1VAOA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase
Total Genus 170
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
555
structure length
550
Chain Sequence
b'EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
molecule tags Flavoenzyme
total genus 170
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1vaoA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1vaoA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1vaoA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1vaoA03
2VAOA 2E3TA 3DQ0A 3ETRB 4MLAA 1E8FA 3AM9A 1DIIA 3D2DA 4OALA 3TSJA 3DEDA 1AHUA 1WVFA 1FO4A 3KJMA 4O95A 3LLBA 4PVKA 1F0XA 2BVFA 1FFVC 5FXEA 5AE3A 4XLOA 3EUB3 2R8DA 3D2HA 3NVWB 3S1DA 2EXRA 4PZFA 1W1RA 1W1SA 2R2ZA 2W55A 4BBYA 1QLTA 2Q4WA 3FW7A 2GQTA 3SR6B 1JROA 3NS1B 2O3GA 4PWBA 4PVEA 3NRZB 3W8XA 1WVEA 1DIQA 1W1KA 2I0KA 2VFUA 2P13A 2Q85A 1VDVA 3LAEA 1ZXIC 2GQUA 2RK5A 1E8HA 2QKNA 2AXRA 3TX1A 3JS8A 1N5XA 5G5GB 1UXYA 5AE2A 1N61C 1N62C 4BC7A 3VTEA 3B9JB 2BVHA 1AHVA 1DZNA 1VAOA 1W1LA 5AE1A 1ZR6A 1W1JA 1W1MA 4PVJA 3W8ZA 2PLSA 3D2JA 1E0YA 3TSHA 3FW9A 4JB1A 4EC3A 3C0PA 2QPMA 5FXPA 2VFSA 4HG0A 3GSYA 1W1QA 3S1EA 2VFTA 2BVGA 1V97A 3NVVB 3NVZB 1QLUA 4PWCA 2W3RA 1N5WC 2NQWA 3FWAA 2W3SA 1E8GA 4PVHA 2P3HA 1SB3B 5D79A 3S1FA 1RM6B 1JRPA 5HHZA 3FW8A 4PYTA 4ML8A 4JAYA 5G5HB 2YVSA 5HQXA 3BW7A 2W54A 4UD8A 1MBTA 5FXFA 1MBBA 3HRDC 3S1CA 5ADZA 1I19A 1AHZA 4ZOHB 2VFVA 1W1OA 4BC9A 4DNSA 3I99A 1N63C 5HMRA 3W8WA 2VFRA 1N60C 1T3QC 1FIQB 1FFUC 1HSKA 1WYGA 3AMZA 3PM9A 3AN1A 3NVYB 2P4PA 2PLIA 2OAIA 4BCAA 5FXDA 2MBRA
chains in the Genus database with same CATH superfamily
2VAOA 2E3TA 3DQ0A 3ETRB 4MLAA 1E8FA 3AM9A 1DIIA 3D2DA 3RJAA 4OALA 3TSJA 3DEDA 1AHUA 1WVFA 1FO4A 3KJMA 4O95A 3LLBA 4PVKA 5AWVA 1F0XA 2BVFA 1FFVC 5FXEA 3EJEB 3HSUA 5AE3A 4XLOA 3EUB3 2R8DA 3D2HA 3NVWB 3S1DA 2EXRA 4PZFA 1W1RA 1W1SA 2R2ZA 2W55A 2Y3SA 4BBYA 2UUUA 1QLTA 2Q4WA 3FW7A 2GQTA 3RJ8A 3SR6B 1JROA 3NS1B 2O3GA 4PWBA 4PVEA 3EJDB 3NRZB 3W8XA 1WVEA 1DIQA 1W1KA 2I0KA 2VFUA 2P13A 2Q85A 1VDVA 3LAEA 1ZXIC 2GQUA 2RK5A 3PQBA 1E8HA 2QKNA 2AXRA 3TX1A 3JS8A 1N5XA 2Y4GA 5G5GB 5I1VA 3EJBB 1UXYA 5AE2A 1N61C 1N62C 4BC7A 3VTEA 3B9JB 2BVHA 3POPA 1AHVA 1DZNA 1VAOA 1W1LA 2Y08A 5AE1A 1ZR6A 1W1JA 1W1MA 4PVJA 3W8ZA 2PLSA 3D2JA 1E0YA 3TSHA 3FW9A 4JB1A 4EC3A 3C0PA 2WDWA 2QPMA 5FXPA 2VFSA 