1VCEA

Crystal structure of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 73
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1vceA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1vceA01
2ELDA 2EMRA 2P5CA 5HW4A 2E08A 2E8QA 3NEIA 3FQ6A 2EL3A 2P2XA 2PB5A 2PCHA 2EH5A 2YBQA 2PCAA 1VA0A 1PJQA 2EJJA 2DXVA 2EK7A 2HUQA 2DXXA 2PB4A 2ELEA 2EH2A 2DEKA 2ZVBA 2P6IA 2E4NA 1PJSA 2EEQA 2PCKA 2EL1A 2P5FA 2QBUA 2E4RA 2E16A 2DV4A 2EGBA 4E16A 1VE2A 2ED5A 2E7RA 3ND1A 2EK4A 2DV7A 2EGLA 1WDEA 3FFYA 2PCIA 2EL2A 3NUTA 3HH1A 2HUVA 2P6LA 2EK3A 2PCGA 2EH4A 1CBFA 2E8RA 2HUTA 1WYZA 2EHCA 3KWPA 2CBFA 2E8HA 2BB3A 2PCMA 2HR8A 3I4TA 2ENIA 2E8SA 1PJTA 2OWGA 3NDCA 2OWKA 2P9DA 2DXWA 2DSGA 2ED3A 2P6DA 2EJZA 2YBOA 2ZVCA 1WNGA 2EMUA 2DSIA 2OWUA 2EK2A 1S4DA 1VCEA 2DV5A 2PB6A 2OWVA 2EGSA 2Z6RA 2E0NA 2EHLA 2EJKA 1V9AA 2DV3A 2NPNA 2E0KA 2DSHA 2EL0A 2E07A 2E17A 2EKAA 2E15A 2P6KA 1VHVA 2OWFA 2HUXA 2EN5A
chains in the Genus database with same CATH superfamily
3UV7A 2ELDA 2EMRA 2P5CA 5HW4A 2E08A 4H4DA 2E8QA 3UV3A 3NEIA 3FQ6A 2EL3A 2P2XA 2PB5A 4MUYA 2PCHA 2EH5A 2YBQA 2PCAA 1VA0A 1PJQA 2EJJA 3F7TA 2DXVA 3UV6A 2EK7A 2HUQA 2DXXA 2PB4A 3T0GA 2ELEA 2EH2A 4EB3A 2DEKA 2ZVBA 2P6IA 3KEFA 2E4NA 1PJSA 3TIXB 2EEQA 2PCKA 3KEMA 2EL1A 2P5FA 3URKA 2QBUA 2E4RA 2E16A 2DV4A 2EGBA 4E16A 1VE2A 2ED5A 3KE9A 2E7RA 3ND1A 2EK4A 3T0FA 4N7BA 2DV7A 3UTCA 2EGLA 1WDEA 3FFYA 3SZLA 2PCIA 2EL2A 3NUTA 3UWMA 3HH1A 3SZUA 2HUVA 3ZGLA 2P6LA 2EK3A 2PCGA 2EH4A 1CBFA 2E8RA 2HUTA 4MUXA 1WYZA 2EHCA 3SZOA 2KYYA 3DNFA 3KWPA 2CBFA 2E8HA 2BB3A 2PCMA 3KELA 2HR8A 3I4TA 2ENIA 3ZGNA 2E8SA 1PJTA 2OWGA 3NDCA 3KE8A 2OWKA 2P9DA 3UTDA 2DXWA 2DSGA 2ED3A 2P6DA 4MV0A 2EJZA 3LMMA 2YBOA 2ZVCA 4H4EA 1WNGA 2EMUA 2DSIA 2OWUA 2EK2A 1S4DA 1VCEA 2DV5A 2PB6A 2OWVA 4H4CA 2EGSA 2Z6RA 2E0NA 2EHLA 2EJKA 1V9AA 2DV3A 2NPNA 2E0KA 2DSHA 2EL0A 2E07A 2E17A 2EKAA 4MV5A 2E15A 2P6KA 1VHVA 2OWFA 2HUXA 2EN5A
chains in the Genus database with same CATH topology
3UV7A 2ELDA 2EMRA 2P5CA 5HW4A 2E08A 4H4DA 2E8QA 3UV3A 3NEIA 3FQ6A 2EL3A 2P2XA 2PB5A 4MUYA 2PCHA 2EH5A 2YBQA 2PCAA 1VA0A 1PJQA 2EJJA 3F7TA 2DXVA 3UV6A 2EK7A 2HUQA 2DXXA 2PB4A 3T0GA 2ELEA 2EH2A 4EB3A 2DEKA 2ZVBA 2P6IA 3KEFA 2E4NA 1PJSA 3TIXB 2EEQA 2PCKA 3KEMA 2EL1A 2P5FA 3URKA 2QBUA 2E4RA 2E16A 2DV4A 2EGBA 4E16A 1VE2A 2ED5A 3KE9A 2E7RA 3ND1A 2EK4A 3T0FA 