1VBOA

Crystal structure of artocarpin-mannotriose complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
148
structure length
148
Chain Sequence
SQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords artocarpin
publication title Structural basis for the carbohydrate specificities of artocarpin: variation in the length of a loop as a strategy for generating ligand specificity
pubmed doi rcsb
total genus 26
structure length 148
sequence length 148
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2004-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1vboA00
3WOCA 5J4XA 2JZ4A 5AV7A 2GTYA 3R50A 1JOTA 4R6PA 1UGWA 2GUDA 4R6OA 4GX7A 3R51A 1XEZA 1XXRA 3LM1A 3MIUA 1UGXA 1M26A 4R6NA 1J4SA 1ZGSA 3MIVA 4WOGA 2HYRA 3APAA 1TP8A 2NU5A 4R6QA 1VBOA 1J4TA 1XXQA 4AK4A 1UH0A 3P8SA 3O44A 4R6RA 5EXGA 2BN0A 1OUWA 2GUXA 1VBPA 4PITA 3VZEA 3VZGA 1UGYC 1WS4C 1PXDA 3R52A 5JM1A 1C3NA 3LL0A 1WS5A 1TOQA 3LLZA 3LL2A 3AQGA 3MITA 3VY7A 1UGWC 4MQ0A 4PIUA 2BMZA 2HYQA 5J50A 3WOBA 1UH1A 1JACA 4AKCA 5BN6E 4PIKA 2GUCA 1KU8A 4AKDA 3VY6A 2NUOA 3LKYA 4PIFA 4AKBA 1WS5C 1UGYA 1KUJA 3LLYA 1WS4A 2BMYA 5J4TA 1C3KA 1ZGRA 4DDNA 1X1VA 5J51A 3LL1A 1C3MA 2GUEA 1J4UA 3VZFA
chains in the Genus database with same CATH superfamily
3WOCA 4QX3A 5J4XA 2JZ4A 5AV7A 2GTYA 4QX2A 3R50A 1JOTA 4R6PA 1UGWA 2GUDA 4R6OA 4GX7A 4ARYA 3R51A 1XEZA 1XXRA 1I5PA 1W99A 3LM1A 3MIUA 1UGXA 4W8JA 1M26A 4R6NA 1J4SA 1ZGSA 3MIVA 4WOGA 2HYRA 3APAA 1TP8A 2NU5A 4QX1A 4R6QA 1VBOA 1J4TA 1XXQA 4AK4A 1UH0A 3P8SA 3O44A 4D8MA 4R6RA 2QP2A 5EXGA 2BN0A 1OUWA 2GUXA 1VBPA 4PITA 3VZEA 3VZGA 1UGYC 1WS4C 1PXDA 3R52A 4ARXA 1C3NA 5JM1A 1JI6A 3LL0A 1WS5A 1TOQA 3LLZA 3LL2A 3AQGA 3MITA 3VY7A 1UGWC 4MQ0A 4PIUA 2BMZA 2HYQA 5J50A 2C9KA 3WOBA 1UH1A 3TOWA 1CIYA 1JACA 4AKCA 5BN6E 4PIKA 2GUCA 1KU8A 4AKDA 3VY6A 2NUOA 3LKYA 4PIFA 1VMOA 4AKBA 1WS5C 1DLCA 1UGYA 1KUJA 3LLYA 1WS4A 2BMYA 5J4TA 1C3KA 1ZGRA 3EB7A 4DDNA 1X1VA 5J51A 3LL1A 1C3MA 2GUEA 1J4UA 3VZFA 4QX0A 4MOAA
chains in the Genus database with same CATH topology
3WOCA 5J4XA 2JZ4A 5AV7A 2GTYA 3R50A 1JOTA 4R6PA 1UGWA 2GUDA 4R6OA 4GX7A 3R51A 1XEZA 1XXRA 3LM1A 3MIUA 1UGXA 1M26A 4R6NA 1J4SA 1ZGSA 3MIVA 4WOGA 2HYRA 3APAA 1TP8A 2NU5A 4R6QA 1VBOA 1J4TA 1XXQA 4AK4A 1UH0A 3P8SA 3O44A 4R6RA 5EXGA 2BN0A 1OUWA 2GUXA 1VBPA 4PITA 3VZEA 3VZGA 1UGYC 1WS4C 1PXDA 3R52A 5JM1A 1C3NA 3LL0A 1WS5A 1TOQA 3LLZA 3LL2A 3AQGA 3MITA 3VY7A 1UGWC 4MQ0A 4PIUA 2BMZA 2HYQA 5J50A 3WOBA 1UH1A 1JACA 4AKCA 5BN6E 4PIKA 2GUCA 1KU8A 4AKDA 3VY6A 2NUOA 3LKYA 4PIFA 4AKBA 1WS5C 1UGYA 1KUJA 3LLYA 1WS4A 2BMYA 5J4TA 1C3KA 1ZGRA 4DDNA 1X1VA 5J51A 3LL1A 1C3MA 2GUEA 1J4UA 3VZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WOC A;  5J4X A;  2JZ4 A;  5AV7 A;  2GTY A;  3R50 A;  1JOT A;  4R6P A;  1UGW A;  2GUD A;  4R6O A;  4GX7 A;  3R51 A;  1XEZ A;  1XXR A;  3LM1 A;  3MIU A;  1UGX A;  1M26 A;  4R6N A;  1J4S A;  1ZGS A;  