4HG0A 3GSYA 1W1QA 3S1EA 2VFTA 2BVGA 5I1WA 1V97A 3NVVB 2IPIA 3NVZB 1QLUA 2UUVA 4PWCA 2W3RA 1N5WC 2NQWA 3FWAA 2W3SA 1E8GA 5L6FA 4PVHA 2P3HA 1SB3B 5D79A 3S1FA 1RM6B 1JRPA 5HHZA 5K8EA 3FW8A 4PYTA 4ML8A 4JAYA 5G5HB 2YVSA 5HQXA 3BW7A 2W54A 4UD8A 1MBTA 5FXFA 1MBBA 3HRDC 3S1CA 5ADZA 1I19A 1AHZA 4ZOHB 2VFVA 1W1OA 4BC9A 4DNSA 3I99A 1N63C 5HMRA 3W8WA 2VFRA 1N60C 1T3QC 1FIQB 1FFUC 1HSKA 2Y3RA 1WYGA 3AMZA 5L6GA 3PM9A 3AN1A 3NVYB 2P4PA 2PLIA 2OAIA 4BCAA 5FXDA 2MBRA
chains in the Genus database with same CATH topology
2VAOA 2E3TA 3DQ0A 3ETRB 4MLAA 1E8FA 3AM9A 1DIIA 3D2DA 3RJAA 4OALA 3TSJA 3DEDA 1AHUA 1WVFA 1FO4A 3KJMA 4O95A 3LLBA 4PVKA 5AWVA 1F0XA 2BVFA 1FFVC 5FXEA 3HSUA 5AE3A 4XLOA 3EUB3 2R8DA 3D2HA 3NVWB 3S1DA 2EXRA 4PZFA 1W1RA 1W1SA 2R2ZA 2W55A 2Y3SA 4BBYA 2UUUA 1QLTA 2Q4WA 3FW7A 2GQTA 3RJ8A 3SR6B 1JROA 3NS1B 2O3GA 4PWBA 4PVEA 3NRZB 3W8XA 1WVEA 1DIQA 1W1KA 2I0KA 2VFUA 2P13A 2Q85A 1VDVA 3LAEA 1ZXIC 2GQUA 2RK5A 3PQBA 1E8HA 2QKNA 2AXRA 3TX1A 3JS8A 1N5XA 2Y4GA 5G5GB 5I1VA 1UXYA 5AE2A 1N61C 1N62C 4BC7A 3VTEA 3B9JB 2BVHA 3POPA 1AHVA 1DZNA 1VAOA 1W1LA 2Y08A 5AE1A 1ZR6A 1W1JA 1W1MA 4PVJA 3W8ZA 2PLSA 3D2JA 1E0YA 3TSHA 3FW9A 4JB1A 4EC3A 3C0PA 2WDWA 2QPMA 5FXPA 2VFSA 4HG0A 3GSYA 1W1QA 3S1EA 2VFTA 2BVGA 5I1WA 1V97A 3NVVB 2IPIA 3NVZB 1QLUA 2UUVA 4PWCA 2W3RA 1N5WC 2NQWA 3FWAA 2W3SA 1E8GA 5L6FA 4PVHA 2P3HA 1SB3B 5D79A 3S1FA 1RM6B 1JRPA 5HHZA 5K8EA 3FW8A 4PYTA 4ML8A 4JAYA 5G5HB 2YVSA 5HQXA 3BW7A 2W54A 4UD8A 1MBTA 5FXFA 1MBBA 3HRDC 3S1CA 5ADZA 1I19A 1AHZA 4ZOHB 2VFVA 1W1OA 4BC9A 4DNSA 3I99A 1N63C 5HMRA 3W8WA 2VFRA 1N60C 1T3QC 1FIQB 1FFUC 1HSKA 2Y3RA 1WYGA 3AMZA 5L6GA 3PM9A 3AN1A 3NVYB 2P4PA 2PLIA 2OAIA 4BCAA 5FXDA 2MBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VAO A;  2E3T A;  3DQ0 A;  3ETR B;  4MLA A;  1E8F A;  3AM9 A;  1DII A;  3D2D A;  4OAL A;  3TSJ A;  3DED A;  1AHU A;  1WVF A;  1FO4 A;  3KJM A;  4O95 A;  3LLB A;  4PVK A;  1F0X A;  2BVF A;  1FFV C;  5FXE A;  5AE3 A;  4XLO A;  3EUB 3;  2R8D A;  3D2H A;  3NVW B;  3S1D A;  2EXR A;  4PZF A;  1W1R A;  1W1S A;  2R2Z A;  2W55 A;  4BBY A;  1QLT A;  2Q4W A;  3FW7 A;  2GQT A;  3SR6 B;  1JRO A;  3NS1 B;  2O3G A;  4PWB A;  4PVE A;  3NRZ B;  3W8X A;  1WVE A;  1DIQ A;  1W1K A;  2I0K A;  2VFU A;  2P13 A;  2Q85 A;  1VDV A;  3LAE A;  1ZXI C;  2GQU A;  2RK5 A;  1E8H A;  