1VHUA

Crystal structure of a putative phosphoesterase
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
192
structure length
192
Chain Sequence
MEVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein AF1521
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Archaeoglobus fulgidus
total genus 70
structure length 192
sequence length 192
ec nomenclature
pdb deposition date 2003-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 1vhuA00
1BPMA 4ZX8A 1LAMA 5E3BA 3GPGA 4ESSA 3SIGA 4R76A 3PEIA 3EJGA 4JVVA 5AILA 4R7MA 3EWRA 1TY8A 1YD9A 3IIDA 3KR5A 5CBMA 1TXZA 1BPNA 1ZR5A 2DX6A 4KYBA 5FSVA 5CB3A 1LANA 4IQYA 4D86A 4X2TA 2AFCA 3IJ3A 5CMSA 3VFQA 5HIHA 4UMLA 2VRIA 2FAVA 3Q6ZA 3EJFA 3KZWA 3IIFA 4R6TA 4ABKA 4ZY1A 4JCAA 3GPQA 5FSZA 2BFQA 3EKEA 5DUSA 4ZY2A 1BLLE 3V45A 1NJRA 3GPOA 4K3NA 4J5QA 1LCPA 4ZY0A 2L8RA 4KSIA 4ZYQA 4J5SA 3JZTA 2EWBA 3EW5A 5D8NA 3EWQA 4JGKA 2FG1A 1HJZA 2EEEA 4J4ZA 3GQEA 3H8GA 2ACFA 2LGRA 3H8FA 4ZX9A 1GYTA 4GVVA 2BFRA 1VHUA 3ETIA 2X47A 3KQXA 5CB5A 2FXKA 3GQOA 4GVWA 4GUAA 5FSXA 4JLLA 3JRUA 3T8WA 3EWPA 4ETJA 1ZR3A 4TU0A 3KQZA 4ZI6A 1LAPA 3H8EA 3Q71A 1SPVA 3SIHA 2XD7A 4ABLA 5FSUA 4J5RA 5FSYA 3KR4A 5HOLA 3EWOA 4K0CA 3SIIA 3V2BA 4ETKA 3SIJA 2J9AA
chains in the Genus database with same CATH superfamily
1BPMA 4ZX8A 1LAMA 5E3BA 3GPGA 4ESSA 3SIGA 4R76A 3PEIA 3EJGA 4JVVA 5AILA 4R7MA 3EWRA 1TY8A 1YD9A 3IIDA 3KR5A 5CBMA 1TXZA 1BPNA 2JZEA 1ZR5A 2DX6A 4KYBA 5FSVA 5CB3A 1LANA 4IQYA 4D86A 4X2TA 2AFCA 3IJ3A 5CMSA 3VFQA 5HIHA 4UMLA 2VRIA 2FAVA 3Q6ZA 3EJFA 3KZWA 3IIFA 4R6TA 4ABKA 4ZY1A 4JCAA 3GPQA 5FSZA 2BFQA 3EKEA 5DUSA 4ZY2A 1BLLE 3V45A 1NJRA 3GPOA 4K3NA 4J5QA 1LCPA 4ZY0A 2L8RA 2RNKA 4KSIA 2JZFA 4ZYQA 4J5SA 3JZTA 2EWBA 3EW5A 5D8NA 3EWQA 4JGKA 2FG1A 1HJZA 2EEEA 4J4ZA 3GQEA 3H8GA 2ACFA 2LGRA 3H8FA 4ZX9A 1GYTA 4GVVA 2BFRA 1VHUA 3ETIA 2X47A 3KQXA 5CB5A 2FXKA 3GQOA 2W2GA 4GVWA 4GUAA 5FSXA 4JLLA 3JRUA 3T8WA 3EWPA 4ETJA 1ZR3A 2KQVA 2WCTA 3KQZA 4ZI6A 4TU0A 1LAPA 3H8EA 3Q71A 1SPVA 3SIHA 2XD7A 4ABLA 5FSUA 4J5RA 5FSYA 3KR4A 5HOLA 3EWOA 4K0CA 3SIIA 3V2BA 4ETKA 3SIJA 2JZDA 2J9AA
chains in the Genus database with same CATH topology
