1VCKA

Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of pseudomonas resinovorans strain ca10
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ferredoxin component of carbazole
publication title Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system
pubmed doi rcsb
source organism Pseudomonas resinovorans
molecule tags Oxidoreductase
total genus 21
structure length 104
sequence length 104
ec nomenclature ec 1.14.12.-:
pdb deposition date 2004-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1vckA00
1ZRTE 4NBBD 2HMNA 4QCKA 3GCEA 4HM3A 4QUPA 3EN1A 1SQQE 2GBWA 2QPZA 3BCCE 1BCCE 5KKZC 4OGQD 1SQBE 4NBFD 2E4PA 2HMJA 3C0DA 1SQVE 4HM1A 1NDOA 2GBXA 3EQQA 4HKVA 3CXHE 2ZT9D 1O7MA 5KLVE 4NBHD 2E74D 4NBCD 3L74E 2E4QA 3GTEA 2HMLA 2ZYLA 1P84E 2NVEA 3L71E 2QJKC 2XSHA 2JZAA 3VMHD 3VMID 5AEUA 2XRXA 1NYKA 4NB8D 3AZCA 3FOUA 1UUVA 1VM9A 2JO6A 3GZXA 4QDDA 2I7FA 5CXMA 2QJYC 3N0QA 4H44D 3D89A 3H1HE 1ULJA 3GL0A 1O7PA 2HMOA 3GOBA 2E76D 5KLIC 3VCAA 2BMQA 5BOKA 1WQLA 1RFSA 3CWBE 3L72E 2HMKA 1SQXE 2YIUC 1NU1E 1SJGA 4HM6A 4P1CH 2D2CD 3L75E 1JM1A 2BMRA 2CKFA 2FYUE 4NBAD 3GKEA 2NUKA 1O7WA 4H0LD 3DQYA 2XSOA 1VCKA 1EZVE 4NBGD 1FQTA 4PV1D 1O7GA 1BE3E 2QJPC 4QUQA 3GB4A 5HL4A 4NBED 5AEWA 1PP9E 1PPJE 1RIEA 2B1XA 2DE5D 3VCPA 4QURA 1O7HA 2BMOA 2YFLA 4AIVA 2NWFA 2IBZE 2DE7D 3CX5E 3H1IE 4HM5A 2XR8A 4QDFA 2YFJA 1ULIA 4U3FE 3GTSA 4HM0A 2NVFA 2Q3WA 4QDFB 2HMMA 3GL2A 1O7NA 4NB9D 1L0LE 4HJLA 1G8KB 1KB9E 1KYOE 1VF5D 1NTZE 1G8JB 4HM4A 4P1BH 2NVGA 4H13D 2YVJB 1L0NE 4NBDD 4HM2A 1NTKE 1SQPE 4PD4E 3VMGD 1NTME 1UUWA 3TGUE 3H1JE 4EMJB 1EG9A 4HM7A 3H1LE 4AAYB 2NUMA 2A06E 2DE6D 2BCCE 3GZYA 3L70E 4QDCA 2B24A 2YFIA 3H1KE 2FYNC 1Q90C 2E75D 3L73E 4HM8A
chains in the Genus database with same CATH superfamily
1ZRTE 4NBBD 2HMNA 4QCKA 3GCEA 4HM3A 4QUPA 3EN1A 1SQQE 2GBWA 2QPZA 3BCCE 1BCCE 5KKZC 4OGQD 1SQBE 4NBFD 2E4PA 2HMJA 3C0DA 1SQVE 4HM1A 1NDOA 2GBXA 3EQQA 4HKVA 3CXHE 2ZT9D 1O7MA 5KLVE 4NBHD 2E74D 4NBCD 3L74E 2E4QA 3GTEA 2HMLA 2ZYLA 1P84E 2NVEA 3L71E 2QJKC 2XSHA 2JZAA 3VMHD 3VMID 5AEUA 2XRXA 1NYKA 4NB8D 3AZCA 3FOUA 1UUVA 1VM9A 2JO6A 3GZXA 4QDDA 2I7FA 5CXMA 2QJYC 3N0QA 4H44D 3D89A 3H1HE 1ULJA 3GL0A 1O7PA 2HMOA 3GOBA 2E76D 5KLIC 3VCAA 2BMQA 5BOKA 1WQLA 1RFSA 3CWBE 3L72E 2HMKA 1SQXE 2YIUC 1NU1E 1SJGA 4HM6A 4P1CH 2D2CD 3L75E 1JM1A 2BMRA 2CKFA 2FYUE 4NBAD 3GKEA 2NUKA 1O7WA 4H0LD 3DQYA 2XSOA 1VCKA 1EZVE 4NBGD 1FQTA 4PV1D 