1VGXA

Crystal structure of a autoinducer-2 synthesis protein
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
149
structure length
148
Chain Sequence
ESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMGRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Deinococcus radiodurans
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
molecule keywords S-ribosylhomocysteinase
total genus 41
structure length 148
sequence length 149
chains with identical sequence B
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2003-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1vgxA00
2FQTA 1J6WA 1INNA 1JOEA 2FQOA 1J6XA 1JQWA 1VJEA 4XCHA 5E68A 1VH2A 1JVIA 1IE0A 1J98A 1YCLA 1J6VA 1VGXA
chains in the Genus database with same CATH superfamily
1Y1VC 3TFIA 1O2FB 4C2MC 3K7AC 4A3BK 3S16K 2NVTC 2YU9C 3GEHA 2EBBA 4BBRC 3L4JA 2R7ZA 1TWHC 1TWGK 3GEIA 4GTCA 1BS2A 4P5BA 5C4XC 4YFKA 4A3CK 1BDFA 4Y52C 4JK1A 3GTOC 3S17K 4A3EC 2JA5A 4LR2A 2A69A 3GTQA 5IOQA 3PO3C 3GEEA 1Y1VK 1DCOA 3K7AK 3I4MC 2NVYA 2NVYC 2NVTK 1J6VA 2YU9K 1R9TC 2V6UA 3AQOA 4BBRK 1TWHK 4C3HK 4GTEA 5HL8A 1XZPA 1XXCA 5C4XK 2E2IC 4Y52K 3GTOK 5IYDC 2A6HA 4J3NA 4A3EK 4YFNA 3HOYC 1SFOC 3I4NC 4A93C 3S15C 3I4MK 3NUHA 2NVYK 1TWCA 4A3GC 1TWCC 4KATA 1F93A 1IBAA 1R9TK 4X6AK 4KM9A 2WB1L 3LAPA 3S1NK 1WCMC 1KQ4A 1X31C 1G51A 2E2IK 5D4DA 3CAGA 1EH1A 2VUMC 2BE5A 3PO2C 4QIWD 2JA7A 5IYDK 2JH3A 1J6XA 3HOYK 5IYBC 3OREA 1SFOK 2P5MA 3I4NK 3GTLC 4A93K 3GTLA 1USMA 3S1RK 3S15K 1JOEA 4A3GK 1TWCK 1Y1WA 4WJ3M 2GSUA 2JA6A 3S1MC 4AYBD 3GTMA 2PHCB 2W7VA 3ADAC 5M5XK 5JVOA 1VRQC 1USOA 1ISEA 1I50C 2VUMK 3H0GA 3PO2K 2O5JA 1K83C 5IYBK 3GTLK 3FKIA 4KN4A 1RU0A 3A8KA 3GTPC 2NVXC 1Y1WK 3BUEA 1ZYRA 3S1MK 3GTMK 4FZBA 3GIRA 1C0AA 4LK0A 4MQ9A 5TMFA 2WAQD 1I50K 1O2AA 2PA8L 5FLMC 1JQWA 4YG2A 5EGHA 4BY1C 1ZQ1C 1K83K 1TWGC 1DD5A 3CQZC 3QX3A 1GE9A 2PMZD 2R92A 3N0BA 4YFXA 4GZYA 2R93A 3GTPK 1O26A 2NVXK 1L0WA 3FOFA 4KMHA 1O2BA 3HXAA 5M3FK 4BKWA 4GTLA 3LPXA 1BJTA 4XSZA 5E68A 4RMFA 1IL2A 4BXXC 4MEYA 5FLMK 4OIOA 4A3IC 