1VCBB

The vhl-elonginc-elonginb structure
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
96
structure length
88
Chain Sequence
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords PROTEIN (ELONGIN B)
publication title Structure of the VHL-ElonginC-ElonginB complex: implications for VHL tumor suppressor function.
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 88
sequence length 96
chains with identical sequence E, H, K
ec nomenclature
pdb deposition date 1999-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1vcbB00
2R9RB 4W9DB 3ZNGB 1R28A 2YY9A 3OGLA 4UIJA 3OHVA 1EXBE 3HTMA 4JTDB 3ZUNB 3M8VA 3HQIA 1LM8C 1QDVA 1EODA 4BGCA 2P1QA 1FQVB 3HVEA 3ZRFB 2PPIA 4BKTB 2E32B 5BXDA 3ZTDB 2I2RA 2Q81A 3M5BA 5H7HA 3C6OA 5HYWB 4AP2A 1R2BA 4W9IB 3LNMB 1T1DA 1P22B 2OVQA 5EUPA 5H7GA 4UYIA 2C9WC 3M52A 5IBKA 4W9CB 4EOZA 5JH5B 5HZGC 1NN7A 5BXBA 1BUOA 2E31B 3DRZA 3ZRCB 3WSOB 4B95B 1EOEA 4W9JB 2IHCA 4ZOUA 2P1MA 5BO4C 3LBZA 4U2MA 4BKSB 4CXJA 1LDKD 4N9F5 2P1PA 4W9EB 4APFA 4CXTA 1R29A 4U77A 5A15A 4CP3A 2NZ0B 1VCBB 1HV2A 3V7DA 1S1GA 1CS3A 2P1NA 3KVTA 2ASTA 3E4UA 3LUTB 4W9FB 3ZKJB 4JTCB 5LLIB 3L2OA 2ASSA 3C6PA 2IF5A 4U2NA 4W9LB 3OGKA 2MA9C 1A68A 5BXHA 4W9KB 1FS1B 3OHUA 4AWJB 1LQBB 1QDWA 1DSXA 4HXIA 3HU6A 3DCGB 3M4TA 4J8ZA 2OVRA 3C6NA 2FNJC 5A6RA 1NEXA 1FS2B 3FKCA 5DAFA 4B9KE 2P1OA 4JGHC 4JTAB 4CXIA 4AJYC 2VKPA 3MKSA 2VPKA 3I3NA 3B84A 4I6JC 5DADA 2NN2A 4W9HB 2JZ3C 2Z8HA 3OGMA 4B9KB 2A79B 4CRHA 3BIMA 3ZTCB 4WQOC 4W9GB 1EOFA 2IZVC 3GA1A 5FTAA 4W9HH 2OVPA 3HVEB
chains in the Genus database with same CATH superfamily
2R9RB 4W9DB 3ZNGB 1R28A 2YY9A 3OGLA 4UIJA 3OHVA 1EXBE 3HTMA 4JTDB 3ZUNB 3M8VA 3HQIA 1LM8C 1QDVA 1EODA 4BGCA 2P1QA 1FQVB 3HVEA 3DRXA 2PPIA 3ZRFB 2E32B 4BKTB 5BXDA 3ZTDB 2I2RA 2Q81A 3M5BA 5H7HA 3C6OA 5HYWB 4AP2A 1R2BA 4W9IB 3LNMB 1T1DA 1P22B 2OVQA 5EUPA 4ZGCA 5H7GA 4UYIA 2C9WC 3M52A 5IBKA 4W9CB 4EOZA 5JH5B 5HZGC 1NN7A 5BXBA 1BUOA 2E31B 3DRZA 3ZRCB 3WSOB 4B95B 1EOEA 4W9JB 2IHCA 4ZOUA 2P1MA 5BO4C 3LBZA 4U2MA 4BKSB 4CXJA 1LDKD 4N9F5 2P1PA 4W9EB 4APFA 4CXTA 1R29A 4U77A 5A15A 