1O7GA 1BE3E 2QJPC 4QUQA 3GB4A 5HL4A 4NBED 5AEWA 1PP9E 1PPJE 1RIEA 2B1XA 2DE5D 3VCPA 4QURA 1O7HA 2BMOA 2YFLA 4AIVA 2NWFA 2IBZE 2DE7D 3CX5E 3H1IE 4HM5A 2XR8A 4QDFA 2YFJA 1ULIA 4U3FE 3GTSA 4HM0A 2NVFA 2Q3WA 4QDFB 2HMMA 3GL2A 1O7NA 4NB9D 1L0LE 4HJLA 1G8KB 1KB9E 1KYOE 1VF5D 1NTZE 1G8JB 4HM4A 4P1BH 2NVGA 4H13D 2YVJB 1L0NE 4NBDD 4HM2A 1NTKE 1SQPE 4PD4E 3VMGD 1NTME 1UUWA 3TGUE 3H1JE 4EMJB 1EG9A 4HM7A 3H1LE 4AAYB 2NUMA 2A06E 2DE6D 2BCCE 3GZYA 3L70E 4QDCA 2B24A 2YFIA 3H1KE 2FYNC 1Q90C 2E75D 3L73E 4HM8A
chains in the Genus database with same CATH topology
1ZRTE 4NBBD 2HMNA 4QCKA 3GCEA 4HM3A 4QUPA 3EN1A 1SQQE 2GBWA 2QPZA 3BCCE 1BCCE 5KKZC 4OGQD 1SQBE 4NBFD 2E4PA 2HMJA 3C0DA 1SQVE 4HM1A 1NDOA 2GBXA 3EQQA 4HKVA 3CXHE 2ZT9D 1O7MA 5KLVE 4NBHD 2E74D 4NBCD 3L74E 2E4QA 3GTEA 2HMLA 2ZYLA 1P84E 2NVEA 3L71E 2QJKC 2XSHA 2JZAA 3VMHD 3VMID 5AEUA 2XRXA 1NYKA 4NB8D 3AZCA 3FOUA 1UUVA 1VM9A 2JO6A 3GZXA 4QDDA 2I7FA 5CXMA 2QJYC 3N0QA 4H44D 3D89A 3H1HE 1ULJA 3GL0A 1O7PA 2HMOA 3GOBA 2E76D 5KLIC 3VCAA 2BMQA 5BOKA 1WQLA 1RFSA 3CWBE 3L72E 2HMKA 1SQXE 2YIUC 1NU1E 1SJGA 4HM6A 4P1CH 2D2CD 3L75E 1JM1A 2BMRA 2CKFA 2FYUE 4NBAD 3GKEA 2NUKA 1O7WA 4H0LD 3DQYA 2XSOA 1VCKA 1EZVE 4NBGD 1FQTA 4PV1D 1O7GA 1BE3E 2QJPC 4QUQA 3GB4A 5HL4A 4NBED 5AEWA 1PP9E 1PPJE 1RIEA 2B1XA 2DE5D 3VCPA 4QURA 1O7HA 2BMOA 2YFLA 4AIVA 2NWFA 2IBZE 2DE7D 3CX5E 3H1IE 4HM5A 2XR8A 4QDFA 2YFJA 1ULIA 4U3FE 3GTSA 4HM0A 2NVFA 2Q3WA 4QDFB 2HMMA 3GL2A 1O7NA 4NB9D 1L0LE 4HJLA 1G8KB 1KB9E 1KYOE 1VF5D 1NTZE 1G8JB 4HM4A 4P1BH 2NVGA 4H13D 2YVJB 1L0NE 4NBDD 4HM2A 1NTKE 1SQPE 4PD4E 3VMGD 1NTME 1UUWA 3TGUE 3H1JE 4EMJB 1EG9A 4HM7A 3H1LE 4AAYB 2NUMA 2A06E 2DE6D 2BCCE 3GZYA 3L70E 4QDCA 2B24A 2YFIA 3H1KE 2FYNC 1Q90C 2E75D 3L73E 4HM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZRT E;  4NBB D;  2HMN A;  4QCK A;  3GCE A;  4HM3 A;  4QUP A;  3EN1 A;  1SQQ E;  2GBW A;  2QPZ A;  3BCC E;  1BCC E;  5KKZ C;  4OGQ D;  1SQB E;  4NBF D;  2E4P A;  2HMJ A;  3C0D A;  1SQV E;  4HM1 A;  1NDO A;  2GBX A;  3EQQ A;  4HKV A;  3CXH E;  2ZT9 D;  1O7M A;  5KLV E;  4NBH D;  2E74 D;  4NBC D;  3L74 E;  2E4Q A;  3GTE A;  2HML A;  2ZYL A;  1P84 E;  2NVE A;  3L71 E;  2QJK C;  2XSH A;  2JZA A;  3VMH D;  3VMI D;  5AEU A;  2XRX A;  1NYK A;  4NB8 D;  3AZC A;  3FOU A;  1UUV A;  1VM9 A;  2JO6 A;  3GZX A;  4QDD A;  2I7F A;  5CXM A;  2QJY C;  3N0Q A;  4H44 D;  3D89 A;  3H1H E;  1ULJ A;  3GL0 A;  1O7P A;  