1VCEA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 73
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1vceA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1vceA01
2DXWA 2EJKA 2CBFA 2PCIA 2PB6A 2DSHA 2DV3A 2ZVCA 2DV5A 2EL2A 2DV4A 2E07A 3HH1A 2OWKA 3ND1A 2DSGA 1VHVA 1PJTA 3NDCA 2ED5A 3KWPA 1PJQA 2OWVA 2HUQA 2NPNA 2PCHA 2EKAA 2EGBA 2OWFA 3FFYA 2ED3A 1WNGA 1VCEA 2YBQA 2ELDA 2EL1A 2HR8A 2OWUA 2EHLA 2BB3A 2EL0A 4E16A 2PB4A 2EGSA 2EK7A 3NUTA 2E0NA 2EH4A 2P6LA 2E17A 3I4TA 2P9DA 2HUVA 2OWGA 2EH2A 2E8QA 2HUTA 2P6KA 2E8HA 1VE2A 2EMRA 2EGLA 1WDEA 2PCMA 2EJJA 2E8RA 1S4DA 2P5FA 1PJSA 2E7RA 2PCKA 2EN5A 2HUXA 2P6DA 2DSIA 2PCAA 2DXXA 2E08A 2DXVA 2EL3A 2E8SA 3FQ6A 1CBFA 2ENIA 2P2XA 2EMUA 2PCGA 2E4RA 2EK3A 2EK4A 2E4NA 2YBOA 2PB5A 2EHCA 2DEKA 2EEQA 1VA0A 2EJZA 2EK2A 3NEIA 1WYZA 2E15A 2E0KA 2P5CA 2E16A 2ELEA 2EH5A 5HW4A 2QBUA 2Z6RA 2DV7A 2ZVBA 1V9AA 2P6IA
chains in the Genus database with same CATH superfamily
2DXWA 2EJKA 2CBFA 2PCIA 2PB6A 4H4EA 2DSHA 2DV3A 3TIXB 2ZVCA 2DV5A 4EB3A 3T0GA 2EL2A 2DV4A 2E07A 3HH1A 3UV6A 2OWKA 3ND1A 2DSGA 3F7TA 1VHVA 3UTDA 1PJTA 3NDCA 2ED5A 3KWPA 3KEMA 1PJQA 2OWVA 2HUQA 3UV3A 2NPNA 3URKA 2PCHA 2EKAA 3ZGNA 2EGBA 2OWFA 3FFYA 2ED3A 1WNGA 1VCEA 2YBQA 2ELDA 2EL1A 3T0FA 3UV7A 2HR8A 2OWUA 2EHLA 3UWMA 2BB3A 2EL0A 4E16A 2PB4A 2EGSA 2EK7A 3NUTA 2E0NA 2EH4A 2P6LA 2E17A 3I4TA 2P9DA 2HUVA 4MV0A 2OWGA 2EH2A 2E8QA 2HUTA 2P6KA 4H4DA 3KE9A 2E8HA 3LMMA 3KEFA 1VE2A 3SZOA 2EMRA 2EGLA 1WDEA 2PCMA 4N7BA 2EJJA 3UTCA 2E8RA 1S4DA 2P5FA 4MUYA 3DNFA 1PJSA 2E7RA 2PCKA 2EN5A 3SZUA 2HUXA 2P6DA 2DSIA 2PCAA 2DXXA 2E08A 4MV5A 2DXVA 2EL3A 2KYYA 2E8SA 3FQ6A 1CBFA 2ENIA 2P2XA 2EMUA 2PCGA 2E4RA 3SZLA 2EK3A 2EK4A 2E4NA 2YBOA 4MUXA 2PB5A 3ZGLA 2EHCA 2DEKA 2EEQA 1VA0A 2EJZA 2EK2A 3NEIA 1WYZA 2E15A 2E0KA 2P5CA 3KELA 2E16A 2ELEA 3KE8A 2EH5A 5HW4A 2QBUA 4H4CA 2Z6RA 2DV7A 2ZVBA 1V9AA 2P6IA
chains in the Genus database with same CATH topology
2DXWA 2EJKA 2CBFA 2PCIA 2PB6A 4H4EA 2DSHA 2DV3A 3TIXB 2ZVCA 2DV5A 4EB3A 3T0GA 2EL2A 2DV4A 2E07A 3HH1A 3UV6A 2OWKA 3ND1A 2DSGA 3F7TA 1VHVA 3UTDA 1PJTA 3NDCA 2ED5A 3KWPA 3KEMA 1PJQA 2OWVA 2HUQA 3UV3A 2NPNA 3URKA 2PCHA 2EKAA 3ZGNA 2EGBA 2OWFA 3FFYA 2ED3A 1WNGA 1VCEA 2YBQA 2ELDA 2EL1A 3T0FA 3UV7A 2HR8A 2OWUA 2EHLA 3UWMA 2BB3A 2EL0A 4E16A 2PB4A 2EGSA 2EK7A 3NUTA 2E0NA 