1V8GA

Crystal structure of anthranilate phosphoribosyltransferase (trpd) from thermus thermophilus hb8
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
329
structure length
329
Chain Sequence
MDAVKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLGARGLVVHGEGADELVLGENRVVEVGKGAYALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYVAFLRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords anthranilate phosphoribosyltransferase
publication title Crystal structure of anthranilate phosphoribosyltransferase (TrpD) from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 112
structure length 329
sequence length 329
chains with identical sequence B
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2004-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1v8gA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1v8gA02
1BRWA 4X5AA 3QS8A 3R88A 5C7SA 3QQSA 1ZVWA 3UU1A 1ZXYA 3QR9A 2GVQA 5EP8A 4ZOKA 4GTNA 4N8QA 4ZOFA 4OWOA 4XR5A 5BNEA 1O17A 4GA4A 4X5EA 1KGZA 4IJ1A 4YEKA 4EAFA 4LHMA 3TWPA 5C1RA 4N5VA 3GBRA 2TPTA 5BO2A 5BO3A 4MUOA 3H5QA 4ZOJA 1GXBA 4GA6A 3R6CA 4X59A 4X5DA 4X58A 1ZYKA 2WK5A 1V8GA 4X5BA 3QSAA 1KHDA 4GKMA 4OWNA 5C2LA 1AZYA 2WK6A 1OTPA 4YYYA 2ELCA 4ZTVA 2BPQA 4OWSA 4X5CA 4X46A 4M0RA 4OWUA 2J0FA 4OWMA 4EADA 2DSJA 4N93A 4OWQA 5EY3A 4YI7A 1VQUA 5BYTA 4HKMA 4GA5A 4GIUA 4OWVA 1UOUA
chains in the Genus database with same CATH superfamily
1BRWA 4X5AA 3QS8A 3R88A 5C7SA 3QQSA 1ZVWA 3UU1A 1ZXYA 3QR9A 2GVQA 5EP8A 4ZOKA 1RF8B 4GTNA 4N8QA 4ZOFA 4OWOA 4XR5A 5BNEA 1O17A 4GA4A 4X5EA 1KGZA 4IJ1A 4YEKA 1RRZA 4EAFA 4LHMA 3TWPA 5C1RA 4N5VA 3GBRA 2TPTA 5BO2A 5BO3A 4F3FC 4MUOA 3H5QA 4ZOJA 1GXBA 4GA6A 3R6CA 4X59A 4X5DA 4X58A 1ZYKA 2WK5A 1V8GA 4X5BA 3QSAA 1KHDA 4GKMA 4OWNA 5C2LA 1AZYA 2WK6A 1OTPA 4YYYA 2ELCA 4ZTVA 2BPQA 4OWSA 4X5CA 4X46A 4M0RA 4OWUA 2J0FA 4OWMA 4EADA 2DSJA 4N93A 4OWQA 5EY3A 4YI7A 1VQUA 5BYTA 4HKMA 4GA5A 4GIUA 4OWVA 1UOUA
chains in the Genus database with same CATH topology
1BRWA 4X5AA 3QS8A 3R88A 5C7SA 3QQSA 1ZVWA 3UU1A 1ZXYA 3QR9A 2GVQA 5EP8A 4ZOKA 4GTNA 4N8QA 4ZOFA 4OWOA 4XR5A 5BNEA 1O17A 4GA4A 4X5EA 1KGZA 4IJ1A 4YEKA 4EAFA 4LHMA 3TWPA 5C1RA 4N5VA 3GBRA 2TPTA 5BO2A 5BO3A 4MUOA 3H5QA 4ZOJA 1GXBA 4GA6A 3R6CA 4X59A 4X5DA 4X58A 1ZYKA 2WK5A 1V8GA 4X5BA 3QSAA 1KHDA 4GKMA 4OWNA 5C2LA 1AZYA 2WK6A 1OTPA 4YYYA 2ELCA 4ZTVA 2BPQA 4OWSA 4X5CA 4X46A 4M0RA 4OWUA 2J0FA 4OWMA 4EADA 2DSJA 4N93A 4OWQA 5EY3A 4YI7A 1VQUA 5BYTA 4HKMA 4GA5A 4GIUA 