2HMO A;  3GOB A;  2E76 D;  5KLI C;  3VCA A;  2BMQ A;  5BOK A;  1WQL A;  1RFS A;  3CWB E;  3L72 E;  2HMK A;  1SQX E;  2YIU C;  1NU1 E;  1SJG A;  4HM6 A;  4P1C H;  2D2C D;  3L75 E;  1JM1 A;  2BMR A;  2CKF A;  2FYU E;  4NBA D;  3GKE A;  2NUK A;  1O7W A;  4H0L D;  3DQY A;  2XSO A;  1VCK A;  1EZV E;  4NBG D;  1FQT A;  4PV1 D;  1O7G A;  1BE3 E;  2QJP C;  4QUQ A;  3GB4 A;  5HL4 A;  4NBE D;  5AEW A;  1PP9 E;  1PPJ E;  1RIE A;  2B1X A;  2DE5 D;  3VCP A;  4QUR A;  1O7H A;  2BMO A;  2YFL A;  4AIV A;  2NWF A;  2IBZ E;  2DE7 D;  3CX5 E;  3H1I E;  4HM5 A;  2XR8 A;  4QDF A;  2YFJ A;  1ULI A;  4U3F E;  3GTS A;  4HM0 A;  2NVF A;  2Q3W A;  4QDF B;  2HMM A;  3GL2 A;  1O7N A;  4NB9 D;  1L0L E;  4HJL A;  1G8K B;  1KB9 E;  1KYO E;  1VF5 D;  1NTZ E;  1G8J B;  4HM4 A;  4P1B H;  2NVG A;  4H13 D;  2YVJ B;  1L0N E;  4NBD D;  4HM2 A;  1NTK E;  1SQP E;  4PD4 E;  3VMG D;  1NTM E;  1UUW A;  3TGU E;  3H1J E;  4EMJ B;  1EG9 A;  4HM7 A;  3H1L E;  4AAY B;  2NUM A;  2A06 E;  2DE6 D;  2BCC E;  3GZY A;  3L70 E;  4QDC A;  2B24 A;  2YFI A;  3H1K E;  2FYN C;  1Q90 C;  2E75 D;  3L73 E;  4HM8 A; 
#chains in the Genus database with same CATH topology
 1ZRT E;  4NBB D;  2HMN A;  4QCK A;  3GCE A;  4HM3 A;  4QUP A;  3EN1 A;  1SQQ E;  2GBW A;  2QPZ A;  3BCC E;  1BCC E;  5KKZ C;  4OGQ D;  1SQB E;  4NBF D;  2E4P A;  2HMJ A;  3C0D A;  1SQV E;  4HM1 A;  1NDO A;  2GBX A;  3EQQ A;  4HKV A;  3CXH E;  2ZT9 D;  1O7M A;  5KLV E;  4NBH D;  2E74 D;  4NBC D;  3L74 E;  2E4Q A;  3GTE A;  2HML A;  2ZYL A;  1P84 E;  2NVE A;  3L71 E;  2QJK C;  2XSH A;  2JZA A;  3VMH D;  3VMI D;  5AEU A;  2XRX A;  1NYK A;  4NB8 D;  3AZC A;  3FOU A;  1UUV A;  1VM9 A;  2JO6 A;  3GZX A;  4QDD A;  2I7F A;  5CXM A;  2QJY C;  3N0Q A;  4H44 D;  3D89 A;  3H1H E;  1ULJ A;  3GL0 A;  1O7P A;  2HMO A;  3GOB A;  2E76 D;  5KLI C;  3VCA A;  2BMQ A;  5BOK A;  1WQL A;  1RFS A;  3CWB E;  3L72 E;  2HMK A;  1SQX E;  2YIU C;  1NU1 E;  1SJG A;  4HM6 A;  4P1C H;  2D2C D;  3L75 E;  1JM1 A;  2BMR A;  2CKF A;  2FYU E;  4NBA D;  3GKE A;  2NUK A;  1O7W A;  4H0L D;  3DQY A;  2XSO A;  1VCK A;  1EZV E;  4NBG D;  1FQT A;  4PV1 D;  1O7G A;  1BE3 E;  2QJP C;  4QUQ A;  3GB4 A;  5HL4 A;  4NBE D;  5AEW A;  1PP9 E;  1PPJ E;  1RIE A;  2B1X A;  2DE5 D;  3VCP A;  4QUR A;  1O7H A;  2BMO A;  2YFL A;  4AIV A;  2NWF A;  2IBZ E;  2DE7 D;  3CX5 E;  3H1I E;  4HM5 A;  2XR8 A;  4QDF A;  2YFJ A;  1ULI A;  