1VAOA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
molecule tags Flavoenzyme
total genus 170
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1vaoA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1vaoA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1vaoA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1vaoA03
3PM9A 2GQTA 1WVFA 2PLIA 5HHZA 1N63C 3ETRB 2W54A 3NS1B 1W1QA 1W1OA 2YVSA 3S1DA 2VFRA 1MBTA 1F0XA 3S1EA 1ZXIC 4BC7A 3NVWB 3TX1A 3NRZB 3DEDA 3FW8A 3GSYA 4PVJA 5FXPA 1W1SA 5G5GB 4ML8A 1N62C 2O3GA 5FXFA 3D2HA 3I99A 4PYTA 5FXDA 1E8HA 3NVYB 1W1KA 2PLSA 1N61C 1E8FA 3FWAA 2VFSA 2VFTA 3BW7A 4BCAA 1FFVC 2BVFA 2Q4WA 3EUB3 1UXYA 1FO4A 2R2ZA 2I0KA 3LAEA 1JRPA 1MBBA 5G5HB 1JROA 3FW7A 4DNSA 3AMZA 4HG0A 5HMRA 2QPMA 1FFUC 4OALA 1DIQA 3W8WA 1AHVA 4PVEA 5HQXA 3NVVB 1VDVA 3TSHA 2MBRA 4O95A 3KJMA 2QKNA 3TSJA 3JS8A 2VFUA 3AN1A 1ZR6A 1RM6B 1W1LA 1QLUA 4PVHA 2R8DA 1WYGA 4PWCA 4ZOHB 1HSKA 5ADZA 4PWBA 3S1FA 5AE1A 2W3SA 1W1RA 2W55A 4XLOA 1E0YA 3C0PA 2P13A 1WVEA 1AHZA 3LLBA 1W1JA 5FXEA 2BVGA 4MLAA 3D2JA 1W1MA 3HRDC 3SR6B 1E8GA 4JAYA 1I19A 3DQ0A 2VFVA 3FW9A 1DIIA 1N5XA 1T3QC 1SB3B 1QLTA 2W3RA 4PZFA 2GQUA 3AM9A 2BVHA 2E3TA 4EC3A 2AXRA 2OAIA 5D79A 1N5WC 2Q85A 4PVKA 3W8ZA 3S1CA 5AE3A 1DZNA 5AE2A 1V97A 4UD8A 4BBYA 4JB1A 2P4PA 1VAOA 1FIQB 1AHUA 2VAOA 2NQWA 2RK5A 2P3HA 1N60C 4BC9A 3VTEA 2EXRA 3B9JB 3NVZB 3W8XA 3D2DA
chains in the Genus database with same CATH superfamily
3PM9A 2GQTA 1WVFA 3PQBA 2PLIA 5HHZA 5K8EA 1N63C 3ETRB 2W54A 3NS1B 3HSUA 1W1QA 1W1OA 2YVSA 3S1DA 2VFRA 1MBTA 1F0XA 3EJEB 3NVWB 1ZXIC 4BC7A 3S1EA 5I1WA 5L6GA 3TX1A 3NRZB 3DEDA 3FW8A 3GSYA 4PVJA 5FXPA 1W1SA 5G5GB 4ML8A 2Y3SA 1N62C 2O3GA 2Y08A 3RJ8A 5FXFA 3D2HA 3I99A 4PYTA 5FXDA 1E8HA 3NVYB 1W1KA 2PLSA 1N61C 1E8FA 3FWAA 2VFSA 2VFTA 3BW7A 4BCAA 1FFVC 2Y3RA 2BVFA 2Q4WA 3EUB3 1UXYA 1FO4A 2R2ZA 2I0KA 3LAEA 2UUUA 1JRPA 1MBBA 5G5HB 1JROA 3FW7A 4DNSA 3AMZA 4HG0A 5HMRA 2QPMA 1FFUC 4OALA 1DIQA 3W8WA 1AHVA 4PVEA 5L6FA 5HQXA 2UUVA 3NVVB 1VDVA 3TSHA 2MBRA 4O95A 3KJMA 2QKNA 3TSJA 3JS8A 2VFUA 3AN1A 2WDWA 1ZR6A 1RM6B 1W1LA 1QLUA 4PVHA 2R8DA 1WYGA 4PWCA 4ZOHB 1HSKA 5ADZA 4PWBA 3S1FA 5AE1A 2W3SA 1W1RA 2W55A 3EJDB 1E0YA 4XLOA 3C0PA 2P13A 1WVEA 1AHZA 3LLBA 1W1JA 5FXEA 2BVGA 4MLAA 3D2JA 1W1MA 3HRDC 3SR6B 1E8GA 2IPIA 2Y4GA 4JAYA 1I19A 3DQ0A 3RJAA 2VFVA 3FW9A 1DIIA 1N5XA 1T3QC 1SB3B 1QLTA 2W3RA 4PZFA 2GQUA 3AM9A 5I1VA 3POPA 2BVHA 2E3TA 4EC3A 2AXRA 2OAIA 5D79A 1N5WC 2Q85A 4PVKA 3W8ZA 3S1CA 5AE3A 1DZNA 5AE2A 1V97A 4UD8A 4BBYA 4JB1A 2P4PA 1VAOA 1FIQB 3EJBB 1AHUA 2VAOA 2NQWA 2RK5A 2P3HA 1N60C 4BC9A 3VTEA 2EXRA 3B9JB 3NVZB 3W8XA 5AWVA 3D2DA
