5EP8 A;  1O17 A;  4OWM A;  4F3F C;  1RF8 B;  2WK6 A;  5EY3 A;  3GBR A;  3H5Q A;  4YI7 A;  1RRZ A;  1UOU A;  1VQU A;  2WK5 A;  4X5C A;  5C2L A;  4GA5 A;  4ZTV A;  4GTN A;  4XR5 A;  3TWP A;  5C7S A;  4X46 A;  4OWN A;  4X58 A;  4M0R A;  4IJ1 A;  5C1R A;  4OWO A;  2J0F A;  4X59 A;  1ZVW A;  1KHD A;  4ZOJ A;  4X5E A;  3R6C A;  4OWU A;  3QSA A;  4YYY A;  4GA4 A;  1ZYK A;  1ZXY A; 
#chains in the Genus database with same CATH homology
 4OWS A;  4ZOF A;  2DSJ A;  4X5A A;  2GVQ A;  4GKM A;  1OTP A;  4N5V A;  2BPQ A;  4GA6 A;  5BYT A;  4LHM A;  4YEK A;  4X5D A;  4EAD A;  4HKM A;  5BNE A;  4EAF A;  4OWV A;  2ELC A;  2TPT A;  4N93 A;  4N8Q A;  5BO3 A;  1BRW A;  1KGZ A;  4X5B A;  4GIU A;  3QR9 A;  4ZOK A;  3UU1 A;  1AZY A;  3R88 A;  3QS8 A;  1GXB A;  5BO2 A;  1V8G A;  4OWQ A;  3QQS A;  4MUO A;  5EP8 A;  1O17 A;  4OWM A;  2WK6 A;  5EY3 A;  3GBR A;  3H5Q A;  4YI7 A;  1UOU A;  1VQU A;  2WK5 A;  4X5C A;  5C2L A;  4GA5 A;  4ZTV A;  4GTN A;  4XR5 A;  3TWP A;  5C7S A;  4X46 A;  4OWN A;  4X58 A;  4M0R A;  4IJ1 A;  5C1R A;  4OWO A;  2J0F A;  4X59 A;  1ZVW A;  1KHD A;  4ZOJ A;  4X5E A;  3R6C A;  4OWU A;  3QSA A;  4YYY A;  4GA4 A;  1ZYK A;  1ZXY A; 
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similar chains in the Genus database (?% sequence similarity)
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