1VBC4

Poliovirus (type 3, sabin strain) (p3/sabin, p3/leon/12a(1)b) complexed with r77975
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
62
Chain Sequence
GAQVSSQKVGAHENSSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords POLIOVIRUS TYPE 3
publication title Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design.
pubmed doi rcsb
total genus 3
structure length 62
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1996-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1vbc400
1VBC4 2X5ID 1AL24 1PVC4 1MQTD 1RHI4 1PO14 1RUG4 1VBA4 1VRH4 2RM24 2RR14 1RUD4 1RUC4 4GB34 1ASJ4 1HRI4 1PIV4 3JBG4 2PLV4 1R094 1POV0 1NCQD 1VBE4 3J8F4 2R074 1RUJ4 1AR84 1H8TD 4Q4Y4 1R084 1Z7S4 1EAH4 2R064 1K5MD 2HWB4 4RHV4 1AR64 2RS34 4Q4X4 1NA1D 1BEV4 1OOPD 1AR74 1RUI4 1RUE4 3JD74 4Q4W4 1RVF4 1RMU4 1RUF4 1D4M4 1RUH4 1VBD4 2RMU4 2RS54 2HWC4 4Q4V4 1PO24 4PDWD 1COV4 2RS14 1EV14 1VBB4 1HRV4 1AR94 1HXS4 2R044
chains in the Genus database with same CATH superfamily
5C3JA 1RUG4 4GB34 1VBA4 3AEDA 2R7FA 3GQHA 1HRI4 1PIV4 3AEEA 1POV0 3AE5A 3SUCA 4KX6A 2H88A 4YSYA 2PY5A 1XI1A 1BEV4 1YQ4A 3AE4A 3JD74 1ZOYA 1RUH4 2RMU4 4Q4V4 1EV14 1KF6A 1VBC4 2WU2A 1AL24 1PVC4 1MQTD 2WDRA 3P4PA 1RUD4 1XHXA 2WDQA 3JBG4 1R094 1XHZA 4YTPA 1RUJ4 3FI7A 1AR84 2ACZA 3GQKA 3SFDA 2PYLA 2HWB4 2PYJA 2H89A 4Q4X4 3AE1A 1AR74 2WS3A 1RUI4 4YSXA 1ZP0A 3AE8A 4Q4W4 4YXDA 1RMU4 3AE2A 1D4M4 1KFYA 1L0VA 2WDVA 3VR9A 1PO24 4YSZA 2PW9A 3CIRA 1HRV4 3VR8A 2WP9A 2RM24 1PO14 2WQYA 1VRH4 2B76A 4YTMA 1ASJ4 2EX3A 2PLV4 4YTNA 1YQ3A 1NENA 1R084 2WU5A 1AR64 1NA1D 3AE7A 4YT0A 1RUF4 3P4SA 2HWC4 3AEAA 1COV4 2RS14 3P4RA 1AR94 1HXS4 3AE9A 3AEFA 2R044 2X5ID 3VRBA 1RHI4 2RR14 1RUC4 1NEKA 3ABVA 1NCQD 1VBE4 3J8F4 3SFEA 2R074 3AE6A 3VRAA 1H8TD 4Q4Y4 1Z7S4 1EAH4 2R064 1K5MD 4RHV4 2RS34 1OOPD 5C2TA 3AEGA 1RUE4 1RVF4 3AECA 1VBD4 2RS54 3AE3A 2PZSA 3P4QA 3AEBA 4PDWD 1VBB4 2FBWA
chains in the Genus database with same CATH topology
1VBC4 2X5ID 1AL24 1PVC4 1MQTD 1RHI4 1PO14 1RUG4 1VBA4 1VRH4 2RM24 2RR14 1RUD4 1RUC4 4GB34 1ASJ4 1HRI4 1PIV4 3JBG4 2PLV4 1R094 1POV0 1NCQD 1VBE4 3J8F4 2R074 1RUJ4 1AR84 1H8TD 4Q4Y4 1R084 1Z7S4 1EAH4 2R064 1K5MD 2HWB4 4RHV4 1AR64 2RS34 4Q4X4 1NA1D 1BEV4 1OOPD 1AR74 1RUI4 1RUE4 3JD74 4Q4W4 1RVF4 1RMU4 1RUF4 1D4M4 1RUH4 1VBD4 2RMU4 2RS54 2HWC4 4Q4V4 1PO24 4PDWD 1COV4 2RS14 1EV14 1VBB4 1HRV4 1AR94 1HXS4 2R044
