1VFQA

The crystal structure of human coactosin-like protein at 1.9 a resolution
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
132
structure length
132
Chain Sequence
SMATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSELKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Coactosin-like protein
publication title Crystal structure of human coactosin-like protein at 1.9 A resolution
pubmed doi rcsb
source organism Homo sapiens
total genus 46
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2004-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1vfqA00
1CFYA 2LLFA 3L50A 3CIPG 1PD0A 1WFSA 5KYUB 2XF1A 3DAWB 5KYWB 3FG7A 3A5NS 1RGIG 2HD7A 1TVJA 2LJ8A 4Z94G 1AHQA 1M2OA 3EGDA 1CNUA 3EFOA 5A1MA 1JHWA 1V6FA 1YAGG 2NUPA 1T44G 3EGXB 1HQZ1 1NLVG 5KYXA 2L72A 1SVQA 1T2LA 3A5LS 2FH2A 5DD2A 3EH1A 1MDUA 5KYWA 2I2QA 1Q8XA 4JD2H 3FFNA 1P8ZG 1PD1A 1J72A 5HVKB 3EG9B 4BEX1 1D0NA 1YVNG 3A5MS 5IVUA 1TMWA 3EGXA 1COFA 1NM1G 1ESVS 1VFQA 2VACA 4KEDA 5KYYB 1EQYS 1WM4A 4KEFA 4S10C 5FAFA 1C0GS 2FF3A 1F7SA 1T3YA 3EH2A 2LXXA 5KYUA 2VILA 1SVRA 1C0FS 1M2VB 1P8XA 4PKHB 4CBWG 3TU5B 2NUTB 3CJCG 4CBUG 3FG6A 1DEJS 5L6WC 1KCQA 2KVKA 2QTVA 2XFAA 5HVKD 2NUPB 3Q2BA 4PKGG 2FH4A 1NPHA 1UDMA 1M4JA 1SVYA 1M2VA 1PCXA 2MV2A 1WNJA 3CJBG 2FGHA 3EG9A 2MP4A 2W0IA 1AK6A 2VIKA 2NUTA 1Q8GA 3A5OS 4PKIG 1H1VG 1NMDG 4CBXG 1T3XA 2FF6G 4KEEA 5KYNA 1AK7A 1D4XG 1VKKA 5KYYA 2MOTA 3FFKA 5FAEA 3EGDB 3EFOB 3CI5G 1X67A 1QPVA 5KYXB 4LIZA 2D8BA 2FH3A 2FH1A
chains in the Genus database with same CATH superfamily
1CFYA 2LLFA 3L50A 3CIPG 1PD0A 1WFSA 5KYUB 2XF1A 3DAWB 5KYWB 3FG7A 3A5NS 1RGIG 2HD7A 1TVJA 2LJ8A 4Z94G 1AHQA 1M2OA 3EGDA 1CNUA 3EFOA 5A1MA 1JHWA 1V6FA 1YAGG 2NUPA 1T44G 3EGXB 1HQZ1 1NLVG 5KYXA 2L72A 1SVQA 1T2LA 3A5LS 2FH2A 5DD2A 3EH1A 1MDUA 5KYWA 2I2QA 1Q8XA 4JD2H 3FFNA 1P8ZG 1PD1A 1J72A 5HVKB 3EG9B 4BEX1 1D0NA 1YVNG 3A5MS 5IVUA 1TMWA 3EGXA 1COFA 1NM1G 1ESVS 1VFQA 2VACA 4KEDA 5KYYB 1EQYS 1WM4A 4KEFA 4S10C 5FAFA 1C0GS 2FF3A 1F7SA 1T3YA 3EH2A 2LXXA 5KYUA 2VILA 1SVRA 1C0FS 1M2VB 1P8XA 4PKHB 4CBWG 3TU5B 2NUTB 3CJCG 4CBUG 3FG6A 1DEJS 5L6WC 1KCQA 2KVKA 2QTVA 2XFAA 5HVKD 2NUPB 3Q2BA 4PKGG 2FH4A 1NPHA 1UDMA 1M4JA 1SVYA 1M2VA 1PCXA 2MV2A 1WNJA 3CJBG 2FGHA 3EG9A 2MP4A 2W0IA 1AK6A 2VIKA 2NUTA 1Q8GA 3A5OS 4PKIG 1H1VG 1NMDG 4CBXG 1T3XA 2FF6G 4KEEA 5KYNA 1AK7A 1D4XG 1VKKA 5KYYA 2MOTA 3FFKA 5FAEA 3EGDB 3EFOB 3CI5G 1X67A 1QPVA 5KYXB 4LIZA 3DA7A 2D8BA 2FH3A 2FH1A
chains in the Genus database with same CATH topology