4N7BA 2DV7A 3UTCA 2EGLA 1WDEA 3FFYA 3SZLA 2PCIA 2EL2A 3NUTA 3UWMA 3HH1A 3SZUA 2HUVA 3ZGLA 2P6LA 2EK3A 2PCGA 2EH4A 1CBFA 2E8RA 2HUTA 4MUXA 1WYZA 2EHCA 3SZOA 2KYYA 3DNFA 3KWPA 2CBFA 2E8HA 2BB3A 2PCMA 3KELA 2HR8A 3I4TA 2ENIA 3ZGNA 2E8SA 1PJTA 2OWGA 3NDCA 3KE8A 2OWKA 2P9DA 3UTDA 2DXWA 2DSGA 2ED3A 2P6DA 4MV0A 2EJZA 3LMMA 2YBOA 2ZVCA 4H4EA 1WNGA 2EMUA 2DSIA 2OWUA 2EK2A 1S4DA 1VCEA 2DV5A 2PB6A 2OWVA 4H4CA 2EGSA 2Z6RA 2E0NA 2EHLA 2EJKA 1V9AA 2DV3A 2NPNA 2E0KA 2DSHA 2EL0A 2E07A 2E17A 2EKAA 4MV5A 2E15A 2P6KA 1VHVA 2OWFA 2HUXA 2EN5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ELD A;  2EMR A;  2P5C A;  5HW4 A;  2E08 A;  2E8Q A;  3NEI A;  3FQ6 A;  2EL3 A;  2P2X A;  2PB5 A;  2PCH A;  2EH5 A;  2YBQ A;  2PCA A;  1VA0 A;  1PJQ A;  2EJJ A;  2DXV A;  2EK7 A;  2HUQ A;  2DXX A;  2PB4 A;  2ELE A;  2EH2 A;  2DEK A;  2ZVB A;  2P6I A;  2E4N A;  1PJS A;  2EEQ A;  2PCK A;  2EL1 A;  2P5F A;  2QBU A;  2E4R A;  2E16 A;  2DV4 A;  2EGB A;  4E16 A;  1VE2 A;  2ED5 A;  2E7R A;  3ND1 A;  2EK4 A;  2DV7 A;  2EGL A;  1WDE A;  3FFY A;  2PCI A;  2EL2 A;  3NUT A;  3HH1 A;  2HUV A;  2P6L A;  2EK3 A;  2PCG A;  2EH4 A;  1CBF A;  2E8R A;  2HUT A;  1WYZ A;  2EHC A;  3KWP A;  2CBF A;  2E8H A;  2BB3 A;  2PCM A;  2HR8 A;  3I4T A;  2ENI A;  2E8S A;  1PJT A;  2OWG A;  3NDC A;  2OWK A;  2P9D A;  2DXW A;  2DSG A;  2ED3 A;  2P6D A;  2EJZ A;  2YBO A;  2ZVC A;  1WNG A;  2EMU A;  2DSI A;  2OWU A;  2EK2 A;  1S4D A;  1VCE A;  2DV5 A;  2PB6 A;  2OWV A;  2EGS A;  2Z6R A;  2E0N A;  2EHL A;  2EJK A;  1V9A A;  2DV3 A;  2NPN A;  2E0K A;  2DSH A;  2EL0 A;  2E07 A;  2E17 A;  2EKA A;  2E15 A;  2P6K A;  1VHV A;  2OWF A;  2HUX A;  2EN5 A; 
#chains in the Genus database with same CATH topology
 3UV7 A;  2ELD A;  2EMR A;  2P5C A;  5HW4 A;  2E08 A;  4H4D A;  2E8Q A;  3UV3 A;  3NEI A;  3FQ6 A;  2EL3 A;  2P2X A;  2PB5 A;  4MUY A;  2PCH A;  2EH5 A;  2YBQ A;  2PCA A;  1VA0 A;  1PJQ A;  2EJJ A;  3F7T A;  2DXV A;  3UV6 A;  2EK7 A;  2HUQ A;  2DXX A;  2PB4 A;  3T0G A;  2ELE A;  2EH2 A;  4EB3 A;  2DEK A;  2ZVB A;  2P6I A;  3KEF A;  2E4N A;  1PJS A;  3TIX B;  2EEQ A;  2PCK A;  3KEM A;  2EL1 A;  2P5F A;  3URK A;  2QBU A;  2E4R A;  2E16 A;  2DV4 A;  2EGB A;  4E16 A;  1VE2 A;  2ED5 A;  3KE9 A;  2E7R A;  3ND1 A;  2EK4 A;  3T0F A;  4N7B A;  2DV7 A;  3UTC A;  2EGL A;  1WDE A;  3FFY A;  3SZL A;  2PCI A;  2EL2 A;  3NUT A;  3UWM A;  3HH1 A;  3SZU A;  2HUV A;  3ZGL A;  2P6L A;  2EK3 A;  2PCG A;  2EH4 A;  1CBF A;  2E8R A;  2HUT A;  4MUX A;  1WYZ A;  2EHC A;  3SZO A;  2KYY A;  3DNF A;  3KWP A;  2CBF A;  2E8H A;  2BB3 A;  2PCM A;  3KEL A;  2HR8 A;  3I4T A;  2ENI A;  3ZGN A;  2E8S A;  1PJT A;  2OWG A;  3NDC A;  3KE8 A;  2OWK A;  2P9D A;  3UTD A;  2DXW A;  2DSG A;  2ED3 A;  2P6D A;  4MV0 A;  2EJZ A;  3LMM A;  2YBO A;  2ZVC A;  4H4E A;  1WNG A;  2EMU A;  2DSI A;  2OWU A;  2EK2 A;  1S4D A;  1VCE A;  2DV5 A;  2PB6 A;  2OWV A;  4H4C A;  2EGS A;  2Z6R A;  2E0N A;  2EHL A;  2EJK A;  1V9A A;  2DV3 A;  2NPN A;  2E0K A;  2DSH A;  2EL0 A;  2E07 A;  2E17 A;  2EKA A;  4MV5 A;  2E15 A;  2P6K A;  1VHV A;  2OWF A;  2HUX A;  2EN5 A; 
#chains in the Genus database with same CATH homology
 3UV7 A;  2ELD A;  2EMR A;  2P5C A;  5HW4 A;  2E08 A;  4H4D A;  2E8Q A;  3UV3 A;  3NEI A;  3FQ6 A;  2EL3 A;  2P2X A;  2PB5 A;  4MUY A;  2PCH A;  2EH5 A;  2YBQ A;  2PCA A;  1VA0 A;  1PJQ A;  2EJJ A;  3F7T A;  2DXV A;  3UV6 A;  2EK7 A;  2HUQ A;  2DXX A;  2PB4 A;  3T0G A;  2ELE A;  2EH2 A;  4EB3 A;  2DEK A;  2ZVB A;  2P6I A;  3KEF A;  2E4N A;  1PJS A;  3TIX B;  2EEQ A;  2PCK A;  3KEM A;  2EL1 A;  2P5F A;  3URK A;  2QBU A;  2E4R A;  2E16 A;  2DV4 A;  2EGB A;  4E16 A;  1VE2 A;  2ED5 A;  3KE9 A;  2E7R A;  3ND1 A;  2EK4 A;  3T0F A;  4N7B A;  2DV7 A;  3UTC A;  2EGL A;  1WDE A;  3FFY A;  3SZL A;  2PCI A;  2EL2 A;  3NUT A;  3UWM A;  3HH1 A;  3SZU A;  2HUV A;  3ZGL A;  2P6L A;  2EK3 A;  2PCG A;  2EH4 A;  1CBF A;  2E8R A;  2HUT A;  4MUX A;  1WYZ A;  2EHC A;  3SZO A;  2KYY A;  3DNF A;  3KWP A;  2CBF A;  2E8H A;  2BB3 A;  2PCM A;  3KEL A;  2HR8 A;  3I4T A;  2ENI A;  3ZGN A;  2E8S A;  1PJT A;  2OWG A;  3NDC A;  3KE8 A;  2OWK A;  2P9D A;  3UTD A;  2DXW A;  2DSG A;  2ED3 A;  2P6D A;  4MV0 A;  2EJZ A;  3LMM A;  2YBO A;  2ZVC A;  4H4E A;  1WNG A;  2EMU A;  2DSI A;  2OWU A;  2EK2 A;  1S4D A;  1VCE A;  2DV5 A;  2PB6 A;  2OWV A;  4H4C A;  2EGS A;  2Z6R A;  2E0N A;  2EHL A;  2EJK A;  1V9A A;  2DV3 A;  2NPN A;  2E0K A;  2DSH A;  2EL0 A;  2E07 A;  2E17 A;  2EKA A;  4MV5 A;  2E15 A;  2P6K A;  1VHV A;  2OWF A;  2HUX A;  2EN5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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