1VHUA

Crystal structure of a putative phosphoesterase
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
192
structure length
192
Chain Sequence
MEVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein AF1521
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Archaeoglobus fulgidus
total genus 70
structure length 192
sequence length 192
ec nomenclature
pdb deposition date 2003-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 1vhuA00
5D8NA 4ZY1A 5CBMA 1BLLE 3PEIA 4ZX8A 2VRIA 4JVVA 2EEEA 2AFCA 4JLLA 4ZY0A 5CMSA 3VFQA 3IIDA 1TY8A 3SIJA 2J9AA 3JRUA 1LANA 5CB5A 3SIIA 2EWBA 3EWQA 4ZYQA 3GPGA 3EJFA 4ZX9A 4ESSA 3KR5A 5DUSA 4ETJA 3KQXA 3SIHA 1LAPA 3EWRA 2FXKA 4J5SA 4KYBA 4ZY2A 3KQZA 3H8EA 1ZR5A 3EWOA 3Q6ZA 1BPMA 2DX6A 3SIGA 2FAVA 3H8GA 4J5RA 4KSIA 5CB3A 3GPOA 2FG1A 2L8RA 4JCAA 4R6TA 1ZR3A 4JGKA 5HIHA 4ETKA 4J4ZA 1NJRA 5FSYA 3T8WA 4TU0A 5FSVA 4GVVA 1LAMA 5AILA 4ABLA 2BFQA 3EJGA 4R76A 4K0CA 4J5QA 3EKEA 5FSXA 3Q71A 1SPVA 1LCPA 3IIFA 1VHUA 3GQEA 4GVWA 4R7MA 2XD7A 4IQYA 3GQOA 3IJ3A 4UMLA 5FSZA 4ABKA 3EW5A 5FSUA 3H8FA 3KR4A 4GUAA 3V2BA 3KZWA 1BPNA 4ZI6A 5E3BA 2BFRA 3EWPA 3JZTA 3V45A 4D86A 2ACFA 1TXZA 3GPQA 4K3NA 2X47A 5HOLA 4X2TA 1HJZA 2LGRA 3ETIA 1YD9A 1GYTA
chains in the Genus database with same CATH superfamily
5D8NA 4ZY1A 5CBMA 1BLLE 3PEIA 4ZX8A 2VRIA 4JVVA 2EEEA 2AFCA 4JLLA 4ZY0A 5CMSA 3VFQA 3IIDA 1TY8A 3SIJA 2J9AA 3JRUA 1LANA 5CB5A 3SIIA 2EWBA 3EWQA 4ZYQA 3GPGA 3EJFA 2JZFA 4ZX9A 4ESSA 3KR5A 5DUSA 4ETJA 3KQXA 3SIHA 1LAPA 3EWRA 2FXKA 4J5SA 4KYBA 4ZY2A 3KQZA 3H8EA 1ZR5A 3EWOA 3Q6ZA 1BPMA 2DX6A 3SIGA 2KQVA 2FAVA 3H8GA 4J5RA 4KSIA 5CB3A 3GPOA 2FG1A 2RNKA 2JZEA 2L8RA 4JCAA 4R6TA 1ZR3A 4JGKA 5HIHA 4ETKA 4J4ZA 1NJRA 5FSYA 3T8WA 4TU0A 2W2GA 5FSVA 4GVVA 1LAMA 5AILA 4ABLA 2BFQA 3EJGA 4R76A 4K0CA 4J5QA 3EKEA 5FSXA 3Q71A 2JZDA 1SPVA 1LCPA 3IIFA 1VHUA 3GQEA 4GVWA 4R7MA 2XD7A 4IQYA 3GQOA 3IJ3A 2WCTA 4UMLA 5FSZA 4ABKA 3EW5A 5FSUA 3H8FA 3KR4A 4GUAA 3V2BA 3KZWA 1BPNA 4ZI6A 5E3BA 2BFRA 3EWPA 3JZTA 3V45A 4D86A 2ACFA 1TXZA 3GPQA 4K3NA 2X47A 5HOLA 4X2TA 1HJZA 2LGRA 3ETIA 1YD9A 1GYTA
chains in the Genus database with same CATH topology
