1VFIA

Solution structure of vanabin2 (ruh-017), a vanadium-binding protein from ascidia sydneiensis samea
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
95
structure length
95
Chain Sequence
ISEFAPVDCKGQCTTPCEPLTACKEKCAESCETSADKKTCRRNCKKADCEPQDKVCDACRMKCHKACRAANCASECPKHEHKSDTCRACMKTNCK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords vanadium-binding protein 2
publication title Solution Structure of Vanabin2, a Vanadium(IV)-Binding Protein from the Vanadium-Rich Ascidian Ascidia sydneiensis samea
pubmed doi rcsb
source organism Ascidia sydneiensis samea
total genus 27
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2004-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11437 Vanabin-2 Vanadium-binding protein 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.100 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1vfiA00
1VFIA
chains in the Genus database with same CATH superfamily
1HK3A 1MIYA 2BXQA 1MIVA 3MHSB 4EMXA 2BX8A 2BXBA 3LU7A 3FWBC 3M99C 5GINA 3V09A 3V03A 2EFCA 2DBXA 2XW1A 4WA6B 1H5WA 3A75A 4LB9A 2BXGA 3JRYA 5BPKA 4K2CA 2BXEA 3NVMA 1E7BA 2XVUA 5B5TA 5ID9A 5IIXA 2DBUA 1KXPD 3VQIA 1E7FA 1H9ZA 2BXHA 4TQ0A 5IIHA 2VUFA 2BXLA 4DM0A 2K0NA 1FOUA 4ZCGA 2BXDA 2YDFA 4Z9OA 1BKEA 2CKXA 2GUTA 2V36A 3WHRA 1BM0A 4GDXA 5DQFA 4W4UB 1E7IA 3UIVA 3SIVB 2OT3A 1J78A 2Z8KA 2EFDA 2KWFA 1E78A 4HGMB 2Z8IA 1MM8A 2NQOA 4JK4A 4ZBRA 3PLAA 1SB0A 4FK5B 1E7HA 4Z69A 1MUHA 4BY9C 1HK1A 2LXTA 4C31B 1O9XA 1E7AA 2Z8JA 2QM6A 4OTTA 2LXSA 2OZBB 4L8UA 1VFIA 3CX9A 3A73A 4S1YA 1GNIA 4TQ1A 2BXCA 1HK5A 3KIKA 4F5TA 4LUHA 2BXAA 4GDLB 4LA0A 1LNSA 4F5UA 5IIUA 2BXOA 3WHQA 4IW1A 3LU8A 4F5SA 1AO6A 5GIOA 1MIWA 2DBWA 2VUEA 4L9KA 4NAWB 4OR0A 5D7GA 5GIPA 4ZUXV 4K71A 1HK2A 1UORA 4OTUA 2BXFA 1J7EA 2XW0A 4D7XA 2EFEA 1E7GA 4DHXB 1NT2B 4LUFA 1N5UA 1VZSA 2ROHA 2XVVA 4MBEC 2VDBA 2BXKA 4I9OA 2NNWA 3BPJA 1IJGA 1JNBA 3FNMA 3NVKA 3LU6A 3H37A 4GG2A 1HK4A 3KJLA 4FJCB 4IW2A 3GA9L 4BKEA 2E0XA 5DBYA 2I2ZA 2XMOA 1TXUA 4G03A 5ID7A 3ECPA 2AJEA 1MA9A 3NMUA 2JUHA 2LQIA 4OT2A 1HA2A 4LB2A 3SIUB 2QHBA 1KW2A 3G9KD 4J2VA 3NVIA 1LOTA 2KBZA 5IJEA 3MHHB 1BJ5A 2DYMA 1MUSA 4G04A 2XVWA 4F5VA 1GNJA 4N0UD 4G01A 3GQXA 4FIPB 1TF0A 3ICXA 5GHKA 2BXPA 3WHSA 4ZBQA 1E7EA 2DYOA 2XSIA 4HGKA 4N3ZA 5HOZA 2BXNA 2LOQA 4GDKB 5FUOA 2LQHA 2BXMA 1E7CA 3FWCC 5IJ5A 2BXIA 4E99A 2E0YA 3GQUA 4ZC6A 5IFOA 1KDXA 4N0FD 4ZBKA 3H3AA 2EFHA 5IJFA 4M70B 3B9LA 3B9MA 2DG5A 3SQJA 2I30A 3JQZA 3W1SA 4PO0A 2QMCA 4L9QA 2XVQA 3TDLA 3V08A 2AGHB
