1VCKA

Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of pseudomonas resinovorans strain ca10
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ferredoxin component of carbazole
publication title Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system
pubmed doi rcsb
source organism Pseudomonas resinovorans
molecule tags Oxidoreductase
total genus 21
structure length 104
sequence length 104
ec nomenclature ec 1.14.12.-:
pdb deposition date 2004-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1vckA00
3GTEA 2E4PA 4QURA 4AIVA 4NBHD 1SQBE 4NBAD 4HM0A 4PD4E 4QDCA 1RFSA 2NVGA 1O7GA 2A06E 2DE7D 4HM8A 2E75D 3GKEA 2GBXA 5CXMA 1SQVE 3GZYA 3L73E 4H0LD 2BMRA 3L71E 4NB8D 1NYKA 2HMNA 3GL0A 2DE5D 4HJLA 2HMOA 2CKFA 3VMHD 1G8KB 3H1LE 5HL4A 2XRXA 1O7NA 2YIUC 1SJGA 3FOUA 4H13D 1FQTA 2QJKC 3GOBA 1WQLA 1L0NE 3H1JE 5KKZC 2BCCE 2JZAA 3AZCA 4QUQA 4HM1A 3VMGD 3GCEA 2ZYLA 4NBCD 4HM2A 2D2CD 1PP9E 5AEUA 2YFJA 1NTME 1ULJA 2BMQA 1BE3E 1O7MA 2XSOA 4AAYB 1EZVE 4OGQD 2FYUE 3VCAA 1VCKA 2HMMA 4HKVA 1NTKE 4HM7A 4NBBD 3VMID 1Q90C 4P1BH 1UUWA 1VF5D 3EQQA 3CX5E 3GZXA 1NU1E 2B24A 4HM3A 1O7WA 4HM6A 4NBGD 3GTSA 4QDFA 5AEWA 1SQQE 3H1IE 3DQYA 3L72E 2I7FA 2XR8A 2B1XA 3H1KE 2IBZE 1O7HA 3L70E 2GBWA 1L0LE 3L75E 2YVJB 1EG9A 4PV1D 2JO6A 2HMLA 1ULIA 4H44D 1SQPE 2HMJA 3N0QA 1G8JB 1PPJE 3VCPA 2HMKA 1O7PA 4NBED 1P84E 3TGUE 2XSHA 3D89A 2BMOA 2NVEA 3EN1A 3GB4A 2DE6D 5KLVE 3CXHE 5BOKA 1KYOE 1JM1A 3C0DA 2E4QA 5KLIC 2NUKA 2YFLA 2Q3WA 1UUVA 1ZRTE 4HM4A 4NBFD 4NBDD 2NUMA 4QDFB 4QCKA 1SQXE 1NTZE 2NVFA 2QJYC 4QDDA 2ZT9D 1VM9A 4QUPA 4NB9D 1BCCE 2QPZA 3GL2A 2E74D 2E76D 3H1HE 1NDOA 2YFIA 3BCCE 4U3FE 2NWFA 3L74E 4HM5A 4P1CH 3CWBE 1KB9E 2QJPC 2FYNC 4EMJB 1RIEA
chains in the Genus database with same CATH superfamily
3GTEA 2E4PA 4QURA 4AIVA 4NBHD 1SQBE 4NBAD 4HM0A 4PD4E 4QDCA 1RFSA 2NVGA 1O7GA 2A06E 2DE7D 4HM8A 2E75D 3GKEA 2GBXA 5CXMA 1SQVE 3GZYA 3L73E 4H0LD 2BMRA 3L71E 4NB8D 1NYKA 2HMNA 3GL0A 2DE5D 4HJLA 2HMOA 2CKFA 3VMHD 1G8KB 3H1LE 5HL4A 2XRXA 1O7NA 2YIUC 1SJGA 3FOUA 4H13D 1FQTA 2QJKC 3GOBA 1WQLA 1L0NE 3H1JE 5KKZC 2BCCE 2JZAA 3AZCA 4QUQA 4HM1A 3VMGD 3GCEA 2ZYLA 4NBCD 4HM2A 2D2CD 1PP9E 5AEUA 2YFJA 1NTME 1ULJA 2BMQA 1BE3E 1O7MA 2XSOA 4AAYB 1EZVE 4OGQD 2FYUE 3VCAA 1VCKA 2HMMA 4HKVA 1NTKE 4HM7A 4NBBD 3VMID 1Q90C 4P1BH 1UUWA 1VF5D 3EQQA 3CX5E 3GZXA 1NU1E 2B24A 4HM3A 1O7WA 4HM6A 4NBGD 3GTSA 4QDFA 5AEWA 1SQQE 3H1IE 3DQYA 3L72E 2I7FA 