1VAOA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
total genus 170
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1vaoA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1vaoA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1vaoA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1vaoA03
3W8ZA 3EUB3 4JB1A 1W1KA 1W1SA 4MLAA 1DIQA 3HRDC 4PZFA 3LLBA 1JRPA 2YVSA 5ADZA 2BVFA 3AM9A 2P4PA 1MBBA 3D2HA 3NVWB 2VFTA 3TSJA 4BBYA 3W8XA 1N60C 2R8DA 1FIQB 1ZXIC 2W54A 3NRZB 3S1DA 1JROA 4PYTA 2NQWA 2P3HA 1E0YA 4EC3A 3DEDA 3D2DA 4JAYA 4HG0A 2O3GA 4PWCA 3I99A 5FXEA 1I19A 5HHZA 5AE2A 2VAOA 3C0PA 4PVHA 2BVGA 3DQ0A 5G5GB 1AHVA 2AXRA 1RM6B 3VTEA 4ML8A 4BC9A 5FXFA 1W1MA 1FO4A 2W55A 1AHUA 1E8FA 3KJMA 1N5WC 2BVHA 3SR6B 5FXDA 2W3SA 1W1JA 1FFUC 1DZNA 4PVKA 1AHZA 3BW7A 1WYGA 4BCAA 4PWBA 1HSKA 1W1LA 2GQTA 5FXPA 1VAOA 1N5XA 2W3RA 2QPMA 1UXYA 3S1EA 2VFRA 3TSHA 2PLIA 4DNSA 3JS8A 2OAIA 2VFUA 2MBRA 1FFVC 3FWAA 1W1OA 3AMZA 3NVVB 5G5HB 4O95A 1ZR6A 3AN1A 1SB3B 3NVZB 1QLUA 3NVYB 4PVEA 1E8HA 1V97A 2P13A 4PVJA 1WVFA 3LAEA 3B9JB 4XLOA 5AE1A 3ETRB 2Q85A 1N63C 4BC7A 5HMRA 1E8GA 2QKNA 3FW8A 1VDVA 3GSYA 1WVEA 1QLTA 1N62C 3PM9A 4OALA 2I0KA 2VFVA 2Q4WA 3TX1A 1MBTA 3NS1B 2GQUA 1N61C 3FW9A 1F0XA 3D2JA 1DIIA 5AE3A 2R2ZA 4UD8A 3S1FA 2E3TA 1W1RA 2EXRA 3FW7A 5HQXA 2RK5A 2VFSA 1W1QA 3W8WA 1T3QC 3S1CA 2PLSA 4ZOHB 5D79A
chains in the Genus database with same CATH superfamily
3W8ZA 3EUB3 4JB1A 1W1KA 5I1VA 1W1SA 4MLAA 2Y3RA 1DIQA 3HRDC 4PZFA 3LLBA 2IPIA 1JRPA 2Y3SA 5ADZA 2YVSA 2BVFA 3AM9A 2P4PA 1MBBA 3D2HA 3NVWB 2VFTA 3TSJA 4BBYA 3W8XA 1N60C 2R8DA 1FIQB 1ZXIC 2W54A 3NRZB 3S1DA 1JROA 4PYTA 2NQWA 2P3HA 1E0YA 4EC3A 3EJBB 3D2DA 3DEDA 4JAYA 4HG0A 2O3GA 4PWCA 5K8EA 3I99A 5L6FA 5L6GA 5FXEA 1I19A 5HHZA 5AE2A 2VAOA 3C0PA 4PVHA 2BVGA 3DQ0A 5G5GB 1AHVA 2AXRA 1RM6B 3VTEA 4ML8A 4BC9A 5FXFA 1W1MA 1FO4A 2Y4GA 2W55A 1AHUA 1E8FA 3KJMA 1N5WC 2BVHA 3SR6B 5FXDA 2W3SA 1W1JA 1FFUC 1DZNA 4PVKA 3POPA 1AHZA 3BW7A 1WYGA 4BCAA 4PWBA 2UUVA 1HSKA 1W1LA 2GQTA 5AWVA 5FXPA 1VAOA 1N5XA 2W3RA 2QPMA 3HSUA 1UXYA 3S1EA 2VFRA 3TSHA 2PLIA 4DNSA 3JS8A 2OAIA 2VFUA 2MBRA 1FFVC 3FWAA 1W1OA 3AMZA 3NVVB 5G5HB 4O95A 1ZR6A 3AN1A 1SB3B 2UUUA 3NVZB 1QLUA 3NVYB 4PVEA 1E8HA 1V97A 2WDWA 2P13A 4PVJA 1WVFA 3LAEA 3B9JB 4XLOA 5AE1A 3ETRB 2Y08A 3RJAA 2Q85A 1N63C 4BC7A 5HMRA 1E8GA 2QKNA 3FW8A 3EJDB 1VDVA 3GSYA 1WVEA 1QLTA 1N62C 3PM9A 4OALA 5I1WA 2I0KA 2VFVA 2Q4WA 3TX1A 1MBTA 3NS1B 3EJEB 2GQUA 1N61C 3FW9A 1F0XA 3D2JA 1DIIA 5AE3A 2R2ZA 4UD8A 3S1FA 2E3TA 1W1RA 2EXRA 3FW7A 5HQXA 2RK5A 2VFSA 1W1QA 3W8WA 1T3QC 3S1CA 2PLSA 4ZOHB 5D79A 3RJ8A 3PQBA