2QKN A;  2AXR A;  3TX1 A;  3JS8 A;  1N5X A;  5G5G B;  1UXY A;  5AE2 A;  1N61 C;  1N62 C;  4BC7 A;  3VTE A;  3B9J B;  2BVH A;  1AHV A;  1DZN A;  1VAO A;  1W1L A;  5AE1 A;  1ZR6 A;  1W1J A;  1W1M A;  4PVJ A;  3W8Z A;  2PLS A;  3D2J A;  1E0Y A;  3TSH A;  3FW9 A;  4JB1 A;  4EC3 A;  3C0P A;  2QPM A;  5FXP A;  2VFS A;  4HG0 A;  3GSY A;  1W1Q A;  3S1E A;  2VFT A;  2BVG A;  1V97 A;  3NVV B;  3NVZ B;  1QLU A;  4PWC A;  2W3R A;  1N5W C;  2NQW A;  3FWA A;  2W3S A;  1E8G A;  4PVH A;  2P3H A;  1SB3 B;  5D79 A;  3S1F A;  1RM6 B;  1JRP A;  5HHZ A;  3FW8 A;  4PYT A;  4ML8 A;  4JAY A;  5G5H B;  2YVS A;  5HQX A;  3BW7 A;  2W54 A;  4UD8 A;  1MBT A;  5FXF A;  1MBB A;  3HRD C;  3S1C A;  5ADZ A;  1I19 A;  1AHZ A;  4ZOH B;  2VFV A;  1W1O A;  4BC9 A;  4DNS A;  3I99 A;  1N63 C;  5HMR A;  3W8W A;  2VFR A;  1N60 C;  1T3Q C;  1FIQ B;  1FFU C;  1HSK A;  1WYG A;  3AMZ A;  3PM9 A;  3AN1 A;  3NVY B;  2P4P A;  2PLI A;  2OAI A;  4BCA A;  5FXD A;  2MBR A; 
#chains in the Genus database with same CATH topology
 2VAO A;  2E3T A;  3DQ0 A;  3ETR B;  4MLA A;  1E8F A;  3AM9 A;  1DII A;  3D2D A;  3RJA A;  4OAL A;  3TSJ A;  3DED A;  1AHU A;  1WVF A;  1FO4 A;  3KJM A;  4O95 A;  3LLB A;  4PVK A;  5AWV A;  1F0X A;  2BVF A;  1FFV C;  5FXE A;  3EJE B;  3HSU A;  5AE3 A;  4XLO A;  3EUB 3;  2R8D A;  3D2H A;  3NVW B;  3S1D A;  2EXR A;  4PZF A;  1W1R A;  1W1S A;  2R2Z A;  2W55 A;  2Y3S A;  4BBY A;  2UUU A;  1QLT A;  2Q4W A;  3FW7 A;  2GQT A;  3RJ8 A;  3SR6 B;  1JRO A;  3NS1 B;  2O3G A;  4PWB A;  4PVE A;  3EJD B;  3NRZ B;  3W8X A;  1WVE A;  1DIQ A;  1W1K A;  2I0K A;  2VFU A;  2P13 A;  2Q85 A;  1VDV A;  3LAE A;  1ZXI C;  2GQU A;  2RK5 A;  3PQB A;  1E8H A;  2QKN A;  2AXR A;  3TX1 A;  3JS8 A;  1N5X A;  2Y4G A;  5G5G B;  5I1V A;  3EJB B;  1UXY A;  5AE2 A;  1N61 C;  1N62 C;  4BC7 A;  3VTE A;  3B9J B;  2BVH A;  3POP A;  1AHV A;  1DZN A;  1VAO A;  1W1L A;  2Y08 A;  5AE1 A;  1ZR6 A;  1W1J A;  1W1M A;  4PVJ A;  3W8Z A;  2PLS A;  3D2J A;  1E0Y A;  3TSH A;  3FW9 A;  4JB1 A;  4EC3 A;  3C0P A;  2WDW A;  2QPM A;  5FXP A;  2VFS A;  4HG0 A;  3GSY A;  1W1Q A;  3S1E A;  2VFT A;  2BVG A;  5I1W A;  1V97 A;  3NVV B;  2IPI A;  3NVZ B;  1QLU A;  2UUV A;  4PWC A;  2W3R A;  1N5W C;  2NQW A;  3FWA A;  2W3S A;  1E8G A;  5L6F A;  4PVH A;  2P3H A;  1SB3 B;  5D79 A;  