3FOEA 2R7ZC 4BY1K 4M1XA 4C3HC 2ZUEA 3GTJA 4AH6A 3CQZK 2Y0SL 2R92K 3G4AA 4A3JC 4LLGA 4KASA 3S2DC 2GAHC 4Q4ZA 2JA5C 1WIHA 2CFAA 3TTGA 1PJ5A 3GTQC 2FQOA 1ZVUA 2CFAB 4KC6A 5L46A 4LQYA 1J6WA 1HI9A 3OPFA 4BXXK 4X6AC 5CJ9A 1XZQA 4A3IK 2R7ZK 3S14C 5JFEA 3S1NC 1I6HC 5TMCA 2GSNA 1XZQB 4LOWA 4A3JK 2CW0A 3SZYA 3S2DK 2PPBA 3AD7C 3HKZD 3T01A 2JA5K 3GTQK 1I3QA 3S1RC 2NVQC 3HOVC 4GT9A 1JVIA 4KB2A 3JSTA 3S14K 1J98A 1WQFA 5FJ8K 1I6HK 3A8IA 4KMDA 4OIQA 2E2HA 3HOWC 1WSVA 1B4AA 2O5IA 4G0VA 2JA7C 3Q3QA 1TWAA 2NVQK 3HOVK 2XCOA 4KARA 2ZUFA 1Y1WC 4GFQA 1YX2A 4MEXA 1F7VA 2JA6C 1DCHA 2B63A 4OINA 3GTMC 4XSXA 4WILA 4WJ4A 4KDDA 3GTKA 3HOWK 1IQ0A 4QIWL 4BY7C 1ZBSA 3H0GC 2JA7K 2XCRB 1AB4A 5IOSA 4G7ZA 4C3JC 3MMLB 3FKIC 4P5AA 1B4BA 4AYBL 3V4GA 4BLBA 2ZFZA 2JA6K 2FQTA 5EGEA 1V5VA 4KAWX 4A3DC 3ERED 3GTGA 1EK8A 1IE0A 1YCLA 3L4KA 2XCQA 4BY7K 3HOXC 3H0GK 4LK1A 3IPJA 3VA7A 1F9NA 1I6VA 4C3JK 2R92C 3FKIK 3H3VD 4FM9A 4KN7A 2R93C 4P9SA 2KWAA 4ZH4A 2P8TA 1WORA 5IP9C 4G7OA 1F7UA 1IW7A 4A3DK 3HOZC 1PJ6A 2WAQL 4A3LC 3HOXK 1EI6A 3GDZA 3GTJC 2PMZL 4GTAA 3TFHA 4BBSC 5C4JC 3AH5A 1EQRA 1WOPA 2R93K 4DDQA 2A6EA 1PJ7A 1Y1VA 4KM8A 3AD9C 2JA8C 5IP9K 2E2JC 4Y7NC 4A3FC 4PAAA 5C3EC 3HOZK 2YU9A 1INNA 1WQHA 5M5WK 5M5YK 1TWHA 4A3LK 2GAGC 1TWFA 1TWFC 1EFWA 3GTJK 3TFJA 4BBSK 3GTOA 5C4JK 1VJEA 3HOUC 1HQMA 1O29A 2JA8K 2E2JK 4C2MK 3OEPA 4Y7NK 4A3FK 1I3QC 5C3EK 2RGRA 1R9TA 3LAJA 2A68A 3WODA 1TWFK 2WB1D 1WSRA 3AD8C 4KMAA 3RZOC 3AQPA 4G7HA 2E2IA 1ZXOA 2E2HC 1XZPB 4ILDA 1XPPA 4XCHA 3HOUK 3HKZL 3N0CA 2RH6A 1SFOA 3PO3K 3M3YC 1O25A 1TWAC 3BP3A 3FHZA 1YNNA 1I3QK 2GSOA 3S2HC 4Q5SA 4LJZA 3T00A 4G0WA 4C3IC 1O28A 1WCMA 2B63C 1SMYA 4A3MC 3S1QC 5IYCC 1IS1A 3RZOK 3GTKC 2V6SA 4A3KC 2VUMA 2E2HK 3G4CA 4XLNA 3M3YK 1TWAK 1YNJA 3BP8C 3RZDC 3S2HK 3EQLA 4NOIA 4BLAA 3GSIA 4GTFA 5IOTA 4C3IK 1WCMK 2B63K 3S1QK 4A3MK 5IYCK 1VH2A 4G0UA 3GTGC 3M4OC 1O24A 3A8JA 3GTKK 1I50A 4A3KK 5C44C 1VGXA 1WOSA 2PA8D 4KB4A 2Y3PA 1K83A 2V6TA 1DCPA 4QJVA 4PABA 4OIPA 5CHPA 3RZDK 4QJVB 5IP7C 3GTPA 3N3YA 1XXBA 2NVXA 1UV7A 4C45A 1O27A 5M3MK 1VLOA 4GTBA 4XLPA 4A3BC 3S16C 3DXJA 3GTGK 3M4OK 4O2DA 5C44K 5IORA 1WOOA 3SZZA 2D6FC 1TWGA 4GTDA 3CQZA 4OIRA 5TJ3A 3T02A 1WQGA 2Y0SD 4A3CC 3S0XA 3H3VL 5IP7K 4KMUA 3S17C 1XXAA 1BGWA