2XR8A 2B1XA 3H1KE 2IBZE 1O7HA 3L70E 2GBWA 1L0LE 3L75E 2YVJB 1EG9A 4PV1D 2JO6A 2HMLA 1ULIA 4H44D 1SQPE 2HMJA 3N0QA 1G8JB 1PPJE 3VCPA 2HMKA 1O7PA 4NBED 1P84E 3TGUE 2XSHA 3D89A 2BMOA 2NVEA 3EN1A 3GB4A 2DE6D 5KLVE 3CXHE 5BOKA 1KYOE 1JM1A 3C0DA 2E4QA 5KLIC 2NUKA 2YFLA 2Q3WA 1UUVA 1ZRTE 4HM4A 4NBFD 4NBDD 2NUMA 4QDFB 4QCKA 1SQXE 1NTZE 2NVFA 2QJYC 4QDDA 2ZT9D 1VM9A 4QUPA 4NB9D 1BCCE 2QPZA 3GL2A 2E74D 2E76D 3H1HE 1NDOA 2YFIA 3BCCE 4U3FE 2NWFA 3L74E 4HM5A 4P1CH 3CWBE 1KB9E 2QJPC 2FYNC 4EMJB 1RIEA
chains in the Genus database with same CATH topology
3GTEA 2E4PA 4QURA 4AIVA 4NBHD 1SQBE 4NBAD 4HM0A 4PD4E 4QDCA 1RFSA 2NVGA 1O7GA 2A06E 2DE7D 4HM8A 2E75D 3GKEA 2GBXA 5CXMA 1SQVE 3GZYA 3L73E 4H0LD 2BMRA 3L71E 4NB8D 1NYKA 2HMNA 3GL0A 2DE5D 4HJLA 2HMOA 2CKFA 3VMHD 1G8KB 3H1LE 5HL4A 2XRXA 1O7NA 2YIUC 1SJGA 3FOUA 4H13D 1FQTA 2QJKC 3GOBA 1WQLA 1L0NE 3H1JE 5KKZC 2BCCE 2JZAA 3AZCA 4QUQA 4HM1A 3VMGD 3GCEA 2ZYLA 4NBCD 4HM2A 2D2CD 1PP9E 5AEUA 2YFJA 1NTME 1ULJA 2BMQA 1BE3E 1O7MA 2XSOA 4AAYB 1EZVE 4OGQD 2FYUE 3VCAA 1VCKA 2HMMA 4HKVA 1NTKE 4HM7A 4NBBD 3VMID 1Q90C 4P1BH 1UUWA 1VF5D 3EQQA 3CX5E 3GZXA 1NU1E 2B24A 4HM3A 1O7WA 4HM6A 4NBGD 3GTSA 4QDFA 5AEWA 1SQQE 3H1IE 3DQYA 3L72E 2I7FA 2XR8A 2B1XA 3H1KE 2IBZE 1O7HA 3L70E 2GBWA 1L0LE 3L75E 2YVJB 1EG9A 4PV1D 2JO6A 2HMLA 1ULIA 4H44D 1SQPE 2HMJA 3N0QA 1G8JB 1PPJE 3VCPA 2HMKA 1O7PA 4NBED 1P84E 3TGUE 2XSHA 3D89A 2BMOA 2NVEA 3EN1A 3GB4A 2DE6D 5KLVE 3CXHE 5BOKA 1KYOE 1JM1A 3C0DA 2E4QA 5KLIC 2NUKA 2YFLA 2Q3WA 1UUVA 1ZRTE 4HM4A 4NBFD 4NBDD 2NUMA 4QDFB 4QCKA 1SQXE 1NTZE 2NVFA 2QJYC 4QDDA 2ZT9D 1VM9A 4QUPA 4NB9D 1BCCE 2QPZA 3GL2A 2E74D 2E76D 3H1HE 1NDOA 2YFIA 3BCCE 4U3FE 2NWFA 3L74E 4HM5A 4P1CH 3CWBE 1KB9E 2QJPC 2FYNC 4EMJB 1RIEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTE A;  2E4P A;  4QUR A;  4AIV A;  4NBH D;  1SQB E;  4NBA D;  4HM0 A;  4PD4 E;  4QDC A;  1RFS A;  2NVG A;  1O7G A;  2A06 E;  2DE7 D;  4HM8 A;  2E75 D;  3GKE A;  2GBX A;  5CXM A;  1SQV E;  3GZY A;  3L73 E;  4H0L D;  2BMR A;  3L71 E;  4NB8 D;  1NYK A;  2HMN A;  3GL0 A;  2DE5 D;  4HJL A;  2HMO A;  2CKF A;  3VMH D;  1G8K B;  3H1L E;  5HL4 A;  2XRX A;  1O7N A;  2YIU C;  1SJG A;  3FOU A;  4H13 D;  1FQT A;  2QJK C;  3GOB A;  1WQL A;  1L0N E;  3H1J E;  5KKZ C;  2BCC E;  2JZA A;  3AZC A;  4QUQ A;  4HM1 A;  3VMG D;  3GCE A;  2ZYL A;  4NBC D;  4HM2 A;  2D2C D;  1PP9 E;  5AEU A;  2YFJ A;  1NTM E;  1ULJ A;  