chains in the Genus database with same CATH topology
3PM9A 2GQTA 1WVFA 3PQBA 2PLIA 5HHZA 5K8EA 1N63C 3ETRB 2W54A 3NS1B 3HSUA 1W1QA 1W1OA 2YVSA 3S1DA 2VFRA 1MBTA 1F0XA 3S1EA 1ZXIC 4BC7A 3NVWB 5I1WA 5L6GA 3TX1A 3NRZB 3DEDA 3FW8A 3GSYA 4PVJA 5FXPA 1W1SA 5G5GB 4ML8A 2Y3SA 1N62C 2O3GA 2Y08A 3RJ8A 5FXFA 3D2HA 3I99A 4PYTA 5FXDA 1E8HA 3NVYB 1W1KA 2PLSA 1N61C 1E8FA 3FWAA 2VFSA 2VFTA 3BW7A 4BCAA 1FFVC 2Y3RA 2BVFA 2Q4WA 3EUB3 1UXYA 1FO4A 2R2ZA 2I0KA 3LAEA 2UUUA 1JRPA 1MBBA 5G5HB 1JROA 3FW7A 4DNSA 3AMZA 4HG0A 5HMRA 2QPMA 1FFUC 4OALA 1DIQA 3W8WA 1AHVA 4PVEA 5L6FA 5HQXA 2UUVA 3NVVB 1VDVA 3TSHA 2MBRA 4O95A 3KJMA 2QKNA 3TSJA 3JS8A 2VFUA 3AN1A 2WDWA 1ZR6A 1RM6B 1W1LA 1QLUA 4PVHA 2R8DA 1WYGA 4PWCA 4ZOHB 1HSKA 5ADZA 4PWBA 3S1FA 5AE1A 2W3SA 1W1RA 2W55A 4XLOA 1E0YA 3C0PA 2P13A 1WVEA 1AHZA 3LLBA 1W1JA 5FXEA 2BVGA 4MLAA 3D2JA 1W1MA 3HRDC 3SR6B 1E8GA 2IPIA 2Y4GA 4JAYA 1I19A 3DQ0A 3RJAA 2VFVA 3FW9A 1DIIA 1N5XA 1T3QC 1SB3B 1QLTA 2W3RA 4PZFA 2GQUA 3AM9A 5I1VA 3POPA 2BVHA 2E3TA 4EC3A 2AXRA 2OAIA 5D79A 1N5WC 2Q85A 4PVKA 3W8ZA 3S1CA 5AE3A 1DZNA 5AE2A 1V97A 4UD8A 4BBYA 4JB1A 2P4PA 1VAOA 1FIQB 1AHUA 2VAOA 2NQWA 2RK5A 2P3HA 1N60C 4BC9A 3VTEA 2EXRA 3B9JB 3NVZB 3W8XA 5AWVA 3D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PM9 A;  2GQT A;  1WVF A;  2PLI A;  5HHZ A;  1N63 C;  3ETR B;  2W54 A;  3NS1 B;  1W1Q A;  1W1O A;  2YVS A;  3S1D A;  2VFR A;  1MBT A;  1F0X A;  3S1E A;  1ZXI C;  4BC7 A;  3NVW B;  3TX1 A;  3NRZ B;  3DED A;  3FW8 A;  3GSY A;  4PVJ A;  5FXP A;  1W1S A;  5G5G B;  4ML8 A;  1N62 C;  2O3G A;  5FXF A;  3D2H A;  3I99 A;  4PYT A;  5FXD A;  1E8H A;  3NVY B;  1W1K A;  2PLS A;  1N61 C;  1E8F A;  3FWA A;  2VFS A;  2VFT A;  3BW7 A;  4BCA A;  1FFV C;  2BVF A;  2Q4W A;  3EUB 3;  1UXY A;  1FO4 A;  2R2Z A;  2I0K A;  3LAE A;  1JRP A;  1MBB A;  5G5H B;  1JRO A;  3FW7 A;  4DNS A;  3AMZ A;  4HG0 A;  5HMR A;  2QPM A;  1FFU C;  4OAL A;  1DIQ A;  3W8W A;  1AHV A;  4PVE A;  5HQX A;  