chains in the Genus database with same CATH topology
2FQTA 1J6WA 1INNA 1JOEA 2FQOA 1J6XA 1JQWA 1VJEA 4XCHA 5E68A 1VH2A 1JVIA 1IE0A 1J98A 1YCLA 1J6VA 1VGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQT A;  1J6W A;  1INN A;  1JOE A;  2FQO A;  1J6X A;  1JQW A;  1VJE A;  4XCH A;  5E68 A;  1VH2 A;  1JVI A;  1IE0 A;  1J98 A;  1YCL A;  1J6V A;  1VGX A; 
#chains in the Genus database with same CATH topology
 1Y1V C;  3TFI A;  1O2F B;  4C2M C;  3K7A C;  4A3B K;  3S16 K;  2NVT C;  2YU9 C;  3GEH A;  2EBB A;  4BBR C;  3L4J A;  2R7Z A;  1TWH C;  1TWG K;  3GEI A;  4GTC A;  1BS2 A;  4P5B A;  5C4X C;  4YFK A;  4A3C K;  1BDF A;  4Y52 C;  4JK1 A;  3GTO C;  3S17 K;  4A3E C;  2JA5 A;  4LR2 A;  2A69 A;  3GTQ A;  5IOQ A;  3PO3 C;  3GEE A;  1Y1V K;  1DCO A;  3K7A K;  3I4M C;  2NVY A;  2NVY C;  2NVT K;  1J6V A;  2YU9 K;  1R9T C;  2V6U A;  3AQO A;  4BBR K;  1TWH K;  4C3H K;  4GTE A;  5HL8 A;  1XZP A;  1XXC A;  5C4X K;  2E2I C;  4Y52 K;  3GTO K;  5IYD C;  2A6H A;  4J3N A;  4A3E K;  4YFN A;  3HOY C;  1SFO C;  3I4N C;  4A93 C;  3S15 C;  3I4M K;  3NUH A;  2NVY K;  1TWC A;  4A3G C;  1TWC C;  4KAT A;  1F93 A;  1IBA A;  1R9T K;  4X6A K;  4KM9 A;  2WB1 L;  3LAP A;  3S1N K;  1WCM C;  1KQ4 A;  1X31 C;  1G51 A;  2E2I K;  5D4D A;  3CAG A;  1EH1 A;  2VUM C;  2BE5 A;  3PO2 C;  4QIW D;  2JA7 A;  5IYD K;  2JH3 A;  1J6X A;  3HOY K;  5IYB C;  3ORE A;  1SFO K;  2P5M A;  3I4N K;  3GTL C;  4A93 K;  3GTL A;  1USM A;  3S1R K;  3S15 K;  1JOE A;  4A3G K;  1TWC K;  1Y1W A;  4WJ3 M;  2GSU A;  2JA6 A;  3S1M C;  4AYB D;  3GTM A;  2PHC B;  2W7V A;  3ADA C;  5M5X K;  5JVO A;  1VRQ C;  1USO A;  1ISE A;  1I50 C;  2VUM K;  3H0G A;  3PO2 K;  2O5J A;  1K83 C;  5IYB K;  3GTL K;  3FKI A;  4KN4 A;  1RU0 A;  3A8K A;  3GTP C;  2NVX C;  1Y1W K;  3BUE A;  1ZYR A;  3S1M K;  3GTM K;  4FZB A;  3GIR