4OWVA 1UOUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BRW A;  4X5A A;  3QS8 A;  3R88 A;  5C7S A;  3QQS A;  1ZVW A;  3UU1 A;  1ZXY A;  3QR9 A;  2GVQ A;  5EP8 A;  4ZOK A;  4GTN A;  4N8Q A;  4ZOF A;  4OWO A;  4XR5 A;  5BNE A;  1O17 A;  4GA4 A;  4X5E A;  1KGZ A;  4IJ1 A;  4YEK A;  4EAF A;  4LHM A;  3TWP A;  5C1R A;  4N5V A;  3GBR A;  2TPT A;  5BO2 A;  5BO3 A;  4MUO A;  3H5Q A;  4ZOJ A;  1GXB A;  4GA6 A;  3R6C A;  4X59 A;  4X5D A;  4X58 A;  1ZYK A;  2WK5 A;  1V8G A;  4X5B A;  3QSA A;  1KHD A;  4GKM A;  4OWN A;  5C2L A;  1AZY A;  2WK6 A;  1OTP A;  4YYY A;  2ELC A;  4ZTV A;  2BPQ A;  4OWS A;  4X5C A;  4X46 A;  4M0R A;  4OWU A;  2J0F A;  4OWM A;  4EAD A;  2DSJ A;  4N93 A;  4OWQ A;  5EY3 A;  4YI7 A;  1VQU A;  5BYT A;  4HKM A;  4GA5 A;  4GIU A;  4OWV A;  1UOU A; 
#chains in the Genus database with same CATH topology
 1BRW A;  4X5A A;  3QS8 A;  3R88 A;  5C7S A;  3QQS A;  1ZVW A;  3UU1 A;  1ZXY A;  3QR9 A;  2GVQ A;  5EP8 A;  4ZOK A;  1RF8 B;  4GTN A;  4N8Q A;  4ZOF A;  4OWO A;  4XR5 A;  5BNE A;  1O17 A;  4GA4 A;  4X5E A;  1KGZ A;  4IJ1 A;  4YEK A;  1RRZ A;  4EAF A;  4LHM A;  3TWP A;  5C1R A;  4N5V A;  3GBR A;  2TPT A;  5BO2 A;  5BO3 A;  4F3F C;  4MUO A;  3H5Q A;  4ZOJ A;  1GXB A;  4GA6 A;  3R6C A;  4X59 A;  4X5D A;  4X58 A;  1ZYK A;  2WK5 A;  1V8G A;  4X5B A;  3QSA A;  1KHD A;  4GKM A;  4OWN A;  5C2L A;  1AZY A;  2WK6 A;  1OTP A;  4YYY A;  2ELC A;  4ZTV A;  2BPQ A;  4OWS A;  4X5C A;  4X46 A;  4M0R A;  4OWU A;  2J0F A;  4OWM A;  4EAD A;  2DSJ A;  4N93 A;  4OWQ A;  5EY3 A;  4YI7 A;  1VQU A;  5BYT A;  4HKM A;  4GA5 A;  4GIU A;  4OWV A;  1UOU A; 
#chains in the Genus database with same CATH homology
 1BRW A;  4X5A A;  3QS8 A;  3R88 A;  5C7S A;  3QQS A;  1ZVW A;  3UU1 A;  1ZXY A;  3QR9 A;  2GVQ A;  5EP8 A;  4ZOK A;  4GTN A;  4N8Q A;  4ZOF A;  4OWO A;  4XR5 A;  5BNE A;  1O17 A;  4GA4 A;  4X5E A;  1KGZ A;  4IJ1 A;  4YEK A;  4EAF A;  4LHM A;  3TWP A;  5C1R A;  4N5V A;  3GBR A;  2TPT A;  5BO2 A;  5BO3 A;  4MUO A;  3H5Q A;  4ZOJ A;  1GXB A;  4GA6 A;  3R6C A;  4X59 A;  4X5D A;  4X58 A;  1ZYK A;  2WK5 A;  1V8G A;  4X5B A;  3QSA A;  1KHD A;  4GKM A;  4OWN A;  5C2L A;  1AZY A;  2WK6 A;  1OTP A;  4YYY A;  2ELC A;  4ZTV A;  2BPQ A;  4OWS A;  4X5C A;  4X46 A;  4M0R A;  4OWU A;  2J0F A;  4OWM A;  4EAD A;  2DSJ A;  4N93 A;  4OWQ A;  5EY3 A;  4YI7 A;  1VQU A;  5BYT A;  4HKM A;  4GA5 A;  4GIU A;  4OWV A;  1UOU A; 
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