1VBE4

Poliovirus (type 3, sabin strain, mutant 242-h2) complexed with r78206
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
68
structure length
62
Chain Sequence
GAQVSSQKVGAHENSSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords POLIOVIRUS TYPE 3
publication title Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design.
pubmed doi rcsb
total genus 5
structure length 62
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1996-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1vbe400
4RHV4 1NA1D 2RS34 4Q4V4 1RUC4 1R094 1RUE4 2HWB4 1RUI4 4Q4X4 1HRI4 2R064 1PVC4 2RR14 2R074 1RVF4 1VBC4 1RUD4 4PDWD 1AR74 1POV0 1AR64 1RUF4 1VBB4 2RS14 4Q4W4 1EV14 1D4M4 1RUH4 1VBA4 1EAH4 2PLV4 3J8F4 3JD74 1HRV4 1RMU4 1RUJ4 1AR84 1HXS4 1OOPD 1PIV4 2RMU4 1H8TD 1RHI4 1PO14 2HWC4 1K5MD 1AL24 2RS54 1VBE4 4Q4Y4 1ASJ4 1NCQD 1Z7S4 1RUG4 4GB34 1AR94 1MQTD 1BEV4 1R084 1VBD4 1VRH4 2R044 1PO24 2RM24 1COV4 2X5ID 3JBG4
chains in the Genus database with same CATH superfamily
3GQKA 1R094 2WDVA 2PW9A 3AEBA 1VBC4 2WS3A 4Q4W4 1VBA4 1RUH4 2WP9A 1EAH4 3AEEA 3JD74 3AEFA 1KFYA 1AR84 3AE7A 1HXS4 1NENA 3P4RA 2H89A 2HWC4 1AL24 1VBE4 1NCQD 3VR8A 4YTPA 3CIRA 1BEV4 1R084 3VRAA 2PYJA 2PZSA 1COV4 2X5ID 4YSZA 3JBG4 3AE2A 4YTMA 1KF6A 1NA1D 2WDRA 2HWB4 4Q4X4 3SFEA 1ZP0A 1PVC4 2RR14 3AE6A 1RVF4 3GQHA 4PDWD 1AR74 1POV0 3VR9A 1VBB4 1HRV4 1EV14 1YQ3A 2WU2A 3AE1A 1PIV4 2RS54 1K5MD 4Q4Y4 3VRBA 1XI1A 1ASJ4 1Z7S4 2R044 1XHZA 2PY5A 2WQYA 3AEGA 4RHV4 3AE4A 4Q4V4 3SFDA 4YSYA 1NEKA 1ZOYA 1RUD4 3AEDA 5C2TA 3P4PA 2RS14 1D4M4 3AE8A 4YT0A 2RMU4 1OOPD 1H8TD 3AE3A 1L0VA 1RUG4 1AR94 3AE5A 1VRH4 1VBD4 3ABVA 2PYLA 1YQ4A 2RM24 3P4SA 3AECA 2WDQA 2RS34 4YXDA 1RUC4 2FBWA 1RUE4 2WU5A 1RUI4 1HRI4 2R064 2B76A 2R074 3SUCA 3AEAA 5C3JA 4YTNA 1AR64 1RUF4 1XHXA 2EX3A 2PLV4 3J8F4 2R7FA 1RMU4 1RUJ4 2ACZA 1RHI4 1PO14 4KX6A 3P4QA 3AE9A 4GB34 1MQTD 4YSXA 1PO24 2H88A 3FI7A
chains in the Genus database with same CATH topology
4RHV4 1NA1D 2RS34 4Q4V4 1RUC4 1R094 1RUE4 2HWB4 1RUI4 4Q4X4 1HRI4 2R064 1PVC4 2RR14 2R074 1RVF4 1VBC4 1RUD4 4PDWD 1AR74 1POV0 1AR64 1RUF4 1VBB4 2RS14 4Q4W4 1EV14 1D4M4 1RUH4 1VBA4 1EAH4 2PLV4 3J8F4 3JD74 1HRV4 1RMU4 1RUJ4 1AR84 1HXS4 1OOPD 1PIV4 2RMU4 1H8TD 1RHI4 1PO14 2HWC4 1K5MD 1AL24 2RS54 1VBE4 4Q4Y4 1ASJ4 1NCQD 1Z7S4 1RUG4 4GB34 1AR94 1MQTD 1BEV4 1R084 1VBD4 1VRH4 2R044 1PO24 2RM24 1COV4 2X5ID 3JBG4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RHV 4;  1NA1 D;  2RS3 4;  4Q4V 4;  1RUC 4;  1R09 4;  1RUE 4;  2HWB 4;  1RUI 4;  4Q4X 4;  1HRI 4;  2R06 4;  1PVC 4;  2RR1 4;  2R07 4;  1RVF 4;  1VBC 4;  1RUD 4;  4PDW D;  1AR7 4;  1POV 0;  