1VC1A

Crystal structure of the tm1442 protein from thermotoga maritima, a homolog of the bacillus subtilis general stress response anti-anti-sigma factor rsbv
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
110
structure length
110
Chain Sequence
b'MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Putative anti-sigma factor antagonist TM1442
publication title Crystal structure of the TM1442 protein from Thermotoga maritima, a homolog of the Bacillus subtilis general stress response anti-anti-sigma factor RsbV
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Gene regulation
total genus 41
structure length 110
sequence length 110
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1vc1A00
5EUZA 4XS5A 4QTPA 3AGDA 2KLNA 3LLOA 1AUZA 2VY9A 1H4YA 5EUWA 3IHBA 3MGLA 1H4ZA 1TILB 3IH8A 3T6OA 3OIZA 3F43A 5EUXA 1BUZA 3IF5A 3AGEA 3NY7A 1THNB 3ZXNA 3IH9A 5EZBA 3IHAA 1SBOA 2KA5A 3LKLA 4DGHA 4DGFA 3OIRA 1T6RA 4HYLA 1TH8B 1H4XA 1TIDB 5EUUA 5EUSA 3ZTBA 1VC1A
chains in the Genus database with same CATH superfamily
3LLOA 3DUPA 3MGLA 1H4ZA 4DMGA 1N6FA 3T6OA 3OIZA 3D3UA 2ZOAA 1BUZA 1J7XA 3GK7A 3IHAA 1SBOA 1HF2A 3LKLA 4AEJA 1T6RA 4HYLA 1N6EA 1WXWA 1TH8B 5EUSA 2DXLA 1K32A 4XS5A 1FC9A 3C0KA 1AUZA 2VY9A 1H4YA 2ZO9B 3GHFA 5EUXA 1WXXA 1V0EA 3AGEA 3IF5A 3V8VA 2AS0A 5EZBA 3D03A 3OIRA 1TIDB 5EUUA 4HIZA 4QTPA 3AGDA 3V97A 4GHNA 1V0FA 3DORA 1TILB 4JC0A 2OASA 3NY7A 1THNB 3ZXNA 3GVLA 3IH9A 2KA5A 3GVKA 3LDFA 4DGHA 4DGFA 2DXNA 3ZTBA 1VC1A 5EUZA 2B78A 2KLNA 1FC6A 3K50A 5EUWA 3IHBA 4AE2A 3JU4A 2CWWA 3QDQA 3EH7A 3IH8A 1FC7A 3F43A 1N6DA 3GMFA 3VSEA 3GVJA 3DJAA 3MOGA 4L8KA 4L1CA 1H4XA 1FCFA 1BPLA 2RRLA
chains in the Genus database with same CATH topology
5EUZA 4XS5A 4QTPA 3AGDA 2KLNA 3LLOA 1AUZA 2VY9A 1H4YA 5EUWA 3IHBA 3MGLA 1H4ZA 1TILB 3IH8A 3T6OA 3OIZA 3F43A 5EUXA 1BUZA 3IF5A 3AGEA 3NY7A 1THNB 3ZXNA 3IH9A 5EZBA 3IHAA 1SBOA 2KA5A 3LKLA 4DGHA 4DGFA 3OIRA 1T6RA 4HYLA 1TH8B 1H4XA 1TIDB 5EUUA 5EUSA 3ZTBA 1VC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EUZ A;  4XS5 A;  4QTP A;  3AGD A;  2KLN A;  3LLO A;  1AUZ A;  2VY9 A;  1H4Y A;  5EUW A;  3IHB A;  3MGL A;  1H4Z A;  1TIL B;  3IH8 A;  3T6O A;  3OIZ A;  3F43 A;  5EUX A;  1BUZ A;  3IF5 A;  3AGE A;  3NY7 A;  1THN B;  3ZXN A;  3IH9 A;  5EZB A;  3IHA A;  1SBO A;  2KA5 A;  3LKL A;  4DGH A;  4DGF A;  3OIR A;  1T6R A;  4HYL A;  1TH8 B;  1H4X A;  1TID B;  5EUU A;  5EUS A;  3ZTB A;  1VC1 A; 
#chains in the Genus database with same CATH topology
 3LLO A;  3DUP A;  3MGL A;  1H4Z A;  4DMG A;  1N6F A;  3T6O A;  3OIZ A;  3D3U A;  2ZOA A;  1BUZ A;  1J7X A;  3GK7 A;  3IHA A;  1SBO A;  1HF2 A;  3LKL A;  4AEJ A;  1T6R A;  4HYL A;  1N6E A;  1WXW A;  1TH8 B;  5EUS A;  2DXL A;  1K32 A;  4XS5 A;  1FC9 A;  3C0K A;  1AUZ A;  2VY9 A;  1H4Y A;  2ZO9 B;  3GHF A;  5EUX A;  1WXX A;  1V0E A;  3AGE A;  3IF5 A;  3V8V A;  2AS0 A;  5EZB A;  3D03 A;  3OIR A;  1TID B;  5EUU A;  4HIZ A;  4QTP A;  3AGD A;  3V97 A;  4GHN A;  1V0F A;  3DOR A;  1TIL B;  4JC0 A;  2OAS A;  3NY7 A;  1THN B;  3ZXN A;  3GVL A;  3IH9 A;  2KA5 A;  3GVK A;  3LDF A;  4DGH A;  4DGF A;  2DXN A;  3ZTB A;  1VC1 A;  5EUZ A;  2B78 A;  2KLN A;  1FC6 A;  3K50 A;  5EUW A;  3IHB A;  4AE2 A;  3JU4 A;  2CWW A;  3QDQ A;  3EH7 A;  3IH8 A;  1FC7 A;  3F43 A;  1N6D A;  3GMF A;  3VSE A;  3GVJ A;  3DJA A;  3MOG A;  4L8K A;  4L1C A;  1H4X A;  1FCF A;  1BPL A;  2RRL A; 
#chains in the Genus database with same CATH homology
 5EUZ A;  4XS5 A;  4QTP A;  3AGD A;  2KLN A;  3LLO A;  1AUZ A;  2VY9 A;  1H4Y A;  5EUW A;  3IHB A;  3MGL A;  1H4Z A;  1TIL B;  3IH8 A;  3T6O A;  3OIZ A;  3F43 A;  5EUX A;  1BUZ A;  3IF5 A;  3AGE A;  3NY7 A;  1THN B;  3ZXN A;  3IH9 A;  5EZB A;  3IHA A;  1SBO A;  2KA5 A;  3LKL A;  4DGH A;  4DGF A;  3OIR A;  1T6R A;  4HYL A;  1TH8 B;  1H4X A;  1TID B;  5EUU A;  5EUS A;  3ZTB A;  1VC1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...