chains in the Genus database with same CATH topology
1HK3A 1MIYA 2BXQA 1MIVA 3MHSB 4EMXA 2BX8A 2BXBA 3LU7A 3FWBC 3M99C 5GINA 3V09A 3V03A 2EFCA 2DBXA 2XW1A 4WA6B 1H5WA 3A75A 4LB9A 2BXGA 3JRYA 5BPKA 4K2CA 2BXEA 3NVMA 1E7BA 2XVUA 5B5TA 5ID9A 5IIXA 2DBUA 1KXPD 3VQIA 1E7FA 1H9ZA 2BXHA 4TQ0A 5IIHA 2VUFA 2BXLA 1FOUA 4ZCGA 2BXDA 2YDFA 4Z9OA 1BKEA 2CKXA 3WHRA 1BM0A 4GDXA 5DQFA 4W4UB 1E7IA 3UIVA 3SIVB 2OT3A 1J78A 2Z8KA 2EFDA 1E78A 4HGMB 2Z8IA 2NQOA 4JK4A 4ZBRA 3PLAA 4FK5B 4Z69A 1E7HA 4BY9C 1HK1A 4C31B 1O9XA 1E7AA 2Z8JA 2QM6A 4OTTA 2OZBB 4L8UA 1VFIA 3CX9A 3A73A 4S1YA 1GNIA 4TQ1A 2BXCA 1HK5A 3KIKA 4F5TA 4LUHA 2BXAA 4GDLB 4LA0A 1LNSA 4F5UA 5IIUA 2BXOA 3WHQA 4IW1A 3LU8A 4F5SA 1AO6A 5GIOA 1MIWA 2DBWA 2VUEA 4L9KA 4NAWB 4OR0A 5D7GA 5GIPA 4ZUXV 4K71A 1HK2A 1UORA 4OTUA 2BXFA 1J7EA 2XW0A 2EFEA 1E7GA 4DHXB 1NT2B 4LUFA 1N5UA 1VZSA 2ROHA 2XVVA 4MBEC 2VDBA 2BXKA 2NNWA 1IJGA 1JNBA 3FNMA 3NVKA 3LU6A 3H37A 4GG2A 1HK4A 3KJLA 4FJCB 4IW2A 3GA9L 4BKEA 2E0XA 5DBYA 2I2ZA 2XMOA 1TXUA 4G03A 5ID7A 2AJEA 1MA9A 3NMUA 2JUHA 4OT2A 1HA2A 4LB2A 3SIUB 2QHBA 1KW2A 3G9KD 4J2VA 3NVIA 1LOTA 2KBZA 5IJEA 3MHHB 1BJ5A 2DYMA 4G04A 2XVWA 4F5VA 1GNJA 4N0UD 4G01A 3GQXA 4FIPB 1TF0A 3ICXA 5GHKA 2BXPA 3WHSA 4ZBQA 1E7EA 2DYOA 2XSIA 4HGKA 4N3ZA 5HOZA 2BXNA 2LOQA 4GDKB 5FUOA 2BXMA 1E7CA 3FWCC 5IJ5A 2BXIA 4E99A 2E0YA 3GQUA 4ZC6A 5IFOA 4N0FD 4ZBKA 3H3AA 2EFHA 5IJFA 4M70B 3B9LA 3B9MA 2DG5A 3SQJA 2I30A 3JQZA 3W1SA 4PO0A 2QMCA 4L9QA 2XVQA 3TDLA 3V08A 2V36A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VFI A; 
#chains in the Genus database with same CATH topology