3MIV A;  4WOG A;  2HYR A;  3APA A;  1TP8 A;  2NU5 A;  4R6Q A;  1VBO A;  1J4T A;  1XXQ A;  4AK4 A;  1UH0 A;  3P8S A;  3O44 A;  4R6R A;  5EXG A;  2BN0 A;  1OUW A;  2GUX A;  1VBP A;  4PIT A;  3VZE A;  3VZG A;  1UGY C;  1WS4 C;  1PXD A;  3R52 A;  5JM1 A;  1C3N A;  3LL0 A;  1WS5 A;  1TOQ A;  3LLZ A;  3LL2 A;  3AQG A;  3MIT A;  3VY7 A;  1UGW C;  4MQ0 A;  4PIU A;  2BMZ A;  2HYQ A;  5J50 A;  3WOB A;  1UH1 A;  1JAC A;  4AKC A;  5BN6 E;  4PIK A;  2GUC A;  1KU8 A;  4AKD A;  3VY6 A;  2NUO A;  3LKY A;  4PIF A;  4AKB A;  1WS5 C;  1UGY A;  1KUJ A;  3LLY A;  1WS4 A;  2BMY A;  5J4T A;  1C3K A;  1ZGR A;  4DDN A;  1X1V A;  5J51 A;  3LL1 A;  1C3M A;  2GUE A;  1J4U A;  3VZF A; 
#chains in the Genus database with same CATH topology
 3WOC A;  4QX3 A;  5J4X A;  2JZ4 A;  5AV7 A;  2GTY A;  4QX2 A;  3R50 A;  1JOT A;  4R6P A;  1UGW A;  2GUD A;  4R6O A;  4GX7 A;  4ARY A;  3R51 A;  1XEZ A;  1XXR A;  1I5P A;  1W99 A;  3LM1 A;  3MIU A;  1UGX A;  4W8J A;  1M26 A;  4R6N A;  1J4S A;  1ZGS A;  3MIV A;  4WOG A;  2HYR A;  3APA A;  1TP8 A;  2NU5 A;  4QX1 A;  4R6Q A;  1VBO A;  1J4T A;  1XXQ A;  4AK4 A;  1UH0 A;  3P8S A;  3O44 A;  4D8M A;  4R6R A;  2QP2 A;  5EXG A;  2BN0 A;  1OUW A;  2GUX A;  1VBP A;  4PIT A;  3VZE A;  3VZG A;  1UGY C;  1WS4 C;  1PXD A;  3R52 A;  4ARX A;  1C3N A;  5JM1 A;  1JI6 A;  3LL0 A;  1WS5 A;  1TOQ A;  3LLZ A;  3LL2 A;  3AQG A;  3MIT A;  3VY7 A;  1UGW C;  4MQ0 A;  4PIU A;  2BMZ A;  2HYQ A;  5J50 A;  2C9K A;  3WOB A;  1UH1 A;  3TOW A;  1CIY A;  1JAC A;  4AKC A;  5BN6 E;  4PIK A;  2GUC A;  1KU8 A;  4AKD A;  3VY6 A;  2NUO A;  3LKY A;  4PIF A;  1VMO A;  4AKB A;  1WS5 C;  1DLC A;  1UGY A;  1KUJ A;  3LLY A;  1WS4 A;  2BMY A;  5J4T A;  1C3K A;  1ZGR A;  3EB7 A;  4DDN A;  1X1V A;  5J51 A;  3LL1 A;  1C3M A;  2GUE A;  1J4U A;  3VZF A;  4QX0 A;  4MOA A; 
#chains in the Genus database with same CATH homology
 3WOC A;  5J4X A;  2JZ4 A;  5AV7 A;  2GTY A;  3R50 A;  1JOT A;  4R6P A;  1UGW A;  2GUD A;  4R6O A;  4GX7 A;  3R51 A;  1XEZ A;  1XXR A;  3LM1 A;  3MIU A;  1UGX A;  1M26 A;  4R6N A;  1J4S A;  1ZGS A;  3MIV A;  4WOG A;  2HYR A;  3APA A;  1TP8 A;  2NU5 A;  4R6Q A;  1VBO A;  1J4T A;  1XXQ A;  4AK4 A;  1UH0 A;  3P8S A;  3O44 A;  4R6R A;  5EXG A;  2BN0 A;  1OUW A;  2GUX A;  1VBP A;  4PIT A;  3VZE A;  3VZG A;  1UGY C;  1WS4 C;  1PXD A;  3R52 A;  5JM1 A;  1C3N A;  3LL0 A;  1WS5 A;  1TOQ A;  3LLZ A;  3LL2 A;  3AQG A;  3MIT A;  3VY7 A;  1UGW C;  4MQ0 A;  4PIU A;  2BMZ A;  2HYQ A;  5J50 A;  3WOB A;  1UH1 A;  1JAC A;  4AKC A;  5BN6 E;  4PIK A;  2GUC A;  1KU8 A;  4AKD A;  3VY6 A;  2NUO A;  3LKY A;  4PIF A;  4AKB A;  1WS5 C;  1UGY A;  1KUJ A;  3LLY A;  1WS4 A;  2BMY A;  5J4T A;  1C3K A;  1ZGR A;  4DDN A;  1X1V A;  5J51 A;  3LL1 A;  1C3M A;  2GUE A;  1J4U A;  3VZF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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