1V9FA

Crystal structure of catalytic domain of pseudouridine synthase rlud from escherichia coli
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
250
structure length
250
Chain Sequence
FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ribosomal large subunit pseudouridine synthase D
publication title Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 72
structure length 250
sequence length 250
ec nomenclature ec 5.4.99.23: 23S rRNA pseudouridine(1911/1915/1917) synthase.
pdb deposition date 2004-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1v9fA01
2APOA 1ZE2A 3HAXA 3LWQA 1SGVA 2AUSA 1V9KA 3DH3A 4LABA 1R3FA 2AB4A 1K8WA 1ZL3A 2I82A 1XPIA 3HJYA 1KSKA 2HVYA 3HJWA 3LWOA 1QYUA 1R3EA 3MQKA 1KSLA 3LWVA 3U28A 1PRZA 2EY4A 1ZE1A 4LGTA 3LWPA 3LWRA 2RFKA 2ISTA 3UAIA 1KSVA 1V9FA
chains in the Genus database with same CATH superfamily
2APOA 1ZE2A 1Z2ZA 3HAXA 3LWQA 1SGVA 2AUSA 1V9KA 3DH3A 4LABA 1R3FA 2AB4A 1K8WA 1ZL3A 2I82A 1XPIA 3HJYA 1KSKA 1SI7A 2HVYA 3HJWA 3LWOA 1SZWA 1QYUA 1R3EA 3MQKA 1KSLA 3LWVA 1SB7A 3U28A 1PRZA 2EY4A 1ZE1A 4LGTA 3LWPA 3LWRA 2RFKA 2ISTA 3UAIA 1KSVA 1V9FA
chains in the Genus database with same CATH topology
2APOA 1ZE2A 1Z2ZA 3HAXA 3LWQA 1SGVA 2AUSA 1V9KA 3DH3A 4LABA 1R3FA 2AB4A 1K8WA 1ZL3A 2I82A 1XPIA 3HJYA 1KSKA 1SI7A 2HVYA 3HJWA 3LWOA 1SZWA 1QYUA 1R3EA 3MQKA 1KSLA 3LWVA 1SB7A 3U28A 1PRZA 2EY4A 1ZE1A 4LGTA 3LWPA 3LWRA 2RFKA 2ISTA 3UAIA 1KSVA 1V9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2APO A;  1ZE2 A;  3HAX A;  3LWQ A;  1SGV A;  2AUS A;  1V9K A;  3DH3 A;  4LAB A;  1R3F A;  2AB4 A;  1K8W A;  1ZL3 A;  2I82 A;  1XPI A;  3HJY A;  1KSK A;  2HVY A;  3HJW A;  3LWO A;  1QYU A;  1R3E A;  3MQK A;  1KSL A;  3LWV A;  3U28 A;  1PRZ A;  2EY4 A;  1ZE1 A;  4LGT A;  3LWP A;  3LWR A;  2RFK A;  2IST A;  3UAI A;  1KSV A;  1V9F A; 
#chains in the Genus database with same CATH topology
 2APO A;  1ZE2 A;  1Z2Z A;  3HAX A;  3LWQ A;  1SGV A;  2AUS A;  1V9K A;  3DH3 A;  4LAB A;  1R3F A;  2AB4 A;  1K8W A;  1ZL3 A;  2I82 A;  1XPI A;  3HJY A;  1KSK A;  1SI7 A;  2HVY A;  3HJW A;  3LWO A;  1SZW A;  1QYU A;  1R3E A;  3MQK A;  1KSL A;  3LWV A;  1SB7 A;  3U28 A;  1PRZ A;  2EY4 A;  1ZE1 A;  4LGT A;  3LWP A;  3LWR A;  2RFK A;  2IST A;  3UAI A;  1KSV A;  1V9F A; 
#chains in the Genus database with same CATH homology
 2APO A;  1ZE2 A;  1Z2Z A;  3HAX A;  3LWQ A;  1SGV A;  2AUS A;  1V9K A;  3DH3 A;  4LAB A;  1R3F A;  2AB4 A;  1K8W A;  1ZL3 A;  2I82 A;  1XPI A;  3HJY A;  1KSK A;  1SI7 A;  2HVY A;  3HJW A;  3LWO A;  1SZW A;  1QYU A;  1R3E A;  3MQK A;  1KSL A;  3LWV A;  1SB7 A;  3U28 A;  1PRZ A;  2EY4 A;  1ZE1 A;  4LGT A;  3LWP A;  3LWR A;  2RFK A;  2IST A;  3UAI A;  1KSV A;  1V9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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