1VKEA

Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (tm1620) from thermotoga maritima at 1.56 a resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
118
structure length
117
Chain Sequence
KKFVEARRELNEKVSRGTLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVGFLEELREMEKNGETISL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords carboxymuconolactone decarboxylase family protein
publication title Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (TM1620) from Thermotoga maritima at 1.56 A resolution
rcsb
source organism Thermotoga maritima
total genus 47
structure length 117
sequence length 118
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.-.-:
pdb deposition date 2004-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1vkeA00
2PRRA 1GU9A 2QEUA 5DIKA 1ME5A 1LW1A 3LVYA 2PFXA 2OUWA 3BEYA 1VKEA 5DIPA 3D7IA 1P8CA 1KNCA 2O4DA 2IJCA 4G9QA 2Q0TA 2GMYA 2OYOA 2AF7A 3C1LA 2CWQA
chains in the Genus database with same CATH superfamily
2PRRA 3AA1A 1GU9A 2QEUA 2ES9A 3LK3A 5DIKA 1ME5A 3LK2A 1LW1A 3LVYA 3AAAA 2PFXA 3AAEA 5ADXK 2OUWA 3AA6A 3LK41 3BEYA 1VKEA 4AKRA 5DIPA 3D7IA 2JN8A 5AFUK 1P8CA 2KXPA 1KNCA 2O4DA 2IJCA 1IZNA 4G9QA 2Q0TA 2GMYA 3AA7A 2OYOA 2AF7A 3C1LA 3AA0A 2KZ7A 2CWQA
chains in the Genus database with same CATH topology
2PRRA 3AA1A 1GU9A 2QEUA 2ES9A 3LK3A 5DIKA 1ME5A 3LK2A 1LW1A 3LVYA 3AAAA 2PFXA 3AAEA 5ADXK 2OUWA 3AA6A 3LK41 3BEYA 1VKEA 4AKRA 5DIPA 3D7IA 2JN8A 5AFUK 1P8CA 2KXPA 1KNCA 2O4DA 2IJCA 1IZNA 4G9QA 2Q0TA 2GMYA 3AA7A 2OYOA 2AF7A 3C1LA 3AA0A 2KZ7A 2CWQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRR A;  1GU9 A;  2QEU A;  5DIK A;  1ME5 A;  1LW1 A;  3LVY A;  2PFX A;  2OUW A;  3BEY A;  1VKE A;  5DIP A;  3D7I A;  1P8C A;  1KNC A;  2O4D A;  2IJC A;  4G9Q A;  2Q0T A;  2GMY A;  2OYO A;  2AF7 A;  3C1L A;  2CWQ A; 
#chains in the Genus database with same CATH topology
 2PRR A;  3AA1 A;  1GU9 A;  2QEU A;  2ES9 A;  3LK3 A;  5DIK A;  1ME5 A;  3LK2 A;  1LW1 A;  3LVY A;  3AAA A;  2PFX A;  3AAE A;  5ADX K;  2OUW A;  3AA6 A;  3LK4 1;  3BEY A;  1VKE A;  4AKR A;  5DIP A;  3D7I A;  2JN8 A;  5AFU K;  1P8C A;  2KXP A;  1KNC A;  2O4D A;  2IJC A;  1IZN A;  4G9Q A;  2Q0T A;  2GMY A;  3AA7 A;  2OYO A;  2AF7 A;  3C1L A;  3AA0 A;  2KZ7 A;  2CWQ A; 
#chains in the Genus database with same CATH homology
 2PRR A;  3AA1 A;  1GU9 A;  2QEU A;  2ES9 A;  3LK3 A;  5DIK A;  1ME5 A;  3LK2 A;  1LW1 A;  3LVY A;  3AAA A;  2PFX A;  3AAE A;  5ADX K;  2OUW A;  3AA6 A;  3LK4 1;  3BEY A;  1VKE A;  4AKR A;  5DIP A;  3D7I A;  2JN8 A;  5AFU K;  1P8C A;  2KXP A;  1KNC A;  2O4D A;  2IJC A;  1IZN A;  4G9Q A;  2Q0T A;  2GMY A;  3AA7 A;  2OYO A;  2AF7 A;  3C1L A;  3AA0 A;  2KZ7 A;  2CWQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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