1VEEA

Nmr structure of the hypothetical rhodanese domain at4g01050 from arabidopsis thaliana
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
134
structure length
134
Chain Sequence
GSSGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords proline-rich protein family
publication title Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 30
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2004-03-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 1veeA00
3O3WA 3HZUA 1C25A 2GWFA 1T3KA 2IFDA 1CWTA 1DP2A 1H4MX 1CWSA 4WH9A 3GK5A 5LAMA 3R2UA 1H4KX 1BOHA 3HWIA 1CWRA 3MZZA 3ILMA 5LAOA 1VEEA 1GN0A 1HZMA 3K9RA 2EG4A 5HBLA 1ORBA 2OUCA 3I2VA 2JTQA 1YM9A 3OP3A 2JTSA 3FOJA 1OKGA 3AAXA 3NTAA 5HBOA 1UARA 3ICSA 2UZQA 3TG3A 1E0CA 1WV9A 4JGTA 2JTRA 4OCGA 1YS0A 3FNJA 3ICRA 3NHVA 1YT8A 3NT6A 4WH7A 2A2KA 2DCQA 3UTNX 5HPAA 3AAYA 2ORAA 3G5JA 2EG4B 2MRMA 5HBQA 1URHA 2IFVA 2FSXA 2HHGA 3TG1B 1GMXA 2VSWA 1TQ1A 3OLHA 3P3AA 3HIXA 2MOIA 3IWHA 3ICTA 4F67A 3TP9A 3NTDA 1RHSA 2MOLA 1BOIA 3FS5A 1YMDA 3IPOA 5HBPA 3F4AA 1WHBA 2WLRA 1RHDA 2KL3A 2K0ZA 3FLHA 2WLXA 3I3UA 1QB0A 3D1PA 3IPPA 1YMKA 1QXNA 2EG3A 1YMLA 2J6PA
chains in the Genus database with same CATH superfamily
3O3WA 3HZUA 1C25A 2GWFA 1T3KA 2IFDA 1CWTA 1DP2A 1H4MX 1CWSA 4WH9A 3GK5A 5LAMA 3R2UA 1H4KX 2Q82A 1BOHA 3HWIA 1CWRA 3MZZA 3ILMA 5LAOA 1VEEA 1GN0A 1HZMA 3K9RA 2EG4A 5HBLA 1ORBA 2OUCA 3I2VA 2JTQA 1YM9A 3OP3A 2JTSA 3FOJA 1OKGA 3AAXA 3NTAA 5HBOA 1UARA 3ICSA 2UZQA 3TG3A 1E0CA 1WV9A 4JGTA 2JTRA 4OCGA 1YS0A 3FNJA 3ICRA 3NHVA 1YT8A 3NT6A 4WH7A 2A2KA 2DCQA 3UTNX 5HPAA 3AAYA 2ORAA 3G5JA 2EG4B 2MRMA 5HBQA 1URHA 2IFVA 2FSXA 2HHGA 3TG1B 1GMXA 2VSWA 1TQ1A 3OLHA 3P3AA 3HIXA 2MOIA 3IWHA 3ICTA 4F67A 3TP9A 3NTDA 1RHSA 2MOLA 1BOIA 3FS5A 1YMDA 3IPOA 5HBPA 3F4AA 1WHBA 2WLRA 1RHDA 2KL3A 2K0ZA 3FLHA 2WLXA 3I3UA 1QB0A 3D1PA 3IPPA 1YMKA 1QXNA 2EG3A 1YMLA 2J6PA
chains in the Genus database with same CATH topology
3O3WA 3HZUA 1C25A 2GWFA 1T3KA 2IFDA 1CWTA 1DP2A 1H4MX 1CWSA 4WH9A 3GK5A 5LAMA 3R2UA 1H4KX 1BOHA 3HWIA 1CWRA 3MZZA 3ILMA 5LAOA 1VEEA 1GN0A 1HZMA 3K9RA 2EG4A 5HBLA 1ORBA 2OUCA 3I2VA 2JTQA 1YM9A 3OP3A 2JTSA 3FOJA 1OKGA 3AAXA 3NTAA 5HBOA 1UARA 3ICSA 2UZQA 3TG3A 1E0CA 1WV9A 4JGTA 2JTRA 4OCGA 1YS0A 3FNJA 3ICRA 3NHVA 1YT8A 3NT6A 4WH7A 2A2KA 2DCQA 3UTNX 5HPAA 3AAYA 2ORAA 3G5JA 2EG4B 2MRMA 5HBQA 1URHA 2IFVA 2FSXA 2HHGA 3TG1B 1GMXA 2VSWA 1TQ1A 3OLHA 3P3AA 3HIXA 2MOIA 3IWHA 3ICTA 4F67A 3TP9A 3NTDA 1RHSA 2MOLA 1BOIA 3FS5A 1YMDA 3IPOA 5HBPA 3F4AA 1WHBA 2WLRA 1RHDA 2KL3A 2K0ZA 3FLHA 2WLXA 3I3UA 1QB0A 3D1PA 3IPPA 1YMKA 1QXNA 2EG3A 1YMLA 2J6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O3W A;  3HZU A;  1C25 A;  2GWF A;  1T3K A;  2IFD A;  1CWT A;  1DP2 A;  1H4M X;  1CWS A;  4WH9 A;  3GK5 A;  5LAM A;  3R2U A;  1H4K X;  1BOH A;  3HWI A;  1CWR A;  3MZZ A;  3ILM A;  5LAO A;  1VEE A;  1GN0 A;  1HZM A;  3K9R A;  2EG4 A;  5HBL A;  1ORB A;  2OUC A;  3I2V