chains in the Genus database with same CATH topology
3W8ZA 3EUB3 4JB1A 1W1KA 5I1VA 1W1SA 4MLAA 2Y3RA 1DIQA 3HRDC 4PZFA 3LLBA 2IPIA 1JRPA 2Y3SA 5ADZA 2YVSA 2BVFA 3AM9A 2P4PA 1MBBA 3D2HA 3NVWB 2VFTA 3TSJA 4BBYA 3W8XA 1N60C 2R8DA 1FIQB 1ZXIC 2W54A 3NRZB 3S1DA 1JROA 4PYTA 2NQWA 2P3HA 1E0YA 4EC3A 3DEDA 3D2DA 4JAYA 4HG0A 2O3GA 4PWCA 5K8EA 3I99A 5L6FA 5L6GA 5FXEA 1I19A 5HHZA 5AE2A 2VAOA 3C0PA 4PVHA 2BVGA 3DQ0A 5G5GB 1AHVA 2AXRA 1RM6B 3VTEA 4ML8A 4BC9A 5FXFA 1W1MA 1FO4A 2Y4GA 2W55A 1AHUA 1E8FA 3KJMA 1N5WC 2BVHA 3SR6B 5FXDA 2W3SA 1W1JA 1FFUC 1DZNA 4PVKA 3POPA 1AHZA 3BW7A 1WYGA 4BCAA 4PWBA 2UUVA 1HSKA 1W1LA 2GQTA 5AWVA 5FXPA 1VAOA 1N5XA 2W3RA 2QPMA 3HSUA 1UXYA 3S1EA 2VFRA 3TSHA 2PLIA 4DNSA 3JS8A 2OAIA 2VFUA 2MBRA 1FFVC 3FWAA 1W1OA 3AMZA 3NVVB 5G5HB 4O95A 1ZR6A 3AN1A 1SB3B 2UUUA 3NVZB 1QLUA 3NVYB 4PVEA 1E8HA 1V97A 2WDWA 2P13A 4PVJA 1WVFA 3LAEA 3B9JB 4XLOA 5AE1A 3ETRB 2Y08A 3RJAA 2Q85A 1N63C 4BC7A 5HMRA 1E8GA 2QKNA 3FW8A 1VDVA 3GSYA 1WVEA 1QLTA 1N62C 3PM9A 4OALA 5I1WA 2I0KA 2VFVA 2Q4WA 3TX1A 1MBTA 3NS1B 2GQUA 1N61C 3FW9A 1F0XA 3D2JA 1DIIA 5AE3A 2R2ZA 4UD8A 3S1FA 2E3TA 1W1RA 2EXRA 3FW7A 5HQXA 2RK5A 2VFSA 1W1QA 3W8WA 1T3QC 3S1CA 2PLSA 4ZOHB 5D79A 3RJ8A 3PQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W8Z A;  3EUB 3;  4JB1 A;  1W1K A;  1W1S A;  4MLA A;  1DIQ A;  3HRD C;  4PZF A;  3LLB A;  1JRP A;  2YVS A;  5ADZ A;  2BVF A;  3AM9 A;  2P4P A;  1MBB A;  3D2H A;  3NVW B;  2VFT A;  3TSJ A;  4BBY A;  3W8X A;  1N60 C;  2R8D A;  1FIQ B;  1ZXI C;  2W54 A;  3NRZ B;  3S1D A;  1JRO A;  4PYT A;  2NQW A;  2P3H A;  1E0Y A;  4EC3 A;  3DED A;  3D2D A;  4JAY A;  4HG0 A;  2O3G A;  4PWC A;  3I99 A;  5FXE A;  1I19 A;  5HHZ A;  5AE2 A;  2VAO A;  3C0P A;  4PVH A;  2BVG A;  3DQ0 A;  5G5G B;  1AHV A;  2AXR A;  1RM6 B;  3VTE A;  4ML8 A;  4BC9 A;  5FXF A;  1W1M A;  1FO4 A;  2W55 A;  1AHU A;  1E8F A;  3KJM A;  1N5W C;  2BVH A;  3SR6 B;  5FXD A;  2W3S A;  1W1J A;  1FFU C;  1DZN A;  4PVK A;  1AHZ A;  3BW7 A;  1WYG A;  4BCA A;  4PWB A;  1HSK A;  1W1L A;  2GQT A;  5FXP A;  1VAO A;  1N5X A;  2W3R A;  2QPM A;  1UXY A;  3S1E A;  2VFR A;  3TSH A;  2PLI A;  4DNS A;  3JS8 A;  2OAI A;  2VFU A;  2MBR A;  1FFV C;  3FWA A;  1W1O A;  3AMZ A;  3NVV B;  5G5H B;  4O95 A;  1ZR6 A;  3AN1 A;  1SB3 B;  3NVZ B;  1QLU A;  3NVY B;  4PVE A;  1E8H A;  1V97 A;  2P13 A;  4PVJ A;  1WVF A;  3LAE A;  3B9J B;  4XLO A;  5AE1 A;  3ETR B;  2Q85 A;  1N63 C;  4BC7 A;  5HMR A;  1E8G A;  2QKN A;  3FW8 A;  1VDV A;  3GSY A;  1WVE A;  1QLT A;  1N62 C;  3PM9 A;  4OAL A;  2I0K A;  2VFV A;  2Q4W A;  3TX1 A;  1MBT A;  3NS1 B;  2GQU A;  1N61 C;  3FW9 A;  1F0X A;  3D2J A;  1DII A;  5AE3 A;  2R2Z A;  4UD8 A;  3S1F A;  2E3T A;  1W1R A;  2EXR A;  3FW7 A;  5HQX A;  2RK5 A;  2VFS A;  1W1Q A;  3W8W A;  1T3Q C;  3S1C A;  2PLS A;  4ZOH B;  5D79 A; 
#chains in the Genus database with same CATH topology
 3W8Z A;  3EUB 3;  4JB1 A;  1W1K A;  5I1V A;  1W1S A;  4MLA A;  2Y3R A;  1DIQ A;  3HRD C;  4PZF A;  3LLB A;  2IPI A;  1JRP A;  2Y3S A;  5ADZ A;  2YVS A;  2BVF A;  3AM9 A;  2P4P A;  1MBB A;  3D2H A;  3NVW B;  2VFT A;  3TSJ A;  4BBY A;  3W8X A;  1N60 C;  2R8D A;  1FIQ B;  1ZXI C;  2W54 A;  3NRZ B;  3S1D A;  1JRO A;  4PYT A;  2NQW A;  2P3H A;  1E0Y A;  4EC3 A;  3EJB B;  3D2D A;  3DED A;  4JAY A;  4HG0 A;  2O3G A;  4PWC A;  5K8E A;  3I99 A;  5L6F A;  5L6G A;  5FXE A;  1I19 A;  5HHZ A;  5AE2 A;  2VAO A;  3C0P A;  4PVH A;  2BVG A;  3DQ0 A;  5G5G B;  1AHV A;  2AXR A;  1RM6 B;  3VTE A;  4ML8 A;  4BC9 A;  5FXF A;  1W1M A;  1FO4 A;  2Y4G A;  2W55 A;  1AHU A;  1E8F A;  3KJM A;  1N5W C;  2BVH A;  3SR6 B;  5FXD A;  2W3S A;  1W1J A;  1FFU C;  1DZN A;  4PVK A;  3POP A;  1AHZ A;  3BW7 A;  1WYG A;  4BCA A;  4PWB A;  2UUV A;  1HSK A;  1W1L A;  2GQT A;  5AWV A;  5FXP A;  1VAO A;  1N5X A;  2W3R A;  2QPM A;  3HSU A;  1UXY A;  3S1E A;  2VFR A;  3TSH A;  2PLI A;  4DNS A;  3JS8 A;  2OAI A;  2VFU A;  2MBR A;  1FFV C;  3FWA A;  1W1O A;  3AMZ A;  3NVV B;  5G5H B;  4O95 A;  1ZR6 A;  3AN1 A;  1SB3 B;  2UUU A;  3NVZ B;  1QLU A;  3NVY B;  4PVE A;  1E8H A;  1V97 A;  2WDW A;  2P13 A;  4PVJ A;  1WVF A;  3LAE A;  3B9J B;  4XLO A;  5AE1 A;  3ETR B;  2Y08 A;  3RJA A;  2Q85 A;  1N63 C;  4BC7 A;  5HMR A;  1E8G A;  2QKN A;  3FW8 A;  3EJD B;  