2BMQ A;  1BE3 E;  1O7M A;  2XSO A;  4AAY B;  1EZV E;  4OGQ D;  2FYU E;  3VCA A;  1VCK A;  2HMM A;  4HKV A;  1NTK E;  4HM7 A;  4NBB D;  3VMI D;  1Q90 C;  4P1B H;  1UUW A;  1VF5 D;  3EQQ A;  3CX5 E;  3GZX A;  1NU1 E;  2B24 A;  4HM3 A;  1O7W A;  4HM6 A;  4NBG D;  3GTS A;  4QDF A;  5AEW A;  1SQQ E;  3H1I E;  3DQY A;  3L72 E;  2I7F A;  2XR8 A;  2B1X A;  3H1K E;  2IBZ E;  1O7H A;  3L70 E;  2GBW A;  1L0L E;  3L75 E;  2YVJ B;  1EG9 A;  4PV1 D;  2JO6 A;  2HML A;  1ULI A;  4H44 D;  1SQP E;  2HMJ A;  3N0Q A;  1G8J B;  1PPJ E;  3VCP A;  2HMK A;  1O7P A;  4NBE D;  1P84 E;  3TGU E;  2XSH A;  3D89 A;  2BMO A;  2NVE A;  3EN1 A;  3GB4 A;  2DE6 D;  5KLV E;  3CXH E;  5BOK A;  1KYO E;  1JM1 A;  3C0D A;  2E4Q A;  5KLI C;  2NUK A;  2YFL A;  2Q3W A;  1UUV A;  1ZRT E;  4HM4 A;  4NBF D;  4NBD D;  2NUM A;  4QDF B;  4QCK A;  1SQX E;  1NTZ E;  2NVF A;  2QJY C;  4QDD A;  2ZT9 D;  1VM9 A;  4QUP A;  4NB9 D;  1BCC E;  2QPZ A;  3GL2 A;  2E74 D;  2E76 D;  3H1H E;  1NDO A;  2YFI A;  3BCC E;  4U3F E;  2NWF A;  3L74 E;  4HM5 A;  4P1C H;  3CWB E;  1KB9 E;  2QJP C;  2FYN C;  4EMJ B;  1RIE A; 
#chains in the Genus database with same CATH topology
 3GTE A;  2E4P A;  4QUR A;  4AIV A;  4NBH D;  1SQB E;  4NBA D;  4HM0 A;  4PD4 E;  4QDC A;  1RFS A;  2NVG A;  1O7G A;  2A06 E;  2DE7 D;  4HM8 A;  2E75 D;  3GKE A;  2GBX A;  5CXM A;  1SQV E;  3GZY A;  3L73 E;  4H0L D;  2BMR A;  3L71 E;  4NB8 D;  1NYK A;  2HMN A;  3GL0 A;  2DE5 D;  4HJL A;  2HMO A;  2CKF A;  3VMH D;  1G8K B;  3H1L E;  5HL4 A;  2XRX A;  1O7N A;  2YIU C;  1SJG A;  3FOU A;  4H13 D;  1FQT A;  2QJK C;  3GOB A;  1WQL A;  1L0N E;  3H1J E;  5KKZ C;  2BCC E;  2JZA A;  3AZC A;  4QUQ A;  4HM1 A;  3VMG D;  3GCE A;  2ZYL A;  4NBC D;  4HM2 A;  2D2C D;  1PP9 E;  5AEU A;  2YFJ A;  1NTM E;  1ULJ A;  2BMQ A;  1BE3 E;  1O7M A;  2XSO A;  4AAY B;  1EZV E;  4OGQ D;  2FYU E;  3VCA A;  1VCK A;  2HMM A;  4HKV A;  1NTK E;  4HM7 A;  4NBB D;  3VMI D;  1Q90 C;  4P1B H;  1UUW A;  1VF5 D;  3EQQ A;  3CX5 E;  3GZX A;  1NU1 E;  2B24 A;  4HM3 A;  1O7W A;  4HM6 A;  4NBG D;  3GTS A;  4QDF A;  5AEW A;  1SQQ E;  3H1I E;  3DQY A;  3L72 E;  2I7F A;  2XR8 A;  2B1X A;  3H1K E;  2IBZ E;  1O7H A;  3L70 E;  2GBW A;  1L0L E;  3L75 E;  2YVJ B;  1EG9 A;  4PV1 D;  2JO6 A;  2HML A;  1ULI A;  4H44 D;  1SQP E;  2HMJ A;  3N0Q A;  1G8J B;  1PPJ E;  3VCP A;  2HMK A;  1O7P A;  4NBE D;  1P84 E;  3TGU E;  2XSH A;  