1BPMA 4ZX8A 1LAMA 5E3BA 3GPGA 4ESSA 3SIGA 4R76A 3PEIA 3EJGA 4JVVA 5AILA 4R7MA 3EWRA 1TY8A 1YD9A 3IIDA 3KR5A 5CBMA 1TXZA 1BPNA 1ZR5A 2DX6A 4KYBA 5FSVA 5CB3A 1LANA 4IQYA 4D86A 4X2TA 2AFCA 3IJ3A 5CMSA 3VFQA 5HIHA 4UMLA 2VRIA 2FAVA 3Q6ZA 3EJFA 3KZWA 3IIFA 4R6TA 4ABKA 4ZY1A 4JCAA 3GPQA 5FSZA 2BFQA 3EKEA 5DUSA 4ZY2A 1BLLE 3V45A 1NJRA 3GPOA 4K3NA 4J5QA 1LCPA 4ZY0A 2L8RA 4KSIA 4ZYQA 4J5SA 3JZTA 2EWBA 3EW5A 5D8NA 3EWQA 4JGKA 2FG1A 1HJZA 2EEEA 4J4ZA 3GQEA 3H8GA 2ACFA 2LGRA 3H8FA 4ZX9A 1GYTA 4GVVA 2BFRA 1VHUA 3ETIA 2X47A 3KQXA 5CB5A 2FXKA 3GQOA 4GVWA 4GUAA 5FSXA 4JLLA 3JRUA 3T8WA 3EWPA 4ETJA 1ZR3A 4TU0A 3KQZA 4ZI6A 1LAPA 3H8EA 3Q71A 1SPVA 3SIHA 2XD7A 4ABLA 5FSUA 4J5RA 5FSYA 3KR4A 5HOLA 3EWOA 4K0CA 3SIIA 3V2BA 4ETKA 3SIJA 2J9AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BPM A;  4ZX8 A;  1LAM A;  5E3B A;  3GPG A;  4ESS A;  3SIG A;  4R76 A;  3PEI A;  3EJG A;  4JVV A;  5AIL A;  4R7M A;  3EWR A;  1TY8 A;  1YD9 A;  3IID A;  3KR5 A;  5CBM A;  1TXZ A;  1BPN A;  1ZR5 A;  2DX6 A;  4KYB A;  5FSV A;  5CB3 A;  1LAN A;  4IQY A;  4D86 A;  4X2T A;  2AFC A;  3IJ3 A;  5CMS A;  3VFQ A;  5HIH A;  4UML A;  2VRI A;  2FAV A;  3Q6Z A;  3EJF A;  3KZW A;  3IIF A;  4R6T A;  4ABK A;  4ZY1 A;  4JCA A;  3GPQ A;  5FSZ A;  2BFQ A;  3EKE A;  5DUS A;  4ZY2 A;  1BLL E;  3V45 A;  1NJR A;  3GPO A;  4K3N A;  4J5Q A;  1LCP A;  4ZY0 A;  2L8R A;  4KSI A;  4ZYQ A;  4J5S A;  3JZT A;  2EWB A;  3EW5 A;  5D8N A;  3EWQ A;  4JGK A;  2FG1 A;  1HJZ A;  2EEE A;  4J4Z A;  3GQE A;  3H8G A;  2ACF A;  2LGR A;  3H8F A;  4ZX9 A;  1GYT A;  4GVV A;  2BFR A;  1VHU A;  3ETI A;  2X47 A;  3KQX A;  5CB5 A;  2FXK A;  3GQO A;  4GVW A;  4GUA A;  5FSX A;  4JLL A;  3JRU A;  3T8W A;  3EWP A;  4ETJ A;  1ZR3 A;  4TU0 A;  3KQZ A;  4ZI6 A;  1LAP A;  3H8E A;  3Q71 A;  1SPV A;  3SIH A;  2XD7 A;  4ABL A;  5FSU A;  4J5R A;  5FSY A;  3KR4 A;  5HOL A;  3EWO A;  4K0C A;  3SII A;  3V2B A;  4ETK A;  3SIJ A;  2J9A A; 
#chains in the Genus database with same CATH topology