A;  1C0A A;  4LK0 A;  4MQ9 A;  5TMF A;  2WAQ D;  1I50 K;  1O2A A;  2PA8 L;  5FLM C;  1JQW A;  4YG2 A;  5EGH A;  4BY1 C;  1ZQ1 C;  1K83 K;  1TWG C;  1DD5 A;  3CQZ C;  3QX3 A;  1GE9 A;  2PMZ D;  2R92 A;  3N0B A;  4YFX A;  4GZY A;  2R93 A;  3GTP K;  1O26 A;  2NVX K;  1L0W A;  3FOF A;  4KMH A;  1O2B A;  3HXA A;  5M3F K;  4BKW A;  4GTL A;  3LPX A;  1BJT A;  4XSZ A;  5E68 A;  4RMF A;  1IL2 A;  4BXX C;  4MEY A;  5FLM K;  4OIO A;  4A3I C;  3FOE A;  2R7Z C;  4BY1 K;  4M1X A;  4C3H C;  2ZUE A;  3GTJ A;  4AH6 A;  3CQZ K;  2Y0S L;  2R92 K;  3G4A A;  4A3J C;  4LLG A;  4KAS A;  3S2D C;  2GAH C;  4Q4Z A;  2JA5 C;  1WIH A;  2CFA A;  3TTG A;  1PJ5 A;  3GTQ C;  2FQO A;  1ZVU A;  2CFA B;  4KC6 A;  5L46 A;  4LQY A;  1J6W A;  1HI9 A;  3OPF A;  4BXX K;  4X6A C;  5CJ9 A;  1XZQ A;  4A3I K;  2R7Z K;  3S14 C;  5JFE A;  3S1N C;  1I6H C;  5TMC A;  2GSN A;  1XZQ B;  4LOW A;  4A3J K;  2CW0 A;  3SZY A;  3S2D K;  2PPB A;  3AD7 C;  3HKZ D;  3T01 A;  2JA5 K;  3GTQ K;  1I3Q A;  3S1R C;  2NVQ C;  3HOV C;  4GT9 A;  1JVI A;  4KB2 A;  3JST A;  3S14 K;  1J98 A;  1WQF A;  5FJ8 K;  1I6H K;  3A8I A;  4KMD A;  4OIQ A;  2E2H A;  3HOW C;  1WSV A;  1B4A A;  2O5I A;  4G0V A;  2JA7 C;  3Q3Q A;  1TWA A;  2NVQ K;  3HOV K;  2XCO A;  4KAR A;  2ZUF A;  1Y1W C;  4GFQ A;  1YX2 A;  4MEX A;  1F7V A;  2JA6 C;  1DCH A;  2B63 A;  4OIN A;  3GTM C;  4XSX A;  4WIL A;  4WJ4 A;  4KDD A;  3GTK A;  3HOW K;  1IQ0 A;  4QIW L;  4BY7 C;  1ZBS A;  3H0G C;  2JA7 K;  2XCR B;  1AB4 A;  5IOS A;  4G7Z A;  4C3J C;  3MML B;  3FKI C;  4P5A A;  1B4B A;  4AYB L;  3V4G A;  4BLB A;  2ZFZ A;  2JA6 K;  2FQT A;  5EGE A;  1V5V A;  4KAW X;  4A3D C;  3ERE D;  3GTG A;  1EK8 A;  1IE0 A;  1YCL A;  3L4K A;  2XCQ A;  4BY7 K;  3HOX C;  3H0G K;  4LK1 A;  3IPJ A;  3VA7 A;  1F9N A;  1I6V A;  4C3J K;  2R92 C;  3FKI K;  3H3V D;  4FM9 A;  4KN7 A;  2R93 C;  4P9S A;  2KWA A;  4ZH4 A;  2P8T A;  1WOR A;  5IP9 C;  4G7O A;  1F7U A;  1IW7 A;  4A3D K;  3HOZ C;  1PJ6 A;  2WAQ L;  4A3L C;  3HOX K;  1EI6 A;  3GDZ A;  3GTJ C;  