A;  2JTQ A;  1YM9 A;  3OP3 A;  2JTS A;  3FOJ A;  1OKG A;  3AAX A;  3NTA A;  5HBO A;  1UAR A;  3ICS A;  2UZQ A;  3TG3 A;  1E0C A;  1WV9 A;  4JGT A;  2JTR A;  4OCG A;  1YS0 A;  3FNJ A;  3ICR A;  3NHV A;  1YT8 A;  3NT6 A;  4WH7 A;  2A2K A;  2DCQ A;  3UTN X;  5HPA A;  3AAY A;  2ORA A;  3G5J A;  2EG4 B;  2MRM A;  5HBQ A;  1URH A;  2IFV A;  2FSX A;  2HHG A;  3TG1 B;  1GMX A;  2VSW A;  1TQ1 A;  3OLH A;  3P3A A;  3HIX A;  2MOI A;  3IWH A;  3ICT A;  4F67 A;  3TP9 A;  3NTD A;  1RHS A;  2MOL A;  1BOI A;  3FS5 A;  1YMD A;  3IPO A;  5HBP A;  3F4A A;  1WHB A;  2WLR A;  1RHD A;  2KL3 A;  2K0Z A;  3FLH A;  2WLX A;  3I3U A;  1QB0 A;  3D1P A;  3IPP A;  1YMK A;  1QXN A;  2EG3 A;  1YML A;  2J6P A; 
#chains in the Genus database with same CATH topology
 3O3W A;  3HZU A;  1C25 A;  2GWF A;  1T3K A;  2IFD A;  1CWT A;  1DP2 A;  1H4M X;  1CWS A;  4WH9 A;  3GK5 A;  5LAM A;  3R2U A;  1H4K X;  2Q82 A;  1BOH A;  3HWI A;  1CWR A;  3MZZ A;  3ILM A;  5LAO A;  1VEE A;  1GN0 A;  1HZM A;  3K9R A;  2EG4 A;  5HBL A;  1ORB A;  2OUC A;  3I2V A;  2JTQ A;  1YM9 A;  3OP3 A;  2JTS A;  3FOJ A;  1OKG A;  3AAX A;  3NTA A;  5HBO A;  1UAR A;  3ICS A;  2UZQ A;  3TG3 A;  1E0C A;  1WV9 A;  4JGT A;  2JTR A;  4OCG A;  1YS0 A;  3FNJ A;  3ICR A;  3NHV A;  1YT8 A;  3NT6 A;  4WH7 A;  2A2K A;  2DCQ A;  3UTN X;  5HPA A;  3AAY A;  2ORA A;  3G5J A;  2EG4 B;  2MRM A;  5HBQ A;  1URH A;  2IFV A;  2FSX A;  2HHG A;  3TG1 B;  1GMX A;  2VSW A;  1TQ1 A;  3OLH A;  3P3A A;  3HIX A;  2MOI A;  3IWH A;  3ICT A;  4F67 A;  3TP9 A;  3NTD A;  1RHS A;  2MOL A;  1BOI A;  3FS5 A;  1YMD A;  3IPO A;  5HBP A;  3F4A A;  1WHB A;  2WLR A;  1RHD A;  2KL3 A;  2K0Z A;  3FLH A;  2WLX A;  3I3U A;  1QB0 A;  3D1P A;  3IPP A;  1YMK A;  1QXN A;  2EG3 A;  1YML A;  2J6P A; 
#chains in the Genus database with same CATH homology
 3O3W A;  3HZU A;  1C25 A;  2GWF A;  1T3K A;  2IFD A;  1CWT A;  1DP2 A;  1H4M X;  1CWS A;  4WH9 A;  3GK5 A;  5LAM A;  3R2U A;  1H4K X;  1BOH A;  3HWI A;  1CWR A;  3MZZ A;  3ILM A;  5LAO A;  1VEE A;  1GN0 A;  1HZM A;  3K9R A;  2EG4 A;  5HBL A;  1ORB A;  2OUC A;  3I2V A;  2JTQ A;  1YM9 A;  3OP3 A;  2JTS A;  3FOJ A;  1OKG A;  3AAX A;  3NTA A;  5HBO A;  1UAR A;  3ICS A;  2UZQ A;  3TG3 A;  1E0C A;  1WV9 A;  4JGT A;  2JTR A;  4OCG A;  1YS0 A;  3FNJ A;  3ICR A;  3NHV A;  1YT8 A;  3NT6 A;  4WH7 A;  2A2K A;  2DCQ A;  3UTN X;  5HPA A;  3AAY A;  2ORA A;  3G5J A;  2EG4 B;  2MRM A;  5HBQ A;  1URH A;  2IFV A;  2FSX A;  2HHG A;  3TG1 B;  1GMX A;  2VSW A;  1TQ1 A;  3OLH A;  3P3A A;  3HIX A;  2MOI A;  3IWH A;  3ICT A;  4F67 A;  3TP9 A;  3NTD A;  1RHS A;  2MOL A;  1BOI A;  3FS5 A;  1YMD A;  3IPO A;  5HBP A;  3F4A A;  1WHB A;  2WLR A;  1RHD A;  2KL3 A;  2K0Z A;  3FLH A;  2WLX A;  3I3U A;  1QB0 A;  3D1P A;  3IPP A;  1YMK A;  1QXN A;  2EG3 A;  1YML A;  2J6P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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