1VKEA

Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (tm1620) from thermotoga maritima at 1.56 a resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
118
structure length
117
Chain Sequence
KKFVEARRELNEKVSRGTLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVGFLEELREMEKNGETISL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords carboxymuconolactone decarboxylase family protein
publication title Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (TM1620) from Thermotoga maritima at 1.56 A resolution
rcsb
source organism Thermotoga maritima
total genus 47
structure length 117
sequence length 118
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.-.-:
pdb deposition date 2004-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1vkeA00
1KNCA 1GU9A 2AF7A 2QEUA 3BEYA 2PFXA 4G9QA 1LW1A 2OUWA 3C1LA 3D7IA 2O4DA 2Q0TA 5DIKA 2CWQA 3LVYA 1ME5A 2PRRA 1P8CA 2IJCA 2OYOA 1VKEA 5DIPA 2GMYA
chains in the Genus database with same CATH superfamily
1KNCA 1GU9A 2AF7A 2QEUA 3AA7A 3BEYA 3LK3A 3LK2A 3AAAA 3AA1A 2PFXA 4G9QA 1LW1A 2OUWA 3AA0A 3AAEA 3C1LA 3D7IA 2O4DA 2Q0TA 5DIKA 3LK41 1IZNA 2CWQA 3LVYA 1ME5A 2PRRA 5AFUK 4AKRA 1P8CA 2IJCA 2KZ7A 2OYOA 1VKEA 2KXPA 5DIPA 3AA6A 5ADXK 2ES9A 2GMYA 2JN8A
chains in the Genus database with same CATH topology
1KNCA 1GU9A 2AF7A 2QEUA 3AA7A 3BEYA 3LK3A 3LK2A 3AAAA 3AA1A 2PFXA 4G9QA 1LW1A 2OUWA 3AA0A 3AAEA 3C1LA 3D7IA 2O4DA 2Q0TA 5DIKA 3LK41 1IZNA 2CWQA 3LVYA 1ME5A 2PRRA 5AFUK 4AKRA 1P8CA 2IJCA 2KZ7A 2OYOA 1VKEA 2KXPA 5DIPA 3AA6A 5ADXK 2ES9A 2GMYA 2JN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KNC A;  1GU9 A;  2AF7 A;  2QEU A;  3BEY A;  2PFX A;  4G9Q A;  1LW1 A;  2OUW A;  3C1L A;  3D7I A;  2O4D A;  2Q0T A;  5DIK A;  2CWQ A;  3LVY A;  1ME5 A;  2PRR A;  1P8C A;  2IJC A;  2OYO A;  1VKE A;  5DIP A;  2GMY A; 
#chains in the Genus database with same CATH topology
 1KNC A;  1GU9 A;  2AF7 A;  2QEU A;  3AA7 A;  3BEY A;  3LK3 A;  3LK2 A;  3AAA A;  3AA1 A;  2PFX A;  4G9Q A;  1LW1 A;  2OUW A;  3AA0 A;  3AAE A;  3C1L A;  3D7I A;  2O4D A;  2Q0T A;  5DIK A;  3LK4 1;  1IZN A;  2CWQ A;  3LVY A;  1ME5 A;  2PRR A;  5AFU K;  4AKR A;  1P8C A;  2IJC A;  2KZ7 A;  2OYO A;  1VKE A;  2KXP A;  5DIP A;  3AA6 A;  5ADX K;  2ES9 A;  2GMY A;  2JN8 A; 
#chains in the Genus database with same CATH homology
 1KNC A;  1GU9 A;  2AF7 A;  2QEU A;  3AA7 A;  3BEY A;  3LK3 A;  3LK2 A;  3AAA A;  3AA1 A;  2PFX A;  4G9Q A;  1LW1 A;  2OUW A;  3AA0 A;  3AAE A;  3C1L A;  3D7I A;  2O4D A;  2Q0T A;  5DIK A;  3LK4 1;  1IZN A;  2CWQ A;  3LVY A;  1ME5 A;  2PRR A;  5AFU K;  4AKR A;  1P8C A;  2IJC A;  2KZ7 A;  2OYO A;  1VKE A;  2KXP A;  5DIP A;  3AA6 A;  5ADX K;  2ES9 A;  2GMY A;  2JN8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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