 1HK3 A;  1MIY A;  2BXQ A;  1MIV A;  3MHS B;  4EMX A;  2BX8 A;  2BXB A;  3LU7 A;  3FWB C;  3M99 C;  5GIN A;  3V09 A;  3V03 A;  2EFC A;  2DBX A;  2XW1 A;  4WA6 B;  1H5W A;  3A75 A;  4LB9 A;  2BXG A;  3JRY A;  5BPK A;  4K2C A;  2BXE A;  3NVM A;  1E7B A;  2XVU A;  5B5T A;  5ID9 A;  5IIX A;  2DBU A;  1KXP D;  3VQI A;  1E7F A;  1H9Z A;  2BXH A;  4TQ0 A;  5IIH A;  2VUF A;  2BXL A;  4DM0 A;  2K0N A;  1FOU A;  4ZCG A;  2BXD A;  2YDF A;  4Z9O A;  1BKE A;  2CKX A;  2GUT A;  2V36 A;  3WHR A;  1BM0 A;  4GDX A;  5DQF A;  4W4U B;  1E7I A;  3UIV A;  3SIV B;  2OT3 A;  1J78 A;  2Z8K A;  2EFD A;  2KWF A;  1E78 A;  4HGM B;  2Z8I A;  1MM8 A;  2NQO A;  4JK4 A;  4ZBR A;  3PLA A;  1SB0 A;  4FK5 B;  1E7H A;  4Z69 A;  1MUH A;  4BY9 C;  1HK1 A;  2LXT A;  4C31 B;  1O9X A;  1E7A A;  2Z8J A;  2QM6 A;  4OTT A;  2LXS A;  2OZB B;  4L8U A;  1VFI A;  3CX9 A;  3A73 A;  4S1Y A;  1GNI A;  4TQ1 A;  2BXC A;  1HK5 A;  3KIK A;  4F5T A;  4LUH A;  2BXA A;  4GDL B;  4LA0 A;  1LNS A;  4F5U A;  5IIU A;  2BXO A;  3WHQ A;  4IW1 A;  3LU8 A;  4F5S A;  1AO6 A;  5GIO A;  1MIW A;  2DBW A;  2VUE A;  4L9K A;  4NAW B;  4OR0 A;  5D7G A;  5GIP A;  4ZUX V;  4K71 A;  1HK2 A;  1UOR A;  4OTU A;  2BXF A;  1J7E A;  2XW0 A;  4D7X A;  2EFE A;  1E7G A;  4DHX B;  1NT2 B;  4LUF A;  1N5U A;  1VZS A;  2ROH A;  2XVV A;  4MBE C;  2VDB A;  2BXK A;  4I9O A;  2NNW A;  3BPJ A;  1IJG A;  1JNB A;  3FNM A;  3NVK A;  3LU6 A;  3H37 A;  4GG2 A;  1HK4 A;  3KJL A;  4FJC B;  4IW2 A;  3GA9 L;  4BKE A;  2E0X A;  5DBY A;  2I2Z A;  2XMO A;  1TXU A;  4G03 A;  5ID7 A;  3ECP A;  2AJE A;  1MA9 A;  3NMU A;  2JUH A;  2LQI A;  4OT2 A;  1HA2 A;  4LB2 A;  3SIU B;  2QHB A;  1KW2 A;  3G9K D;  4J2V A;  3NVI A;  1LOT A;  2KBZ A;  5IJE A;  3MHH B;  1BJ5 A;  2DYM A;  1MUS A;  4G04 A;  2XVW A;  4F5V A;  1GNJ A;  4N0U D;  4G01 A;  3GQX A;  4FIP B;  1TF0 A;  3ICX A;  5GHK A;  2BXP A;  3WHS A;  4ZBQ A;  1E7E A;  2DYO A;  2XSI A;  4HGK A;  4N3Z A;  5HOZ A;  2BXN A;  2LOQ A;  4GDK B;  5FUO A;  2LQH A;  2BXM A;  1E7C A;  3FWC C;  5IJ5 A;  2BXI A;  4E99 A;  2E0Y A;  3GQU A;  4ZC6 A;  5IFO A;  1KDX A;  4N0F D;  4ZBK A;  3H3A A;  2EFH A;  5IJF A;  4M70 B;  3B9L A;  3B9M A;  2DG5 A;  3SQJ A;  2I30 A;  3JQZ A;  3W1S A;  4PO0 A;  2QMC A;  4L9Q A;  2XVQ A;  3TDL A;  3V08 A;  2AGH B; 
#chains in the Genus database with same CATH homology