3S1F A;  1RM6 B;  1JRP A;  5HHZ A;  5K8E A;  3FW8 A;  4PYT A;  4ML8 A;  4JAY A;  5G5H B;  2YVS A;  5HQX A;  3BW7 A;  2W54 A;  4UD8 A;  1MBT A;  5FXF A;  1MBB A;  3HRD C;  3S1C A;  5ADZ A;  1I19 A;  1AHZ A;  4ZOH B;  2VFV A;  1W1O A;  4BC9 A;  4DNS A;  3I99 A;  1N63 C;  5HMR A;  3W8W A;  2VFR A;  1N60 C;  1T3Q C;  1FIQ B;  1FFU C;  1HSK A;  2Y3R A;  1WYG A;  3AMZ A;  5L6G A;  3PM9 A;  3AN1 A;  3NVY B;  2P4P A;  2PLI A;  2OAI A;  4BCA A;  5FXD A;  2MBR A; 
#chains in the Genus database with same CATH homology
 2VAO A;  2E3T A;  3DQ0 A;  3ETR B;  4MLA A;  1E8F A;  3AM9 A;  1DII A;  3D2D A;  3RJA A;  4OAL A;  3TSJ A;  3DED A;  1AHU A;  1WVF A;  1FO4 A;  3KJM A;  4O95 A;  3LLB A;  4PVK A;  5AWV A;  1F0X A;  2BVF A;  1FFV C;  5FXE A;  3HSU A;  5AE3 A;  4XLO A;  3EUB 3;  2R8D A;  3D2H A;  3NVW B;  3S1D A;  2EXR A;  4PZF A;  1W1R A;  1W1S A;  2R2Z A;  2W55 A;  2Y3S A;  4BBY A;  2UUU A;  1QLT A;  2Q4W A;  3FW7 A;  2GQT A;  3RJ8 A;  3SR6 B;  1JRO A;  3NS1 B;  2O3G A;  4PWB A;  4PVE A;  3NRZ B;  3W8X A;  1WVE A;  1DIQ A;  1W1K A;  2I0K A;  2VFU A;  2P13 A;  2Q85 A;  1VDV A;  3LAE A;  1ZXI C;  2GQU A;  2RK5 A;  3PQB A;  1E8H A;  2QKN A;  2AXR A;  3TX1 A;  3JS8 A;  1N5X A;  2Y4G A;  5G5G B;  5I1V A;  1UXY A;  5AE2 A;  1N61 C;  1N62 C;  4BC7 A;  3VTE A;  3B9J B;  2BVH A;  3POP A;  1AHV A;  1DZN A;  1VAO A;  1W1L A;  2Y08 A;  5AE1 A;  1ZR6 A;  1W1J A;  1W1M A;  4PVJ A;  3W8Z A;  2PLS A;  3D2J A;  1E0Y A;  3TSH A;  3FW9 A;  4JB1 A;  4EC3 A;  3C0P A;  2WDW A;  2QPM A;  5FXP A;  2VFS A;  4HG0 A;  3GSY A;  1W1Q A;  3S1E A;  2VFT A;  2BVG A;  5I1W A;  1V97 A;  3NVV B;  2IPI A;  3NVZ B;  1QLU A;  2UUV A;  4PWC A;  2W3R A;  1N5W C;  2NQW A;  3FWA A;  2W3S A;  1E8G A;  5L6F A;  4PVH A;  2P3H A;  1SB3 B;  5D79 A;  3S1F A;  1RM6 B;  1JRP A;  5HHZ A;  5K8E A;  3FW8 A;  4PYT A;  4ML8 A;  4JAY A;  5G5H B;  2YVS A;  5HQX A;  3BW7 A;  2W54 A;  4UD8 A;  1MBT A;  5FXF A;  1MBB A;  3HRD C;  3S1C A;  5ADZ A;  1I19 A;  1AHZ A;  4ZOH B;  2VFV A;  1W1O A;  4BC9 A;  4DNS A;  3I99 A;  1N63 C;  5HMR A;  3W8W A;  2VFR A;  1N60 C;  1T3Q C;  1FIQ B;  1FFU C;  1HSK A;  2Y3R A;  1WYG A;  3AMZ A;  5L6G A;  3PM9 A;  3AN1 A;  3NVY B;  2P4P A;  2PLI A;  2OAI A;  4BCA A;  5FXD A;  2MBR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...