2PMZ L;  4GTA A;  3TFH A;  4BBS C;  5C4J C;  3AH5 A;  1EQR A;  1WOP A;  2R93 K;  4DDQ A;  2A6E A;  1PJ7 A;  1Y1V A;  4KM8 A;  3AD9 C;  2JA8 C;  5IP9 K;  2E2J C;  4Y7N C;  4A3F C;  4PAA A;  5C3E C;  3HOZ K;  2YU9 A;  1INN A;  1WQH A;  5M5W K;  5M5Y K;  1TWH A;  4A3L K;  2GAG C;  1TWF A;  1TWF C;  1EFW A;  3GTJ K;  3TFJ A;  4BBS K;  3GTO A;  5C4J K;  1VJE A;  3HOU C;  1HQM A;  1O29 A;  2JA8 K;  2E2J K;  4C2M K;  3OEP A;  4Y7N K;  4A3F K;  1I3Q C;  5C3E K;  2RGR A;  1R9T A;  3LAJ A;  2A68 A;  3WOD A;  1TWF K;  2WB1 D;  1WSR A;  3AD8 C;  4KMA A;  3RZO C;  3AQP A;  4G7H A;  2E2I A;  1ZXO A;  2E2H C;  1XZP B;  4ILD A;  1XPP A;  4XCH A;  3HOU K;  3HKZ L;  3N0C A;  2RH6 A;  1SFO A;  3PO3 K;  3M3Y C;  1O25 A;  1TWA C;  3BP3 A;  3FHZ A;  1YNN A;  1I3Q K;  2GSO A;  3S2H C;  4Q5S A;  4LJZ A;  3T00 A;  4G0W A;  4C3I C;  1O28 A;  1WCM A;  2B63 C;  1SMY A;  4A3M C;  3S1Q C;  5IYC C;  1IS1 A;  3RZO K;  3GTK C;  2V6S A;  4A3K C;  2VUM A;  2E2H K;  3G4C A;  4XLN A;  3M3Y K;  1TWA K;  1YNJ A;  3BP8 C;  3RZD C;  3S2H K;  3EQL A;  4NOI A;  4BLA A;  3GSI A;  4GTF A;  5IOT A;  4C3I K;  1WCM K;  2B63 K;  3S1Q K;  4A3M K;  5IYC K;  1VH2 A;  4G0U A;  3GTG C;  3M4O C;  1O24 A;  3A8J A;  3GTK K;  1I50 A;  4A3K K;  5C44 C;  1VGX A;  1WOS A;  2PA8 D;  4KB4 A;  2Y3P A;  1K83 A;  2V6T A;  1DCP A;  4QJV A;  4PAB A;  4OIP A;  5CHP A;  3RZD K;  4QJV B;  5IP7 C;  3GTP A;  3N3Y A;  1XXB A;  2NVX A;  1UV7 A;  4C45 A;  1O27 A;  5M3M K;  1VLO A;  4GTB A;  4XLP A;  4A3B C;  3S16 C;  3DXJ A;  3GTG K;  3M4O K;  4O2D A;  5C44 K;  5IOR A;  1WOO A;  3SZZ A;  2D6F C;  1TWG A;  4GTD A;  3CQZ A;  4OIR A;  5TJ3 A;  3T02 A;  1WQG A;  2Y0S D;  4A3C C;  3S0X A;  3H3V L;  5IP7 K;  4KMU A;  3S17 C;  1XXA A;  1BGW A; 
#chains in the Genus database with same CATH homology
 2FQT A;  1J6W A;  1INN A;  1JOE A;  2FQO A;  1J6X A;  1JQW A;  1VJE A;  4XCH A;  5E68 A;  1VH2 A;  1JVI A;  1IE0 A;  1J98 A;  1YCL A;  1J6V A;  1VGX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...