4CP3A 2NZ0B 1VCBB 1HV2A 3V7DA 1S1GA 1CS3A 2P1NA 4YY8A 3KVTA 2ASTA 3E4UA 3LUTB 4W9FB 3ZKJB 4JTCB 5LLIB 3L2OA 2ASSA 3C6PA 2IF5A 4U2NA 4W9LB 3OGKA 2MA9C 1A68A 5BXHA 4W9KB 3DRYA 1FS1B 3OHUA 4AWJB 1LQBB 1QDWA 1DSXA 4HXIA 3HU6A 3DCGB 3M4TA 4J8ZA 2OVRA 3C6NA 2FNJC 5A6RA 1NEXA 1FS2B 3FKCA 5DAFA 4B9KE 2P1OA 4JGHC 4JTAB 4CXIA 4AJYC 2VKPA 3MKSA 2VPKA 3I3NA 3B84A 4I6JC 5DADA 2NN2A 4W9HB 2JZ3C 2Z8HA 3OGMA 4B9KB 2A79B 4CRHA 3BIMA 3ZTCB 4WQOC 4W9GB 1EOFA 2IZVC 3GA1A 5FTAA 4W9HH 2OVPA 3HVEB
chains in the Genus database with same CATH topology
2R9RB 4W9DB 3ZNGB 1R28A 2YY9A 3OGLA 4UIJA 3OHVA 1EXBE 3HTMA 4JTDB 3ZUNB 3M8VA 3HQIA 1LM8C 1QDVA 1EODA 4BGCA 2P1QA 1FQVB 3HVEA 3DRXA 2PPIA 3ZRFB 2E32B 4BKTB 5BXDA 3ZTDB 2I2RA 2Q81A 3M5BA 5H7HA 3C6OA 5HYWB 4AP2A 1R2BA 4W9IB 3LNMB 1T1DA 1P22B 2OVQA 5EUPA 4ZGCA 5H7GA 4UYIA 2C9WC 3M52A 5IBKA 4W9CB 4EOZA 5JH5B 5HZGC 1NN7A 5BXBA 1BUOA 2E31B 3DRZA 3ZRCB 3WSOB 4B95B 1EOEA 4W9JB 2IHCA 4ZOUA 2P1MA 5BO4C 3LBZA 4U2MA 4BKSB 4CXJA 1LDKD 4N9F5 2P1PA 4W9EB 4APFA 4CXTA 1R29A 4U77A 5A15A 4CP3A 2NZ0B 1VCBB 1HV2A 3V7DA 1S1GA 1CS3A 2P1NA 4YY8A 3KVTA 2ASTA 3E4UA 3LUTB 4W9FB 3ZKJB 4JTCB 5LLIB 3L2OA 2ASSA 3C6PA 2IF5A 4U2NA 4W9LB 3OGKA 2MA9C 1A68A 5BXHA 4W9KB 3DRYA 1FS1B 3OHUA 4AWJB 1LQBB 1QDWA 1DSXA 4HXIA 3HU6A 3DCGB 3M4TA 4J8ZA 2OVRA 3C6NA 2FNJC 5A6RA 1NEXA 1FS2B 3FKCA 5DAFA 4B9KE 2P1OA 4JGHC 4JTAB 4CXIA 4AJYC 2VKPA 3MKSA 2VPKA 3I3NA 3B84A 4I6JC 5DADA 2NN2A 4W9HB 2JZ3C 2Z8HA 3OGMA 4B9KB 2A79B 4CRHA 3BIMA 3ZTCB 4WQOC 4W9GB 1EOFA 2IZVC 3GA1A 5FTAA 4W9HH 2OVPA 3HVEB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R9R B;  4W9D B;  3ZNG B;  1R28 A;  2YY9 A;  3OGL A;  4UIJ A;  3OHV A;  1EXB E;  3HTM A;  4JTD B;  3ZUN B;  3M8V A;  3HQI A;  1LM8 C;  1QDV A;  1EOD A;  4BGC A;  2P1Q A;  1FQV B;  3HVE A;  3ZRF B;  2PPI A;  4BKT B;  2E32 B;  5BXD A;  3ZTD B;  2I2R A;  2Q81 A;  3M5B A;  5H7H A;  3C6O A;  5HYW B;  4AP2 A;  1R2B A;  4W9I B;  3LNM B;  1T1D A;  1P22 B;  2OVQ A;  5EUP A;  5H7G A;  4UYI A;  2C9W C;  3M52 A;  5IBK A;  4W9C B;  4EOZ A;  5JH5 B;  5HZG C;  1NN7 A;  5BXB