1CFYA 2LLFA 3L50A 3CIPG 1PD0A 1WFSA 5KYUB 2XF1A 3DAWB 5KYWB 3FG7A 3A5NS 1RGIG 2HD7A 1TVJA 2LJ8A 4Z94G 1AHQA 1M2OA 3EGDA 1CNUA 3EFOA 5A1MA 1JHWA 1V6FA 1YAGG 2NUPA 1T44G 3EGXB 1HQZ1 1NLVG 5KYXA 2L72A 1SVQA 1T2LA 3A5LS 2FH2A 5DD2A 3EH1A 1MDUA 5KYWA 2I2QA 1Q8XA 4JD2H 3FFNA 1P8ZG 1PD1A 1J72A 5HVKB 3EG9B 4BEX1 1D0NA 1YVNG 3A5MS 5IVUA 1TMWA 3EGXA 1COFA 1NM1G 1ESVS 1VFQA 2VACA 4KEDA 5KYYB 1EQYS 1WM4A 4KEFA 4S10C 5FAFA 1C0GS 2FF3A 1F7SA 1T3YA 3EH2A 2LXXA 5KYUA 2VILA 1SVRA 1C0FS 1M2VB 1P8XA 4PKHB 4CBWG 3TU5B 2NUTB 3CJCG 4CBUG 3FG6A 1DEJS 5L6WC 1KCQA 2KVKA 2QTVA 2XFAA 5HVKD 2NUPB 3Q2BA 4PKGG 2FH4A 1NPHA 1UDMA 1M4JA 1SVYA 1M2VA 1PCXA 2MV2A 1WNJA 3CJBG 2FGHA 3EG9A 2MP4A 2W0IA 1AK6A 2VIKA 2NUTA 1Q8GA 3A5OS 4PKIG 1H1VG 1NMDG 4CBXG 1T3XA 2FF6G 4KEEA 5KYNA 1AK7A 1D4XG 1VKKA 5KYYA 2MOTA 3FFKA 5FAEA 3EGDB 3EFOB 3CI5G 1X67A 1QPVA 5KYXB 4LIZA 3DA7A 2D8BA 2FH3A 2FH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CFY A;  2LLF A;  3L50 A;  3CIP G;  1PD0 A;  1WFS A;  5KYU B;  2XF1 A;  3DAW B;  5KYW B;  3FG7 A;  3A5N S;  1RGI G;  2HD7 A;  1TVJ A;  2LJ8 A;  4Z94 G;  1AHQ A;  1M2O A;  3EGD A;  1CNU A;  3EFO A;  5A1M A;  1JHW A;  1V6F A;  1YAG G;  2NUP A;  1T44 G;  3EGX B;  1HQZ 1;  1NLV G;  5KYX A;  2L72 A;  1SVQ A;  1T2L A;  3A5L S;  2FH2 A;  5DD2 A;  3EH1 A;  1MDU A;  5KYW A;  2I2Q A;  1Q8X A;  4JD2 H;  3FFN A;  1P8Z G;  1PD1 A;  1J72 A;  5HVK B;  3EG9 B;  4BEX 1;  1D0N A;  1YVN G;  3A5M S;  5IVU A;  1TMW A;  3EGX A;  1COF A;  1NM1 G;  1ESV S;  1VFQ A;  2VAC A;  4KED A;  5KYY B;  1EQY S;  1WM4 A;  4KEF A;  4S10 C;  5FAF A;  1C0G S;  2FF3 A;  1F7S A;  1T3Y A;  3EH2 A;  2LXX A;  5KYU A;  2VIL A;  1SVR A;  1C0F S;  1M2V B;  1P8X A;  4PKH B;  4CBW G;  3TU5 B;  2NUT B;  3CJC G;  4CBU G;  3FG6 A;  1DEJ S;  5L6W C;  1KCQ A;  2KVK A;  2QTV A;  2XFA A;  5HVK D;  2NUP B;  3Q2B A;  4PKG G;  2FH4 A;  1NPH A;  1UDM A;  1M4J A;  1SVY A;  1M2V A;  1PCX A;  2MV2 A;  1WNJ A;  3CJB G;  2FGH A;  3EG9 A;  2MP4 A;  2W0I A;  1AK6 A;  2VIK A;  2NUT A;  1Q8G A;  3A5O S;  4PKI G;  1H1V G;  1NMD G;  4CBX G;  1T3X A;  2FF6 G;  4KEE A;  5KYN A;  1AK7 A;  1D4X G;  1VKK A;  5KYY A;  2MOT A;  3FFK A;  5FAE A;  3EGD B;  3EFO B;  3CI5 G;  1X67 A;  1QPV A;  5KYX B;  4LIZ A;  2D8B A;  2FH3 A;  2FH1 A; 
#chains in the Genus database with same CATH topology