1VDV A;  3GSY A;  1WVE A;  1QLT A;  1N62 C;  3PM9 A;  4OAL A;  5I1W A;  2I0K A;  2VFV A;  2Q4W A;  3TX1 A;  1MBT A;  3NS1 B;  3EJE B;  2GQU A;  1N61 C;  3FW9 A;  1F0X A;  3D2J A;  1DII A;  5AE3 A;  2R2Z A;  4UD8 A;  3S1F A;  2E3T A;  1W1R A;  2EXR A;  3FW7 A;  5HQX A;  2RK5 A;  2VFS A;  1W1Q A;  3W8W A;  1T3Q C;  3S1C A;  2PLS A;  4ZOH B;  5D79 A;  3RJ8 A;  3PQB A; 
#chains in the Genus database with same CATH homology
 3W8Z A;  3EUB 3;  4JB1 A;  1W1K A;  5I1V A;  1W1S A;  4MLA A;  2Y3R A;  1DIQ A;  3HRD C;  4PZF A;  3LLB A;  2IPI A;  1JRP A;  2Y3S A;  5ADZ A;  2YVS A;  2BVF A;  3AM9 A;  2P4P A;  1MBB A;  3D2H A;  3NVW B;  2VFT A;  3TSJ A;  4BBY A;  3W8X A;  1N60 C;  2R8D A;  1FIQ B;  1ZXI C;  2W54 A;  3NRZ B;  3S1D A;  1JRO A;  4PYT A;  2NQW A;  2P3H A;  1E0Y A;  4EC3 A;  3DED A;  3D2D A;  4JAY A;  4HG0 A;  2O3G A;  4PWC A;  5K8E A;  3I99 A;  5L6F A;  5L6G A;  5FXE A;  1I19 A;  5HHZ A;  5AE2 A;  2VAO A;  3C0P A;  4PVH A;  2BVG A;  3DQ0 A;  5G5G B;  1AHV A;  2AXR A;  1RM6 B;  3VTE A;  4ML8 A;  4BC9 A;  5FXF A;  1W1M A;  1FO4 A;  2Y4G A;  2W55 A;  1AHU A;  1E8F A;  3KJM A;  1N5W C;  2BVH A;  3SR6 B;  5FXD A;  2W3S A;  1W1J A;  1FFU C;  1DZN A;  4PVK A;  3POP A;  1AHZ A;  3BW7 A;  1WYG A;  4BCA A;  4PWB A;  2UUV A;  1HSK A;  1W1L A;  2GQT A;  5AWV A;  5FXP A;  1VAO A;  1N5X A;  2W3R A;  2QPM A;  3HSU A;  1UXY A;  3S1E A;  2VFR A;  3TSH A;  2PLI A;  4DNS A;  3JS8 A;  2OAI A;  2VFU A;  2MBR A;  1FFV C;  3FWA A;  1W1O A;  3AMZ A;  3NVV B;  5G5H B;  4O95 A;  1ZR6 A;  3AN1 A;  1SB3 B;  2UUU A;  3NVZ B;  1QLU A;  3NVY B;  4PVE A;  1E8H A;  1V97 A;  2WDW A;  2P13 A;  4PVJ A;  1WVF A;  3LAE A;  3B9J B;  4XLO A;  5AE1 A;  3ETR B;  2Y08 A;  3RJA A;  2Q85 A;  1N63 C;  4BC7 A;  5HMR A;  1E8G A;  2QKN A;  3FW8 A;  1VDV A;  3GSY A;  1WVE A;  1QLT A;  1N62 C;  3PM9 A;  4OAL A;  5I1W A;  2I0K A;  2VFV A;  2Q4W A;  3TX1 A;  1MBT A;  3NS1 B;  2GQU A;  1N61 C;  3FW9 A;  1F0X A;  3D2J A;  1DII A;  5AE3 A;  2R2Z A;  4UD8 A;  3S1F A;  2E3T A;  1W1R A;  2EXR A;  3FW7 A;  5HQX A;  2RK5 A;  2VFS A;  1W1Q A;  3W8W A;  1T3Q C;  3S1C A;  2PLS A;  4ZOH B;  5D79 A;  3RJ8 A;  3PQB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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