5D8NA 4ZY1A 5CBMA 1BLLE 3PEIA 4ZX8A 2VRIA 4JVVA 2EEEA 2AFCA 4JLLA 4ZY0A 5CMSA 3VFQA 3IIDA 1TY8A 3SIJA 2J9AA 3JRUA 1LANA 5CB5A 3SIIA 2EWBA 3EWQA 4ZYQA 3GPGA 3EJFA 4ZX9A 4ESSA 3KR5A 5DUSA 4ETJA 3KQXA 3SIHA 1LAPA 3EWRA 2FXKA 4J5SA 4KYBA 4ZY2A 3KQZA 3H8EA 1ZR5A 3EWOA 3Q6ZA 1BPMA 2DX6A 3SIGA 2FAVA 3H8GA 4J5RA 4KSIA 5CB3A 3GPOA 2FG1A 2L8RA 4JCAA 4R6TA 1ZR3A 4JGKA 5HIHA 4ETKA 4J4ZA 1NJRA 5FSYA 3T8WA 4TU0A 5FSVA 4GVVA 1LAMA 5AILA 4ABLA 2BFQA 3EJGA 4R76A 4K0CA 4J5QA 3EKEA 5FSXA 3Q71A 1SPVA 1LCPA 3IIFA 1VHUA 3GQEA 4GVWA 4R7MA 2XD7A 4IQYA 3GQOA 3IJ3A 4UMLA 5FSZA 4ABKA 3EW5A 5FSUA 3H8FA 3KR4A 4GUAA 3V2BA 3KZWA 1BPNA 4ZI6A 5E3BA 2BFRA 3EWPA 3JZTA 3V45A 4D86A 2ACFA 1TXZA 3GPQA 4K3NA 2X47A 5HOLA 4X2TA 1HJZA 2LGRA 3ETIA 1YD9A 1GYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D8N A;  4ZY1 A;  5CBM A;  1BLL E;  3PEI A;  4ZX8 A;  2VRI A;  4JVV A;  2EEE A;  2AFC A;  4JLL A;  4ZY0 A;  5CMS A;  3VFQ A;  3IID A;  1TY8 A;  3SIJ A;  2J9A A;  3JRU A;  1LAN A;  5CB5 A;  3SII A;  2EWB A;  3EWQ A;  4ZYQ A;  3GPG A;  3EJF A;  4ZX9 A;  4ESS A;  3KR5 A;  5DUS A;  4ETJ A;  3KQX A;  3SIH A;  1LAP A;  3EWR A;  2FXK A;  4J5S A;  4KYB A;  4ZY2 A;  3KQZ A;  3H8E A;  1ZR5 A;  3EWO A;  3Q6Z A;  1BPM A;  2DX6 A;  3SIG A;  2FAV A;  3H8G A;  4J5R A;  4KSI A;  5CB3 A;  3GPO A;  2FG1 A;  2L8R A;  4JCA A;  4R6T A;  1ZR3 A;  4JGK A;  5HIH A;  4ETK A;  4J4Z A;  1NJR A;  5FSY A;  3T8W A;  4TU0 A;  5FSV A;  4GVV A;  1LAM A;  5AIL A;  4ABL A;  2BFQ A;  3EJG A;  4R76 A;  4K0C A;  4J5Q A;  3EKE A;  5FSX A;  3Q71 A;  1SPV A;  1LCP A;  3IIF A;  1VHU A;  3GQE A;  4GVW A;  4R7M A;  2XD7 A;  4IQY A;  3GQO A;  3IJ3 A;  4UML A;  5FSZ A;  4ABK A;  3EW5 A;  5FSU A;  3H8F A;  3KR4 A;  4GUA A;  3V2B A;  3KZW A;  1BPN A;  4ZI6 A;  5E3B A;  2BFR A;  3EWP A;  3JZT A;  3V45 A;  4D86 A;  2ACF A;  1TXZ A;  3GPQ A;  4K3N A;  2X47 A;  5HOL A;  4X2T A;  1HJZ A;  2LGR A;  3ETI A;  1YD9 A;  1GYT A; 
#chains in the Genus database with same CATH topology