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBC 4;  2X5I D;  1AL2 4;  1PVC 4;  1MQT D;  1RHI 4;  1PO1 4;  1RUG 4;  1VBA 4;  1VRH 4;  2RM2 4;  2RR1 4;  1RUD 4;  1RUC 4;  4GB3 4;  1ASJ 4;  1HRI 4;  1PIV 4;  3JBG 4;  2PLV 4;  1R09 4;  1POV 0;  1NCQ D;  1VBE 4;  3J8F 4;  2R07 4;  1RUJ 4;  1AR8 4;  1H8T D;  4Q4Y 4;  1R08 4;  1Z7S 4;  1EAH 4;  2R06 4;  1K5M D;  2HWB 4;  4RHV 4;  1AR6 4;  2RS3 4;  4Q4X 4;  1NA1 D;  1BEV 4;  1OOP D;  1AR7 4;  1RUI 4;  1RUE 4;  3JD7 4;  4Q4W 4;  1RVF 4;  1RMU 4;  1RUF 4;  1D4M 4;  1RUH 4;  1VBD 4;  2RMU 4;  2RS5 4;  2HWC 4;  4Q4V 4;  1PO2 4;  4PDW D;  1COV 4;  2RS1 4;  1EV1 4;  1VBB 4;  1HRV 4;  1AR9 4;  1HXS 4;  2R04 4; 
#chains in the Genus database with same CATH topology
 5C3J A;  1RUG 4;  4GB3 4;  1VBA 4;  3AED A;  2R7F A;  3GQH A;  1HRI 4;  1PIV 4;  3AEE A;  1POV 0;  3AE5 A;  3SUC A;  4KX6 A;  2H88 A;  4YSY A;  2PY5 A;  1XI1 A;  1BEV 4;  1YQ4 A;  3AE4 A;  3JD7 4;  1ZOY A;  1RUH 4;  2RMU 4;  4Q4V 4;  1EV1 4;  1KF6 A;  1VBC 4;  2WU2 A;  1AL2 4;  1PVC 4;  1MQT D;  2WDR A;  3P4P A;  1RUD 4;  1XHX A;  2WDQ A;  3JBG 4;  1R09 4;  1XHZ A;  4YTP A;  1RUJ 4;  3FI7 A;  1AR8 4;  2ACZ A;  3GQK A;  3SFD A;  2PYL A;  2HWB 4;  2PYJ A;  2H89 A;  4Q4X 4;  3AE1 A;  1AR7 4;  2WS3 A;  1RUI 4;  4YSX A;  1ZP0 A;  3AE8 A;  4Q4W 4;  4YXD A;  1RMU 4;  3AE2 A;  1D4M 4;  1KFY A;  1L0V A;  2WDV A;  3VR9 A;  1PO2 4;  4YSZ A;  2PW9 A;  3CIR A;  1HRV 4;  3VR8 A;  2WP9 A;  2RM2 4;  1PO1 4;  2WQY A;  1VRH 4;  2B76 A;  4YTM A;  1ASJ 4;  2EX3 A;  2PLV 4;  4YTN A;  1YQ3 A;  1NEN A;  1R08 4;  2WU5 A;  1AR6 4;  1NA1 D;  3AE7 A;  4YT0 A;  1RUF 4;  3P4S A;  2HWC 4;  3AEA A;  1COV 4;  2RS1 4;  3P4R A;  1AR9 4;  1HXS 4;  3AE9 A;  3AEF A;  2R04 4;  2X5I D;  3VRB A;  1RHI 4;  2RR1 4;  1RUC 4;  1NEK A;  3ABV A;  1NCQ D;  1VBE 4;  3J8F 4;  3SFE A;  2R07 4;  3AE6 A;  3VRA A;  1H8T D;  4Q4Y 4;  1Z7S 4;  1EAH 4;  2R06 4;  1K5M D;  4RHV 4;  2RS3 4;  1OOP D;  5C2T A;  3AEG A;  1RUE 4;  1RVF 4;  3AEC A;  1VBD 4;  2RS5 4;  3AE3 A;  2PZS A;  3P4Q A;  3AEB A;  4PDW D;  1VBB 4;  2FBW A; 
#chains in the Genus database with same CATH homology
 1VBC 4;  2X5I D;  1AL2 4;  1PVC 4;  1MQT D;  1RHI 4;  1PO1 4;  1RUG 4;  1VBA 4;  1VRH 4;  2RM2 4;  2RR1 4;  1RUD 4;  1RUC 4;  4GB3 4;  1ASJ 4;  1HRI 4;  1PIV 4;  3JBG 4;  2PLV 4;  1R09 4;  1POV 0;  1NCQ D;  1VBE 4;  3J8F 4;  2R07 4;  1RUJ 4;  1AR8 4;  1H8T D;  4Q4Y 4;  1R08 4;  1Z7S 4;  1EAH 4;  2R06 4;  1K5M D;  2HWB 4;  4RHV 4;  1AR6 4;  2RS3 4;  4Q4X 4;  1NA1 D;  1BEV 4;  1OOP D;  1AR7 4;  1RUI 4;  1RUE 4;  3JD7 4;  4Q4W 4;  1RVF 4;  1RMU 4;  1RUF 4;  1D4M 4;  1RUH 4;  1VBD 4;  2RMU 4;  2RS5 4;  2HWC 4;  4Q4V 4;  1PO2 4;  4PDW D;  1COV 4;  2RS1 4;  1EV1 4;  1VBB 4;  1HRV 4;  1AR9 4;  1HXS 4;  2R04 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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