 1HK3 A;  1MIY A;  2BXQ A;  1MIV A;  3MHS B;  4EMX A;  2BX8 A;  2BXB A;  3LU7 A;  3FWB C;  3M99 C;  5GIN A;  3V09 A;  3V03 A;  2EFC A;  2DBX A;  2XW1 A;  4WA6 B;  1H5W A;  3A75 A;  4LB9 A;  2BXG A;  3JRY A;  5BPK A;  4K2C A;  2BXE A;  3NVM A;  1E7B A;  2XVU A;  5B5T A;  5ID9 A;  5IIX A;  2DBU A;  1KXP D;  3VQI A;  1E7F A;  1H9Z A;  2BXH A;  4TQ0 A;  5IIH A;  2VUF A;  2BXL A;  1FOU A;  4ZCG A;  2BXD A;  2YDF A;  4Z9O A;  1BKE A;  2CKX A;  3WHR A;  1BM0 A;  4GDX A;  5DQF A;  4W4U B;  1E7I A;  3UIV A;  3SIV B;  2OT3 A;  1J78 A;  2Z8K A;  2EFD A;  1E78 A;  4HGM B;  2Z8I A;  2NQO A;  4JK4 A;  4ZBR A;  3PLA A;  4FK5 B;  4Z69 A;  1E7H A;  4BY9 C;  1HK1 A;  4C31 B;  1O9X A;  1E7A A;  2Z8J A;  2QM6 A;  4OTT A;  2OZB B;  4L8U A;  1VFI A;  3CX9 A;  3A73 A;  4S1Y A;  1GNI A;  4TQ1 A;  2BXC A;  1HK5 A;  3KIK A;  4F5T A;  4LUH A;  2BXA A;  4GDL B;  4LA0 A;  1LNS A;  4F5U A;  5IIU A;  2BXO A;  3WHQ A;  4IW1 A;  3LU8 A;  4F5S A;  1AO6 A;  5GIO A;  1MIW A;  2DBW A;  2VUE A;  4L9K A;  4NAW B;  4OR0 A;  5D7G A;  5GIP A;  4ZUX V;  4K71 A;  1HK2 A;  1UOR A;  4OTU A;  2BXF A;  1J7E A;  2XW0 A;  2EFE A;  1E7G A;  4DHX B;  1NT2 B;  4LUF A;  1N5U A;  1VZS A;  2ROH A;  2XVV A;  4MBE C;  2VDB A;  2BXK A;  2NNW A;  1IJG A;  1JNB A;  3FNM A;  3NVK A;  3LU6 A;  3H37 A;  4GG2 A;  1HK4 A;  3KJL A;  4FJC B;  4IW2 A;  3GA9 L;  4BKE A;  2E0X A;  5DBY A;  2I2Z A;  2XMO A;  1TXU A;  4G03 A;  5ID7 A;  2AJE A;  1MA9 A;  3NMU A;  2JUH A;  4OT2 A;  1HA2 A;  4LB2 A;  3SIU B;  2QHB A;  1KW2 A;  3G9K D;  4J2V A;  3NVI A;  1LOT A;  2KBZ A;  5IJE A;  3MHH B;  1BJ5 A;  2DYM A;  4G04 A;  2XVW A;  4F5V A;  1GNJ A;  4N0U D;  4G01 A;  3GQX A;  4FIP B;  1TF0 A;  3ICX A;  5GHK A;  2BXP A;  3WHS A;  4ZBQ A;  1E7E A;  2DYO A;  2XSI A;  4HGK A;  4N3Z A;  5HOZ A;  2BXN A;  2LOQ A;  4GDK B;  5FUO A;  2BXM A;  1E7C A;  3FWC C;  5IJ5 A;  2BXI A;  4E99 A;  2E0Y A;  3GQU A;  4ZC6 A;  5IFO A;  4N0F D;  4ZBK A;  3H3A A;  2EFH A;  5IJF A;  4M70 B;  3B9L A;  3B9M A;  2DG5 A;  3SQJ A;  2I30 A;  3JQZ A;  3W1S A;  4PO0 A;  2QMC A;  4L9Q A;  2XVQ A;  3TDL A;  3V08 A;  2V36 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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