1VC1A

Crystal structure of the tm1442 protein from thermotoga maritima, a homolog of the bacillus subtilis general stress response anti-anti-sigma factor rsbv
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
110
structure length
110
Chain Sequence
MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Putative anti-sigma factor antagonist TM1442
publication title Crystal structure of the TM1442 protein from Thermotoga maritima, a homolog of the Bacillus subtilis general stress response anti-anti-sigma factor RsbV
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Gene regulation
total genus 41
structure length 110
sequence length 110
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1vc1A00
2VY9A 3AGDA 2KLNA 3T6OA 5EZBA 1H4ZA 4HYLA 2KA5A 3AGEA 3IH9A 3IHAA 5EUXA 1SBOA 3IF5A 3MGLA 5EUZA 1T6RA 5EUWA 3F43A 3IHBA 1TILB 1TH8B 3OIRA 4XS5A 5EUSA 1THNB 3ZTBA 1TIDB 1H4XA 3LLOA 3ZXNA 3OIZA 3LKLA 5EUUA 4QTPA 1BUZA 3NY7A 4DGHA 1VC1A 1H4YA 4DGFA 1AUZA 3IH8A
chains in the Genus database with same CATH superfamily
1WXWA 2AS0A 3T6OA 1FC6A 3MOGA 3D03A 4DMGA 3D3UA 3F43A 3DJAA 3GVLA 1THNB 1BUZA 4HIZA 3LDFA 4DGHA 4L8KA 1WXXA 4DGFA 1HF2A 2VY9A 3AGDA 2KLNA 2DXLA 4L1CA 3V8VA 2DXNA 5EZBA 1H4ZA 4HYLA 3QDQA 3AGEA 3IH9A 5EUXA 3MGLA 3OIRA 3VSEA 1H4XA 2OASA 3EH7A 3DORA 3JU4A 3GVKA 2RRLA 1N6DA 1N6EA 2KA5A 3IHAA 3IF5A 5EUZA 1J7XA 5EUWA 3ZTBA 1TILB 1TH8B 4JC0A 1TIDB 3ZXNA 3OIZA 5EUUA 2CWWA 3GMFA 1N6FA 3GHFA 3K50A 1FC7A 3C0KA 1FC9A 1H4YA 1K32A 1AUZA 3IHBA 3IH8A 3GVJA 1FCFA 4AEJA 2B78A 1SBOA 1T6RA 3DUPA 5EUSA 4XS5A 2ZOAA 4AE2A 1V0FA 3LLOA 3LKLA 1BPLA 2ZO9B 4QTPA 3GK7A 1V0EA 4GHNA 3NY7A 1VC1A 3V97A
chains in the Genus database with same CATH topology
2VY9A 3AGDA 2KLNA 3T6OA 5EZBA 1H4ZA 4HYLA 2KA5A 3AGEA 3IH9A 3IHAA 5EUXA 1SBOA 3IF5A 3MGLA 5EUZA 1T6RA 5EUWA 3F43A 3IHBA 1TILB 1TH8B 3OIRA 4XS5A 5EUSA 1THNB 3ZTBA 1TIDB 1H4XA 3LLOA 3ZXNA 3OIZA 3LKLA 5EUUA 4QTPA 1BUZA 3NY7A 4DGHA 1VC1A 1H4YA 4DGFA 1AUZA 3IH8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VY9 A;  3AGD A;  2KLN A;  3T6O A;  5EZB A;  1H4Z A;  4HYL A;  2KA5 A;  3AGE A;  3IH9 A;  3IHA A;  5EUX A;  1SBO A;  3IF5 A;  3MGL A;  5EUZ A;  1T6R A;  5EUW A;  3F43 A;  3IHB A;  1TIL B;  1TH8 B;  3OIR A;  4XS5 A;  5EUS A;  1THN B;  3ZTB A;  1TID B;  1H4X A;  3LLO A;  3ZXN A;  3OIZ A;  3LKL A;  5EUU A;  4QTP A;  1BUZ A;  3NY7 A;  4DGH A;  1VC1 A;  1H4Y A;  4DGF A;  1AUZ A;  3IH8 A; 
#chains in the Genus database with same CATH topology
 1WXW A;  2AS0 A;  3T6O A;  1FC6 A;  3MOG A;  3D03 A;  4DMG A;  3D3U A;  3F43 A;  3DJA A;  3GVL A;  1THN B;  1BUZ A;  4HIZ A;  3LDF A;  4DGH A;  4L8K A;  1WXX A;  4DGF A;  1HF2 A;  2VY9 A;  3AGD A;  2KLN A;  2DXL A;  4L1C A;  3V8V A;  2DXN A;  5EZB A;  1H4Z A;  4HYL A;  3QDQ A;  3AGE A;  3IH9 A;  5EUX A;  3MGL A;  3OIR A;  3VSE A;  1H4X A;  2OAS A;  3EH7 A;  3DOR A;  3JU4 A;  3GVK A;  2RRL A;  1N6D A;  1N6E A;  2KA5 A;  3IHA A;  3IF5 A;  5EUZ A;  1J7X A;  5EUW A;  3ZTB A;  1TIL B;  1TH8 B;  4JC0 A;  1TID B;  3ZXN A;  3OIZ A;  5EUU A;  2CWW A;  3GMF A;  1N6F A;  3GHF A;  3K50 A;  1FC7 A;  3C0K A;  1FC9 A;  1H4Y A;  1K32 A;  1AUZ A;  3IHB A;  3IH8 A;  3GVJ A;  1FCF A;  4AEJ A;  2B78 A;  1SBO A;  1T6R A;  3DUP A;  5EUS A;  4XS5 A;  2ZOA A;  4AE2 A;  1V0F A;  3LLO A;  3LKL A;  1BPL A;  2ZO9 B;  4QTP A;  3GK7 A;  1V0E A;  4GHN A;  3NY7 A;  1VC1 A;  3V97 A; 
#chains in the Genus database with same CATH homology
 2VY9 A;  3AGD A;  2KLN A;  3T6O A;  5EZB A;  1H4Z A;  4HYL A;  2KA5 A;  3AGE A;  3IH9 A;  3IHA A;  5EUX A;  1SBO A;  3IF5 A;  3MGL A;  5EUZ A;  1T6R A;  5EUW A;  3F43 A;  3IHB A;  1TIL B;  1TH8 B;  3OIR A;  4XS5 A;  5EUS A;  1THN B;  3ZTB A;  1TID B;  1H4X A;  3LLO A;  3ZXN A;  3OIZ A;  3LKL A;  5EUU A;  4QTP A;  1BUZ A;  3NY7 A;  4DGH A;  1VC1 A;  1H4Y A;  4DGF A;  1AUZ A;  3IH8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...