3NVV B;  1VDV A;  3TSH A;  2MBR A;  4O95 A;  3KJM A;  2QKN A;  3TSJ A;  3JS8 A;  2VFU A;  3AN1 A;  1ZR6 A;  1RM6 B;  1W1L A;  1QLU A;  4PVH A;  2R8D A;  1WYG A;  4PWC A;  4ZOH B;  1HSK A;  5ADZ A;  4PWB A;  3S1F A;  5AE1 A;  2W3S A;  1W1R A;  2W55 A;  4XLO A;  1E0Y A;  3C0P A;  2P13 A;  1WVE A;  1AHZ A;  3LLB A;  1W1J A;  5FXE A;  2BVG A;  4MLA A;  3D2J A;  1W1M A;  3HRD C;  3SR6 B;  1E8G A;  4JAY A;  1I19 A;  3DQ0 A;  2VFV A;  3FW9 A;  1DII A;  1N5X A;  1T3Q C;  1SB3 B;  1QLT A;  2W3R A;  4PZF A;  2GQU A;  3AM9 A;  2BVH A;  2E3T A;  4EC3 A;  2AXR A;  2OAI A;  5D79 A;  1N5W C;  2Q85 A;  4PVK A;  3W8Z A;  3S1C A;  5AE3 A;  1DZN A;  5AE2 A;  1V97 A;  4UD8 A;  4BBY A;  4JB1 A;  2P4P A;  1VAO A;  1FIQ B;  1AHU A;  2VAO A;  2NQW A;  2RK5 A;  2P3H A;  1N60 C;  4BC9 A;  3VTE A;  2EXR A;  3B9J B;  3NVZ B;  3W8X A;  3D2D A; 
#chains in the Genus database with same CATH topology
 3PM9 A;  2GQT A;  1WVF A;  3PQB A;  2PLI A;  5HHZ A;  5K8E A;  1N63 C;  3ETR B;  2W54 A;  3NS1 B;  3HSU A;  1W1Q A;  1W1O A;  2YVS A;  3S1D A;  2VFR A;  1MBT A;  1F0X A;  3EJE B;  3NVW B;  1ZXI C;  4BC7 A;  3S1E A;  5I1W A;  5L6G A;  3TX1 A;  3NRZ B;  3DED A;  3FW8 A;  3GSY A;  4PVJ A;  5FXP A;  1W1S A;  5G5G B;  4ML8 A;  2Y3S A;  1N62 C;  2O3G A;  2Y08 A;  3RJ8 A;  5FXF A;  3D2H A;  3I99 A;  4PYT A;  5FXD A;  1E8H A;  3NVY B;  1W1K A;  2PLS A;  1N61 C;  1E8F A;  3FWA A;  2VFS A;  2VFT A;  3BW7 A;  4BCA A;  1FFV C;  2Y3R A;  2BVF A;  2Q4W A;  3EUB 3;  1UXY A;  1FO4 A;  2R2Z A;  2I0K A;  3LAE A;  2UUU A;  1JRP A;  1MBB A;  5G5H B;  1JRO A;  3FW7 A;  4DNS A;  3AMZ A;  4HG0 A;  5HMR A;  2QPM A;  1FFU C;  4OAL A;  1DIQ A;  3W8W A;  1AHV A;  4PVE A;  5L6F A;  5HQX A;  2UUV A;  3NVV B;  1VDV A;  3TSH A;  2MBR A;  4O95 A;  3KJM A;  2QKN A;  3TSJ A;  3JS8 A;  2VFU A;  3AN1 A;  2WDW A;  1ZR6 A;  1RM6 B;  1W1L A;  1QLU A;  4PVH A;  2R8D A;  1WYG A;  4PWC A;  4ZOH B;  1HSK A;  5ADZ A;  4PWB A;  3S1F A;  5AE1 A;  2W3S A;  1W1R A;  2W55 A;  3EJD B;  1E0Y A;  4XLO A;  3C0P A;  2P13 A;  1WVE A;  1AHZ A;  3LLB A;  1W1J A;  5FXE A;  2BVG A;  4MLA A;  3D2J A;  1W1M A;  3HRD C;  3SR6 B;  1E8G A;  2IPI A;  2Y4G A;  4JAY A;  1I19 A;  3DQ0 A;  3RJA A;  2VFV A;  3FW9 A;  1DII A;  1N5X A;  1T3Q C;  1SB3 B;  1QLT A;  