2EH4A 2P6LA 2E17A 3I4TA 2P9DA 2HUVA 4MV0A 2OWGA 2EH2A 2E8QA 2HUTA 2P6KA 4H4DA 3KE9A 2E8HA 3LMMA 3KEFA 1VE2A 3SZOA 2EMRA 2EGLA 1WDEA 2PCMA 4N7BA 2EJJA 3UTCA 2E8RA 1S4DA 2P5FA 4MUYA 3DNFA 1PJSA 2E7RA 2PCKA 2EN5A 3SZUA 2HUXA 2P6DA 2DSIA 2PCAA 2DXXA 2E08A 4MV5A 2DXVA 2EL3A 2KYYA 2E8SA 3FQ6A 1CBFA 2ENIA 2P2XA 2EMUA 2PCGA 2E4RA 3SZLA 2EK3A 2EK4A 2E4NA 2YBOA 4MUXA 2PB5A 3ZGLA 2EHCA 2DEKA 2EEQA 1VA0A 2EJZA 2EK2A 3NEIA 1WYZA 2E15A 2E0KA 2P5CA 3KELA 2E16A 2ELEA 3KE8A 2EH5A 5HW4A 2QBUA 4H4CA 2Z6RA 2DV7A 2ZVBA 1V9AA 2P6IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXW A;  2EJK A;  2CBF A;  2PCI A;  2PB6 A;  2DSH A;  2DV3 A;  2ZVC A;  2DV5 A;  2EL2 A;  2DV4 A;  2E07 A;  3HH1 A;  2OWK A;  3ND1 A;  2DSG A;  1VHV A;  1PJT A;  3NDC A;  2ED5 A;  3KWP A;  1PJQ A;  2OWV A;  2HUQ A;  2NPN A;  2PCH A;  2EKA A;  2EGB A;  2OWF A;  3FFY A;  2ED3 A;  1WNG A;  1VCE A;  2YBQ A;  2ELD A;  2EL1 A;  2HR8 A;  2OWU A;  2EHL A;  2BB3 A;  2EL0 A;  4E16 A;  2PB4 A;  2EGS A;  2EK7 A;  3NUT A;  2E0N A;  2EH4 A;  2P6L A;  2E17 A;  3I4T A;  2P9D A;  2HUV A;  2OWG A;  2EH2 A;  2E8Q A;  2HUT A;  2P6K A;  2E8H A;  1VE2 A;  2EMR A;  2EGL A;  1WDE A;  2PCM A;  2EJJ A;  2E8R A;  1S4D A;  2P5F A;  1PJS A;  2E7R A;  2PCK A;  2EN5 A;  2HUX A;  2P6D A;  2DSI A;  2PCA A;  2DXX A;  2E08 A;  2DXV A;  2EL3 A;  2E8S A;  3FQ6 A;  1CBF A;  2ENI A;  2P2X A;  2EMU A;  2PCG A;  2E4R A;  2EK3 A;  2EK4 A;  2E4N A;  2YBO A;  2PB5 A;  2EHC A;  2DEK A;  2EEQ A;  1VA0 A;  2EJZ A;  2EK2 A;  3NEI A;  1WYZ A;  2E15 A;  2E0K A;  2P5C A;  2E16 A;  2ELE A;  2EH5 A;  5HW4 A;  2QBU A;  2Z6R A;  2DV7 A;  2ZVB A;  1V9A A;  2P6I A; 
#chains in the Genus database with same CATH topology
 2DXW A;  2EJK A;  2CBF A;  2PCI A;  2PB6 A;  4H4E A;  2DSH A;  2DV3 A;  3TIX B;  2ZVC A;  2DV5 A;  4EB3 A;  3T0G A;  2EL2 A;  2DV4 A;  2E07 A;  3HH1 A;  3UV6 A;  2OWK A;  3ND1 A;  2DSG A;  3F7T A;  1VHV A;  3UTD A;  1PJT A;  3NDC A;  2ED5 A;  3KWP A;  3KEM A;  1PJQ A;  2OWV A;  2HUQ A;  3UV3 A;  2NPN A;  3URK A;  2PCH A;  2EKA A;  3ZGN A;  2EGB A;  2OWF A;  3FFY A;  2ED3 A;  1WNG A;  1VCE A;  2YBQ A;  2ELD A;  2EL1 A;  3T0F A;  3UV7 A;  2HR8 A;  2OWU A;  2EHL A;  3UWM A;  2BB3 A;  2EL0 A;  4E16 A;  2PB4 A;  2EGS A;  2EK7 A;  3NUT A;  2E0N A;  2EH4 A;  2P6L A;  2E17 A;  3I4T