 5D8N A;  4ZY1 A;  5CBM A;  1BLL E;  3PEI A;  4ZX8 A;  2VRI A;  4JVV A;  2EEE A;  2AFC A;  4JLL A;  4ZY0 A;  5CMS A;  3VFQ A;  3IID A;  1TY8 A;  3SIJ A;  2J9A A;  3JRU A;  1LAN A;  5CB5 A;  3SII A;  2EWB A;  3EWQ A;  4ZYQ A;  3GPG A;  3EJF A;  2JZF A;  4ZX9 A;  4ESS A;  3KR5 A;  5DUS A;  4ETJ A;  3KQX A;  3SIH A;  1LAP A;  3EWR A;  2FXK A;  4J5S A;  4KYB A;  4ZY2 A;  3KQZ A;  3H8E A;  1ZR5 A;  3EWO A;  3Q6Z A;  1BPM A;  2DX6 A;  3SIG A;  2KQV A;  2FAV A;  3H8G A;  4J5R A;  4KSI A;  5CB3 A;  3GPO A;  2FG1 A;  2RNK A;  2JZE A;  2L8R A;  4JCA A;  4R6T A;  1ZR3 A;  4JGK A;  5HIH A;  4ETK A;  4J4Z A;  1NJR A;  5FSY A;  3T8W A;  4TU0 A;  2W2G A;  5FSV A;  4GVV A;  1LAM A;  5AIL A;  4ABL A;  2BFQ A;  3EJG A;  4R76 A;  4K0C A;  4J5Q A;  3EKE A;  5FSX A;  3Q71 A;  2JZD A;  1SPV A;  1LCP A;  3IIF A;  1VHU A;  3GQE A;  4GVW A;  4R7M A;  2XD7 A;  4IQY A;  3GQO A;  3IJ3 A;  2WCT A;  4UML A;  5FSZ A;  4ABK A;  3EW5 A;  5FSU A;  3H8F A;  3KR4 A;  4GUA A;  3V2B A;  3KZW A;  1BPN A;  4ZI6 A;  5E3B A;  2BFR A;  3EWP A;  3JZT A;  3V45 A;  4D86 A;  2ACF A;  1TXZ A;  3GPQ A;  4K3N A;  2X47 A;  5HOL A;  4X2T A;  1HJZ A;  2LGR A;  3ETI A;  1YD9 A;  1GYT A; 
#chains in the Genus database with same CATH homology
 5D8N A;  4ZY1 A;  5CBM A;  1BLL E;  3PEI A;  4ZX8 A;  2VRI A;  4JVV A;  2EEE A;  2AFC A;  4JLL A;  4ZY0 A;  5CMS A;  3VFQ A;  3IID A;  1TY8 A;  3SIJ A;  2J9A A;  3JRU A;  1LAN A;  5CB5 A;  3SII A;  2EWB A;  3EWQ A;  4ZYQ A;  3GPG A;  3EJF A;  4ZX9 A;  4ESS A;  3KR5 A;  5DUS A;  4ETJ A;  3KQX A;  3SIH A;  1LAP A;  3EWR A;  2FXK A;  4J5S A;  4KYB A;  4ZY2 A;  3KQZ A;  3H8E A;  1ZR5 A;  3EWO A;  3Q6Z A;  1BPM A;  2DX6 A;  3SIG A;  2FAV A;  3H8G A;  4J5R A;  4KSI A;  5CB3 A;  3GPO A;  2FG1 A;  2L8R A;  4JCA A;  4R6T A;  1ZR3 A;  4JGK A;  5HIH A;  4ETK A;  4J4Z A;  1NJR A;  5FSY A;  3T8W A;  4TU0 A;  5FSV A;  4GVV A;  1LAM A;  5AIL A;  4ABL A;  2BFQ A;  3EJG A;  4R76 A;  4K0C A;  4J5Q A;  3EKE A;  5FSX A;  3Q71 A;  1SPV A;  1LCP A;  3IIF A;  1VHU A;  3GQE A;  4GVW A;  4R7M A;  2XD7 A;  4IQY A;  3GQO A;  3IJ3 A;  4UML A;  5FSZ A;  4ABK A;  3EW5 A;  5FSU A;  3H8F A;  3KR4 A;  4GUA A;  3V2B A;  3KZW A;  1BPN A;  4ZI6 A;  5E3B A;  2BFR A;  3EWP A;  3JZT A;  3V45 A;  4D86 A;  2ACF A;  1TXZ A;  3GPQ A;  4K3N A;  2X47 A;  5HOL A;  4X2T A;  1HJZ A;  2LGR A;  3ETI A;  1YD9 A;  1GYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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