1AR6 4;  1RUF 4;  1VBB 4;  2RS1 4;  4Q4W 4;  1EV1 4;  1D4M 4;  1RUH 4;  1VBA 4;  1EAH 4;  2PLV 4;  3J8F 4;  3JD7 4;  1HRV 4;  1RMU 4;  1RUJ 4;  1AR8 4;  1HXS 4;  1OOP D;  1PIV 4;  2RMU 4;  1H8T D;  1RHI 4;  1PO1 4;  2HWC 4;  1K5M D;  1AL2 4;  2RS5 4;  1VBE 4;  4Q4Y 4;  1ASJ 4;  1NCQ D;  1Z7S 4;  1RUG 4;  4GB3 4;  1AR9 4;  1MQT D;  1BEV 4;  1R08 4;  1VBD 4;  1VRH 4;  2R04 4;  1PO2 4;  2RM2 4;  1COV 4;  2X5I D;  3JBG 4; 
#chains in the Genus database with same CATH topology
 3GQK A;  1R09 4;  2WDV A;  2PW9 A;  3AEB A;  1VBC 4;  2WS3 A;  4Q4W 4;  1VBA 4;  1RUH 4;  2WP9 A;  1EAH 4;  3AEE A;  3JD7 4;  3AEF A;  1KFY A;  1AR8 4;  3AE7 A;  1HXS 4;  1NEN A;  3P4R A;  2H89 A;  2HWC 4;  1AL2 4;  1VBE 4;  1NCQ D;  3VR8 A;  4YTP A;  3CIR A;  1BEV 4;  1R08 4;  3VRA A;  2PYJ A;  2PZS A;  1COV 4;  2X5I D;  4YSZ A;  3JBG 4;  3AE2 A;  4YTM A;  1KF6 A;  1NA1 D;  2WDR A;  2HWB 4;  4Q4X 4;  3SFE A;  1ZP0 A;  1PVC 4;  2RR1 4;  3AE6 A;  1RVF 4;  3GQH A;  4PDW D;  1AR7 4;  1POV 0;  3VR9 A;  1VBB 4;  1HRV 4;  1EV1 4;  1YQ3 A;  2WU2 A;  3AE1 A;  1PIV 4;  2RS5 4;  1K5M D;  4Q4Y 4;  3VRB A;  1XI1 A;  1ASJ 4;  1Z7S 4;  2R04 4;  1XHZ A;  2PY5 A;  2WQY A;  3AEG A;  4RHV 4;  3AE4 A;  4Q4V 4;  3SFD A;  4YSY A;  1NEK A;  1ZOY A;  1RUD 4;  3AED A;  5C2T A;  3P4P A;  2RS1 4;  1D4M 4;  3AE8 A;  4YT0 A;  2RMU 4;  1OOP D;  1H8T D;  3AE3 A;  1L0V A;  1RUG 4;  1AR9 4;  3AE5 A;  1VRH 4;  1VBD 4;  3ABV A;  2PYL A;  1YQ4 A;  2RM2 4;  3P4S A;  3AEC A;  2WDQ A;  2RS3 4;  4YXD A;  1RUC 4;  2FBW A;  1RUE 4;  2WU5 A;  1RUI 4;  1HRI 4;  2R06 4;  2B76 A;  2R07 4;  3SUC A;  3AEA A;  5C3J A;  4YTN A;  1AR6 4;  1RUF 4;  1XHX A;  2EX3 A;  2PLV 4;  3J8F 4;  2R7F A;  1RMU 4;  1RUJ 4;  2ACZ A;  1RHI 4;  1PO1 4;  4KX6 A;  3P4Q A;  3AE9 A;  4GB3 4;  1MQT D;  4YSX A;  1PO2 4;  2H88 A;  3FI7 A; 
#chains in the Genus database with same CATH homology
 4RHV 4;  1NA1 D;  2RS3 4;  4Q4V 4;  1RUC 4;  1R09 4;  1RUE 4;  2HWB 4;  1RUI 4;  4Q4X 4;  1HRI 4;  2R06 4;  1PVC 4;  2RR1 4;  2R07 4;  1RVF 4;  1VBC 4;  1RUD 4;  4PDW D;  1AR7 4;  1POV 0;  1AR6 4;  1RUF 4;  1VBB 4;  2RS1 4;  4Q4W 4;  1EV1 4;  1D4M 4;  1RUH 4;  1VBA 4;  1EAH 4;  2PLV 4;  3J8F 4;  3JD7 4;  1HRV 4;  1RMU 4;  1RUJ 4;  1AR8 4;  1HXS 4;  1OOP D;  1PIV 4;  2RMU 4;  1H8T D;  1RHI 4;  1PO1 4;  2HWC 4;  1K5M D;  1AL2 4;  2RS5 4;  1VBE 4;  4Q4Y 4;  1ASJ 4;  1NCQ D;  1Z7S 4;  1RUG 4;  4GB3 4;  1AR9 4;  1MQT D;  1BEV 4;  1R08 4;  1VBD 4;  1VRH 4;  2R04 4;  1PO2 4;  2RM2 4;  1COV 4;  2X5I D;  3JBG 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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