A;  2P9D A;  2HUV A;  4MV0 A;  2OWG A;  2EH2 A;  2E8Q A;  2HUT A;  2P6K A;  4H4D A;  3KE9 A;  2E8H A;  3LMM A;  3KEF A;  1VE2 A;  3SZO A;  2EMR A;  2EGL A;  1WDE A;  2PCM A;  4N7B A;  2EJJ A;  3UTC A;  2E8R A;  1S4D A;  2P5F A;  4MUY A;  3DNF A;  1PJS A;  2E7R A;  2PCK A;  2EN5 A;  3SZU A;  2HUX A;  2P6D A;  2DSI A;  2PCA A;  2DXX A;  2E08 A;  4MV5 A;  2DXV A;  2EL3 A;  2KYY A;  2E8S A;  3FQ6 A;  1CBF A;  2ENI A;  2P2X A;  2EMU A;  2PCG A;  2E4R A;  3SZL A;  2EK3 A;  2EK4 A;  2E4N A;  2YBO A;  4MUX A;  2PB5 A;  3ZGL A;  2EHC A;  2DEK A;  2EEQ A;  1VA0 A;  2EJZ A;  2EK2 A;  3NEI A;  1WYZ A;  2E15 A;  2E0K A;  2P5C A;  3KEL A;  2E16 A;  2ELE A;  3KE8 A;  2EH5 A;  5HW4 A;  2QBU A;  4H4C A;  2Z6R A;  2DV7 A;  2ZVB A;  1V9A A;  2P6I A; 
#chains in the Genus database with same CATH homology
 2DXW A;  2EJK A;  2CBF A;  2PCI A;  2PB6 A;  4H4E A;  2DSH A;  2DV3 A;  3TIX B;  2ZVC A;  2DV5 A;  4EB3 A;  3T0G A;  2EL2 A;  2DV4 A;  2E07 A;  3HH1 A;  3UV6 A;  2OWK A;  3ND1 A;  2DSG A;  3F7T A;  1VHV A;  3UTD A;  1PJT A;  3NDC A;  2ED5 A;  3KWP A;  3KEM A;  1PJQ A;  2OWV A;  2HUQ A;  3UV3 A;  2NPN A;  3URK A;  2PCH A;  2EKA A;  3ZGN A;  2EGB A;  2OWF A;  3FFY A;  2ED3 A;  1WNG A;  1VCE A;  2YBQ A;  2ELD A;  2EL1 A;  3T0F A;  3UV7 A;  2HR8 A;  2OWU A;  2EHL A;  3UWM A;  2BB3 A;  2EL0 A;  4E16 A;  2PB4 A;  2EGS A;  2EK7 A;  3NUT A;  2E0N A;  2EH4 A;  2P6L A;  2E17 A;  3I4T A;  2P9D A;  2HUV A;  4MV0 A;  2OWG A;  2EH2 A;  2E8Q A;  2HUT A;  2P6K A;  4H4D A;  3KE9 A;  2E8H A;  3LMM A;  3KEF A;  1VE2 A;  3SZO A;  2EMR A;  2EGL A;  1WDE A;  2PCM A;  4N7B A;  2EJJ A;  3UTC A;  2E8R A;  1S4D A;  2P5F A;  4MUY A;  3DNF A;  1PJS A;  2E7R A;  2PCK A;  2EN5 A;  3SZU A;  2HUX A;  2P6D A;  2DSI A;  2PCA A;  2DXX A;  2E08 A;  4MV5 A;  2DXV A;  2EL3 A;  2KYY A;  2E8S A;  3FQ6 A;  1CBF A;  2ENI A;  2P2X A;  2EMU A;  2PCG A;  2E4R A;  3SZL A;  2EK3 A;  2EK4 A;  2E4N A;  2YBO A;  4MUX A;  2PB5 A;  3ZGL A;  2EHC A;  2DEK A;  2EEQ A;  1VA0 A;  2EJZ A;  2EK2 A;  3NEI A;  1WYZ A;  2E15 A;  2E0K A;  2P5C A;  3KEL A;  2E16 A;  2ELE A;  3KE8 A;  2EH5 A;  5HW4 A;  2QBU A;  4H4C A;  2Z6R A;  2DV7 A;  2ZVB A;  1V9A A;  2P6I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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