A;  1BUO A;  2E31 B;  3DRZ A;  3ZRC B;  3WSO B;  4B95 B;  1EOE A;  4W9J B;  2IHC A;  4ZOU A;  2P1M A;  5BO4 C;  3LBZ A;  4U2M A;  4BKS B;  4CXJ A;  1LDK D;  4N9F 5;  2P1P A;  4W9E B;  4APF A;  4CXT A;  1R29 A;  4U77 A;  5A15 A;  4CP3 A;  2NZ0 B;  1VCB B;  1HV2 A;  3V7D A;  1S1G A;  1CS3 A;  2P1N A;  3KVT A;  2AST A;  3E4U A;  3LUT B;  4W9F B;  3ZKJ B;  4JTC B;  5LLI B;  3L2O A;  2ASS A;  3C6P A;  2IF5 A;  4U2N A;  4W9L B;  3OGK A;  2MA9 C;  1A68 A;  5BXH A;  4W9K B;  1FS1 B;  3OHU A;  4AWJ B;  1LQB B;  1QDW A;  1DSX A;  4HXI A;  3HU6 A;  3DCG B;  3M4T A;  4J8Z A;  2OVR A;  3C6N A;  2FNJ C;  5A6R A;  1NEX A;  1FS2 B;  3FKC A;  5DAF A;  4B9K E;  2P1O A;  4JGH C;  4JTA B;  4CXI A;  4AJY C;  2VKP A;  3MKS A;  2VPK A;  3I3N A;  3B84 A;  4I6J C;  5DAD A;  2NN2 A;  4W9H B;  2JZ3 C;  2Z8H A;  3OGM A;  4B9K B;  2A79 B;  4CRH A;  3BIM A;  3ZTC B;  4WQO C;  4W9G B;  1EOF A;  2IZV C;  3GA1 A;  5FTA A;  4W9H H;  2OVP A;  3HVE B; 
#chains in the Genus database with same CATH topology
 2R9R B;  4W9D B;  3ZNG B;  1R28 A;  2YY9 A;  3OGL A;  4UIJ A;  3OHV A;  1EXB E;  3HTM A;  4JTD B;  3ZUN B;  3M8V A;  3HQI A;  1LM8 C;  1QDV A;  1EOD A;  4BGC A;  2P1Q A;  1FQV B;  3HVE A;  3DRX A;  2PPI A;  3ZRF B;  2E32 B;  4BKT B;  5BXD A;  3ZTD B;  2I2R A;  2Q81 A;  3M5B A;  5H7H A;  3C6O A;  5HYW B;  4AP2 A;  1R2B A;  4W9I B;  3LNM B;  1T1D A;  1P22 B;  2OVQ A;  5EUP A;  4ZGC A;  5H7G A;  4UYI A;  2C9W C;  3M52 A;  5IBK A;  4W9C B;  4EOZ A;  5JH5 B;  5HZG C;  1NN7 A;  5BXB A;  1BUO A;  2E31 B;  3DRZ A;  3ZRC B;  3WSO B;  4B95 B;  1EOE A;  4W9J B;  2IHC A;  4ZOU A;  2P1M A;  5BO4 C;  3LBZ A;  4U2M A;  4BKS B;  4CXJ A;  1LDK D;  4N9F 5;  2P1P A;  4W9E B;  4APF A;  4CXT A;  1R29 A;  4U77 A;  5A15 A;  4CP3 A;  2NZ0 B;  1VCB B;  1HV2 A;  3V7D A;  1S1G A;  1CS3 A;  2P1N A;  4YY8 A;  3KVT A;  2AST A;  3E4U A;  3LUT B;  4W9F B;  3ZKJ B;  4JTC B;  5LLI B;  3L2O A;  2ASS A;  3C6P A;  2IF5 A;  4U2N A;  4W9L B;  3OGK A;  2MA9 C;  1A68 A;  5BXH A;  4W9K B;  3DRY A;  1FS1 B;  3OHU A;  4AWJ B;  1LQB B;  1QDW A;  