 1BPM A;  4ZX8 A;  1LAM A;  5E3B A;  3GPG A;  4ESS A;  3SIG A;  4R76 A;  3PEI A;  3EJG A;  4JVV A;  5AIL A;  4R7M A;  3EWR A;  1TY8 A;  1YD9 A;  3IID A;  3KR5 A;  5CBM A;  1TXZ A;  1BPN A;  2JZE A;  1ZR5 A;  2DX6 A;  4KYB A;  5FSV A;  5CB3 A;  1LAN A;  4IQY A;  4D86 A;  4X2T A;  2AFC A;  3IJ3 A;  5CMS A;  3VFQ A;  5HIH A;  4UML A;  2VRI A;  2FAV A;  3Q6Z A;  3EJF A;  3KZW A;  3IIF A;  4R6T A;  4ABK A;  4ZY1 A;  4JCA A;  3GPQ A;  5FSZ A;  2BFQ A;  3EKE A;  5DUS A;  4ZY2 A;  1BLL E;  3V45 A;  1NJR A;  3GPO A;  4K3N A;  4J5Q A;  1LCP A;  4ZY0 A;  2L8R A;  2RNK A;  4KSI A;  2JZF A;  4ZYQ A;  4J5S A;  3JZT A;  2EWB A;  3EW5 A;  5D8N A;  3EWQ A;  4JGK A;  2FG1 A;  1HJZ A;  2EEE A;  4J4Z A;  3GQE A;  3H8G A;  2ACF A;  2LGR A;  3H8F A;  4ZX9 A;  1GYT A;  4GVV A;  2BFR A;  1VHU A;  3ETI A;  2X47 A;  3KQX A;  5CB5 A;  2FXK A;  3GQO A;  2W2G A;  4GVW A;  4GUA A;  5FSX A;  4JLL A;  3JRU A;  3T8W A;  3EWP A;  4ETJ A;  1ZR3 A;  2KQV A;  2WCT A;  3KQZ A;  4ZI6 A;  4TU0 A;  1LAP A;  3H8E A;  3Q71 A;  1SPV A;  3SIH A;  2XD7 A;  4ABL A;  5FSU A;  4J5R A;  5FSY A;  3KR4 A;  5HOL A;  3EWO A;  4K0C A;  3SII A;  3V2B A;  4ETK A;  3SIJ A;  2JZD A;  2J9A A; 
#chains in the Genus database with same CATH homology
 1BPM A;  4ZX8 A;  1LAM A;  5E3B A;  3GPG A;  4ESS A;  3SIG A;  4R76 A;  3PEI A;  3EJG A;  4JVV A;  5AIL A;  4R7M A;  3EWR A;  1TY8 A;  1YD9 A;  3IID A;  3KR5 A;  5CBM A;  1TXZ A;  1BPN A;  1ZR5 A;  2DX6 A;  4KYB A;  5FSV A;  5CB3 A;  1LAN A;  4IQY A;  4D86 A;  4X2T A;  2AFC A;  3IJ3 A;  5CMS A;  3VFQ A;  5HIH A;  4UML A;  2VRI A;  2FAV A;  3Q6Z A;  3EJF A;  3KZW A;  3IIF A;  4R6T A;  4ABK A;  4ZY1 A;  4JCA A;  3GPQ A;  5FSZ A;  2BFQ A;  3EKE A;  5DUS A;  4ZY2 A;  1BLL E;  3V45 A;  1NJR A;  3GPO A;  4K3N A;  4J5Q A;  1LCP A;  4ZY0 A;  2L8R A;  4KSI A;  4ZYQ A;  4J5S A;  3JZT A;  2EWB A;  3EW5 A;  5D8N A;  3EWQ A;  4JGK A;  2FG1 A;  1HJZ A;  2EEE A;  4J4Z A;  3GQE A;  3H8G A;  2ACF A;  2LGR A;  3H8F A;  4ZX9 A;  1GYT A;  4GVV A;  2BFR A;  1VHU A;  3ETI A;  2X47 A;  3KQX A;  5CB5 A;  2FXK A;  3GQO A;  4GVW A;  4GUA A;  5FSX A;  4JLL A;  3JRU A;  3T8W A;  3EWP A;  4ETJ A;  1ZR3 A;  4TU0 A;  3KQZ A;  4ZI6 A;  1LAP A;  3H8E A;  3Q71 A;  1SPV A;  3SIH A;  2XD7 A;  4ABL A;  5FSU A;  4J5R A;  5FSY A;  3KR4 A;  5HOL A;  3EWO A;  4K0C A;  3SII A;  3V2B A;  4ETK A;  3SIJ A;  2J9A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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