3D89 A;  2BMO A;  2NVE A;  3EN1 A;  3GB4 A;  2DE6 D;  5KLV E;  3CXH E;  5BOK A;  1KYO E;  1JM1 A;  3C0D A;  2E4Q A;  5KLI C;  2NUK A;  2YFL A;  2Q3W A;  1UUV A;  1ZRT E;  4HM4 A;  4NBF D;  4NBD D;  2NUM A;  4QDF B;  4QCK A;  1SQX E;  1NTZ E;  2NVF A;  2QJY C;  4QDD A;  2ZT9 D;  1VM9 A;  4QUP A;  4NB9 D;  1BCC E;  2QPZ A;  3GL2 A;  2E74 D;  2E76 D;  3H1H E;  1NDO A;  2YFI A;  3BCC E;  4U3F E;  2NWF A;  3L74 E;  4HM5 A;  4P1C H;  3CWB E;  1KB9 E;  2QJP C;  2FYN C;  4EMJ B;  1RIE A; 
#chains in the Genus database with same CATH homology
 3GTE A;  2E4P A;  4QUR A;  4AIV A;  4NBH D;  1SQB E;  4NBA D;  4HM0 A;  4PD4 E;  4QDC A;  1RFS A;  2NVG A;  1O7G A;  2A06 E;  2DE7 D;  4HM8 A;  2E75 D;  3GKE A;  2GBX A;  5CXM A;  1SQV E;  3GZY A;  3L73 E;  4H0L D;  2BMR A;  3L71 E;  4NB8 D;  1NYK A;  2HMN A;  3GL0 A;  2DE5 D;  4HJL A;  2HMO A;  2CKF A;  3VMH D;  1G8K B;  3H1L E;  5HL4 A;  2XRX A;  1O7N A;  2YIU C;  1SJG A;  3FOU A;  4H13 D;  1FQT A;  2QJK C;  3GOB A;  1WQL A;  1L0N E;  3H1J E;  5KKZ C;  2BCC E;  2JZA A;  3AZC A;  4QUQ A;  4HM1 A;  3VMG D;  3GCE A;  2ZYL A;  4NBC D;  4HM2 A;  2D2C D;  1PP9 E;  5AEU A;  2YFJ A;  1NTM E;  1ULJ A;  2BMQ A;  1BE3 E;  1O7M A;  2XSO A;  4AAY B;  1EZV E;  4OGQ D;  2FYU E;  3VCA A;  1VCK A;  2HMM A;  4HKV A;  1NTK E;  4HM7 A;  4NBB D;  3VMI D;  1Q90 C;  4P1B H;  1UUW A;  1VF5 D;  3EQQ A;  3CX5 E;  3GZX A;  1NU1 E;  2B24 A;  4HM3 A;  1O7W A;  4HM6 A;  4NBG D;  3GTS A;  4QDF A;  5AEW A;  1SQQ E;  3H1I E;  3DQY A;  3L72 E;  2I7F A;  2XR8 A;  2B1X A;  3H1K E;  2IBZ E;  1O7H A;  3L70 E;  2GBW A;  1L0L E;  3L75 E;  2YVJ B;  1EG9 A;  4PV1 D;  2JO6 A;  2HML A;  1ULI A;  4H44 D;  1SQP E;  2HMJ A;  3N0Q A;  1G8J B;  1PPJ E;  3VCP A;  2HMK A;  1O7P A;  4NBE D;  1P84 E;  3TGU E;  2XSH A;  3D89 A;  2BMO A;  2NVE A;  3EN1 A;  3GB4 A;  2DE6 D;  5KLV E;  3CXH E;  5BOK A;  1KYO E;  1JM1 A;  3C0D A;  2E4Q A;  5KLI C;  2NUK A;  2YFL A;  2Q3W A;  1UUV A;  1ZRT E;  4HM4 A;  4NBF D;  4NBD D;  2NUM A;  4QDF B;  4QCK A;  1SQX E;  1NTZ E;  2NVF A;  2QJY C;  4QDD A;  2ZT9 D;  1VM9 A;  4QUP A;  4NB9 D;  1BCC E;  2QPZ A;  3GL2 A;  2E74 D;  2E76 D;  3H1H E;  1NDO A;  2YFI A;  3BCC E;  4U3F E;  2NWF A;  3L74 E;  4HM5 A;  4P1C H;  3CWB E;  1KB9 E;  2QJP C;  2FYN C;  4EMJ B;  1RIE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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