1DSX A;  4HXI A;  3HU6 A;  3DCG B;  3M4T A;  4J8Z A;  2OVR A;  3C6N A;  2FNJ C;  5A6R A;  1NEX A;  1FS2 B;  3FKC A;  5DAF A;  4B9K E;  2P1O A;  4JGH C;  4JTA B;  4CXI A;  4AJY C;  2VKP A;  3MKS A;  2VPK A;  3I3N A;  3B84 A;  4I6J C;  5DAD A;  2NN2 A;  4W9H B;  2JZ3 C;  2Z8H A;  3OGM A;  4B9K B;  2A79 B;  4CRH A;  3BIM A;  3ZTC B;  4WQO C;  4W9G B;  1EOF A;  2IZV C;  3GA1 A;  5FTA A;  4W9H H;  2OVP A;  3HVE B; 
#chains in the Genus database with same CATH homology
 2R9R B;  4W9D B;  3ZNG B;  1R28 A;  2YY9 A;  3OGL A;  4UIJ A;  3OHV A;  1EXB E;  3HTM A;  4JTD B;  3ZUN B;  3M8V A;  3HQI A;  1LM8 C;  1QDV A;  1EOD A;  4BGC A;  2P1Q A;  1FQV B;  3HVE A;  3DRX A;  2PPI A;  3ZRF B;  2E32 B;  4BKT B;  5BXD A;  3ZTD B;  2I2R A;  2Q81 A;  3M5B A;  5H7H A;  3C6O A;  5HYW B;  4AP2 A;  1R2B A;  4W9I B;  3LNM B;  1T1D A;  1P22 B;  2OVQ A;  5EUP A;  4ZGC A;  5H7G A;  4UYI A;  2C9W C;  3M52 A;  5IBK A;  4W9C B;  4EOZ A;  5JH5 B;  5HZG C;  1NN7 A;  5BXB A;  1BUO A;  2E31 B;  3DRZ A;  3ZRC B;  3WSO B;  4B95 B;  1EOE A;  4W9J B;  2IHC A;  4ZOU A;  2P1M A;  5BO4 C;  3LBZ A;  4U2M A;  4BKS B;  4CXJ A;  1LDK D;  4N9F 5;  2P1P A;  4W9E B;  4APF A;  4CXT A;  1R29 A;  4U77 A;  5A15 A;  4CP3 A;  2NZ0 B;  1VCB B;  1HV2 A;  3V7D A;  1S1G A;  1CS3 A;  2P1N A;  4YY8 A;  3KVT A;  2AST A;  3E4U A;  3LUT B;  4W9F B;  3ZKJ B;  4JTC B;  5LLI B;  3L2O A;  2ASS A;  3C6P A;  2IF5 A;  4U2N A;  4W9L B;  3OGK A;  2MA9 C;  1A68 A;  5BXH A;  4W9K B;  3DRY A;  1FS1 B;  3OHU A;  4AWJ B;  1LQB B;  1QDW A;  1DSX A;  4HXI A;  3HU6 A;  3DCG B;  3M4T A;  4J8Z A;  2OVR A;  3C6N A;  2FNJ C;  5A6R A;  1NEX A;  1FS2 B;  3FKC A;  5DAF A;  4B9K E;  2P1O A;  4JGH C;  4JTA B;  4CXI A;  4AJY C;  2VKP A;  3MKS A;  2VPK A;  3I3N A;  3B84 A;  4I6J C;  5DAD A;  2NN2 A;  4W9H B;  2JZ3 C;  2Z8H A;  3OGM A;  4B9K B;  2A79 B;  4CRH A;  3BIM A;  3ZTC B;  4WQO C;  4W9G B;  1EOF A;  2IZV C;  3GA1 A;  5FTA A;  4W9H H;  2OVP A;  3HVE B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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