2W3R A;  4PZF A;  2GQU A;  3AM9 A;  5I1V A;  3POP A;  2BVH A;  2E3T A;  4EC3 A;  2AXR A;  2OAI A;  5D79 A;  1N5W C;  2Q85 A;  4PVK A;  3W8Z A;  3S1C A;  5AE3 A;  1DZN A;  5AE2 A;  1V97 A;  4UD8 A;  4BBY A;  4JB1 A;  2P4P A;  1VAO A;  1FIQ B;  3EJB B;  1AHU A;  2VAO A;  2NQW A;  2RK5 A;  2P3H A;  1N60 C;  4BC9 A;  3VTE A;  2EXR A;  3B9J B;  3NVZ B;  3W8X A;  5AWV A;  3D2D A; 
#chains in the Genus database with same CATH homology
 3PM9 A;  2GQT A;  1WVF A;  3PQB A;  2PLI A;  5HHZ A;  5K8E A;  1N63 C;  3ETR B;  2W54 A;  3NS1 B;  3HSU A;  1W1Q A;  1W1O A;  2YVS A;  3S1D A;  2VFR A;  1MBT A;  1F0X A;  3S1E A;  1ZXI C;  4BC7 A;  3NVW B;  5I1W A;  5L6G A;  3TX1 A;  3NRZ B;  3DED A;  3FW8 A;  3GSY A;  4PVJ A;  5FXP A;  1W1S A;  5G5G B;  4ML8 A;  2Y3S A;  1N62 C;  2O3G A;  2Y08 A;  3RJ8 A;  5FXF A;  3D2H A;  3I99 A;  4PYT A;  5FXD A;  1E8H A;  3NVY B;  1W1K A;  2PLS A;  1N61 C;  1E8F A;  3FWA A;  2VFS A;  2VFT A;  3BW7 A;  4BCA A;  1FFV C;  2Y3R A;  2BVF A;  2Q4W A;  3EUB 3;  1UXY A;  1FO4 A;  2R2Z A;  2I0K A;  3LAE A;  2UUU A;  1JRP A;  1MBB A;  5G5H B;  1JRO A;  3FW7 A;  4DNS A;  3AMZ A;  4HG0 A;  5HMR A;  2QPM A;  1FFU C;  4OAL A;  1DIQ A;  3W8W A;  1AHV A;  4PVE A;  5L6F A;  5HQX A;  2UUV A;  3NVV B;  1VDV A;  3TSH A;  2MBR A;  4O95 A;  3KJM A;  2QKN A;  3TSJ A;  3JS8 A;  2VFU A;  3AN1 A;  2WDW A;  1ZR6 A;  1RM6 B;  1W1L A;  1QLU A;  4PVH A;  2R8D A;  1WYG A;  4PWC A;  4ZOH B;  1HSK A;  5ADZ A;  4PWB A;  3S1F A;  5AE1 A;  2W3S A;  1W1R A;  2W55 A;  4XLO A;  1E0Y A;  3C0P A;  2P13 A;  1WVE A;  1AHZ A;  3LLB A;  1W1J A;  5FXE A;  2BVG A;  4MLA A;  3D2J A;  1W1M A;  3HRD C;  3SR6 B;  1E8G A;  2IPI A;  2Y4G A;  4JAY A;  1I19 A;  3DQ0 A;  3RJA A;  2VFV A;  3FW9 A;  1DII A;  1N5X A;  1T3Q C;  1SB3 B;  1QLT A;  2W3R A;  4PZF A;  2GQU A;  3AM9 A;  5I1V A;  3POP A;  2BVH A;  2E3T A;  4EC3 A;  2AXR A;  2OAI A;  5D79 A;  1N5W C;  2Q85 A;  4PVK A;  3W8Z A;  3S1C A;  5AE3 A;  1DZN A;  5AE2 A;  1V97 A;  4UD8 A;  4BBY A;  4JB1 A;  2P4P A;  1VAO A;  1FIQ B;  1AHU A;  2VAO A;  2NQW A;  2RK5 A;  2P3H A;  1N60 C;  4BC9 A;  3VTE A;  2EXR A;  3B9J B;  3NVZ B;  3W8X A;  5AWV A;  3D2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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