 1CFY A;  2LLF A;  3L50 A;  3CIP G;  1PD0 A;  1WFS A;  5KYU B;  2XF1 A;  3DAW B;  5KYW B;  3FG7 A;  3A5N S;  1RGI G;  2HD7 A;  1TVJ A;  2LJ8 A;  4Z94 G;  1AHQ A;  1M2O A;  3EGD A;  1CNU A;  3EFO A;  5A1M A;  1JHW A;  1V6F A;  1YAG G;  2NUP A;  1T44 G;  3EGX B;  1HQZ 1;  1NLV G;  5KYX A;  2L72 A;  1SVQ A;  1T2L A;  3A5L S;  2FH2 A;  5DD2 A;  3EH1 A;  1MDU A;  5KYW A;  2I2Q A;  1Q8X A;  4JD2 H;  3FFN A;  1P8Z G;  1PD1 A;  1J72 A;  5HVK B;  3EG9 B;  4BEX 1;  1D0N A;  1YVN G;  3A5M S;  5IVU A;  1TMW A;  3EGX A;  1COF A;  1NM1 G;  1ESV S;  1VFQ A;  2VAC A;  4KED A;  5KYY B;  1EQY S;  1WM4 A;  4KEF A;  4S10 C;  5FAF A;  1C0G S;  2FF3 A;  1F7S A;  1T3Y A;  3EH2 A;  2LXX A;  5KYU A;  2VIL A;  1SVR A;  1C0F S;  1M2V B;  1P8X A;  4PKH B;  4CBW G;  3TU5 B;  2NUT B;  3CJC G;  4CBU G;  3FG6 A;  1DEJ S;  5L6W C;  1KCQ A;  2KVK A;  2QTV A;  2XFA A;  5HVK D;  2NUP B;  3Q2B A;  4PKG G;  2FH4 A;  1NPH A;  1UDM A;  1M4J A;  1SVY A;  1M2V A;  1PCX A;  2MV2 A;  1WNJ A;  3CJB G;  2FGH A;  3EG9 A;  2MP4 A;  2W0I A;  1AK6 A;  2VIK A;  2NUT A;  1Q8G A;  3A5O S;  4PKI G;  1H1V G;  1NMD G;  4CBX G;  1T3X A;  2FF6 G;  4KEE A;  5KYN A;  1AK7 A;  1D4X G;  1VKK A;  5KYY A;  2MOT A;  3FFK A;  5FAE A;  3EGD B;  3EFO B;  3CI5 G;  1X67 A;  1QPV A;  5KYX B;  4LIZ A;  3DA7 A;  2D8B A;  2FH3 A;  2FH1 A; 
#chains in the Genus database with same CATH homology
 1CFY A;  2LLF A;  3L50 A;  3CIP G;  1PD0 A;  1WFS A;  5KYU B;  2XF1 A;  3DAW B;  5KYW B;  3FG7 A;  3A5N S;  1RGI G;  2HD7 A;  1TVJ A;  2LJ8 A;  4Z94 G;  1AHQ A;  1M2O A;  3EGD A;  1CNU A;  3EFO A;  5A1M A;  1JHW A;  1V6F A;  1YAG G;  2NUP A;  1T44 G;  3EGX B;  1HQZ 1;  1NLV G;  5KYX A;  2L72 A;  1SVQ A;  1T2L A;  3A5L S;  2FH2 A;  5DD2 A;  3EH1 A;  1MDU A;  5KYW A;  2I2Q A;  1Q8X A;  4JD2 H;  3FFN A;  1P8Z G;  1PD1 A;  1J72 A;  5HVK B;  3EG9 B;  4BEX 1;  1D0N A;  1YVN G;  3A5M S;  5IVU A;  1TMW A;  3EGX A;  1COF A;  1NM1 G;  1ESV S;  1VFQ A;  2VAC A;  4KED A;  5KYY B;  1EQY S;  1WM4 A;  4KEF A;  4S10 C;  5FAF A;  1C0G S;  2FF3 A;  1F7S A;  1T3Y A;  3EH2 A;  2LXX A;  5KYU A;  2VIL A;  1SVR A;  1C0F S;  1M2V B;  1P8X A;  4PKH B;  4CBW G;  3TU5 B;  2NUT B;  3CJC G;  4CBU G;  3FG6 A;  1DEJ S;  5L6W C;  1KCQ A;  2KVK A;  2QTV A;  2XFA A;  5HVK D;  2NUP B;  3Q2B A;  4PKG G;  2FH4 A;  1NPH A;  1UDM A;  1M4J A;  1SVY A;  1M2V A;  1PCX A;  2MV2 A;  1WNJ A;  3CJB G;  2FGH A;  3EG9 A;  2MP4 A;  2W0I A;  1AK6 A;  2VIK A;  2NUT A;  1Q8G A;  3A5O S;  4PKI G;  1H1V G;  1NMD G;  4CBX G;  1T3X A;  2FF6 G;  4KEE A;  5KYN A;  1AK7 A;  1D4X G;  1VKK A;  5KYY A;  2MOT A;  3FFK A;  5FAE A;  3EGD B;  3EFO B;  3CI5 G;  1X67 A;  1QPV A;  5KYX B;  4LIZ A;  3DA7 A;  2D8B A;  2FH3 A;  2FH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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