4U3F E;  3GTS A;  4HM0 A;  2NVF A;  2Q3W A;  4QDF B;  2HMM A;  3GL2 A;  1O7N A;  4NB9 D;  1L0L E;  4HJL A;  1G8K B;  1KB9 E;  1KYO E;  1VF5 D;  1NTZ E;  1G8J B;  4HM4 A;  4P1B H;  2NVG A;  4H13 D;  2YVJ B;  1L0N E;  4NBD D;  4HM2 A;  1NTK E;  1SQP E;  4PD4 E;  3VMG D;  1NTM E;  1UUW A;  3TGU E;  3H1J E;  4EMJ B;  1EG9 A;  4HM7 A;  3H1L E;  4AAY B;  2NUM A;  2A06 E;  2DE6 D;  2BCC E;  3GZY A;  3L70 E;  4QDC A;  2B24 A;  2YFI A;  3H1K E;  2FYN C;  1Q90 C;  2E75 D;  3L73 E;  4HM8 A; 
#chains in the Genus database with same CATH homology
 1ZRT E;  4NBB D;  2HMN A;  4QCK A;  3GCE A;  4HM3 A;  4QUP A;  3EN1 A;  1SQQ E;  2GBW A;  2QPZ A;  3BCC E;  1BCC E;  5KKZ C;  4OGQ D;  1SQB E;  4NBF D;  2E4P A;  2HMJ A;  3C0D A;  1SQV E;  4HM1 A;  1NDO A;  2GBX A;  3EQQ A;  4HKV A;  3CXH E;  2ZT9 D;  1O7M A;  5KLV E;  4NBH D;  2E74 D;  4NBC D;  3L74 E;  2E4Q A;  3GTE A;  2HML A;  2ZYL A;  1P84 E;  2NVE A;  3L71 E;  2QJK C;  2XSH A;  2JZA A;  3VMH D;  3VMI D;  5AEU A;  2XRX A;  1NYK A;  4NB8 D;  3AZC A;  3FOU A;  1UUV A;  1VM9 A;  2JO6 A;  3GZX A;  4QDD A;  2I7F A;  5CXM A;  2QJY C;  3N0Q A;  4H44 D;  3D89 A;  3H1H E;  1ULJ A;  3GL0 A;  1O7P A;  2HMO A;  3GOB A;  2E76 D;  5KLI C;  3VCA A;  2BMQ A;  5BOK A;  1WQL A;  1RFS A;  3CWB E;  3L72 E;  2HMK A;  1SQX E;  2YIU C;  1NU1 E;  1SJG A;  4HM6 A;  4P1C H;  2D2C D;  3L75 E;  1JM1 A;  2BMR A;  2CKF A;  2FYU E;  4NBA D;  3GKE A;  2NUK A;  1O7W A;  4H0L D;  3DQY A;  2XSO A;  1VCK A;  1EZV E;  4NBG D;  1FQT A;  4PV1 D;  1O7G A;  1BE3 E;  2QJP C;  4QUQ A;  3GB4 A;  5HL4 A;  4NBE D;  5AEW A;  1PP9 E;  1PPJ E;  1RIE A;  2B1X A;  2DE5 D;  3VCP A;  4QUR A;  1O7H A;  2BMO A;  2YFL A;  4AIV A;  2NWF A;  2IBZ E;  2DE7 D;  3CX5 E;  3H1I E;  4HM5 A;  2XR8 A;  4QDF A;  2YFJ A;  1ULI A;  4U3F E;  3GTS A;  4HM0 A;  2NVF A;  2Q3W A;  4QDF B;  2HMM A;  3GL2 A;  1O7N A;  4NB9 D;  1L0L E;  4HJL A;  1G8K B;  1KB9 E;  1KYO E;  1VF5 D;  1NTZ E;  1G8J B;  4HM4 A;  4P1B H;  2NVG A;  4H13 D;  2YVJ B;  1L0N E;  4NBD D;  4HM2 A;  1NTK E;  1SQP E;  4PD4 E;  3VMG D;  1NTM E;  1UUW A;  3TGU E;  3H1J E;  4EMJ B;  1EG9 A;  4HM7 A;  3H1L E;  4AAY B;  2NUM A;  2A06 E;  2DE6 D;  2BCC E;  3GZY A;  3L70 E;  4QDC A;  2B24 A;  2YFI A;  3H1K E;  2FYN C;  1Q90 C;  2E75 D;  3L73 E;  4HM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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