1VKIA

Crystal structure of a putative oligo-nucleotide binding protein (atu3699, agr_l_2275) from agrobacterium tumefaciens str. c58 at 1.60 a resolution
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
165
structure length
165
Chain Sequence
SRKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKVSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords HYPOTHETICAL PROTEIN ATU3699
publication title Crystal structure of hypothetical protein (ATU3699) from Agrobacterium tumefaciens at 1.60 A resolution
rcsb
source organism Agrobacterium tumefaciens str. c58
total genus 51
structure length 165
sequence length 165
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04073 tRNA_edit Aminoacyl-tRNA editing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.960.10 Alpha Beta Alpha-Beta Complex YbaK protein YbaK/aminoacyl-tRNA synthetase-associated domain 1vkiA00
2J3MA 1DBUA 2CX5A 1VJFA 2Z0KA 1VKIA 1WDVA 2J3LA 2Z0XA 3MEMA 3RI0A 2DXAA 3RIJA 1DBXA 3OP6A
chains in the Genus database with same CATH superfamily
2J3MA 1DBUA 2CX5A 1VJFA 2Z0KA 1VKIA 1WDVA 2J3LA 2Z0XA 3MEMA 3RI0A 2DXAA 3RIJA 1DBXA 3OP6A
chains in the Genus database with same CATH topology
2J3MA 1DBUA 2CX5A 1VJFA 2Z0KA 1VKIA 1WDVA 2J3LA 2Z0XA 3MEMA 3RI0A 2DXAA 3RIJA 1DBXA 3OP6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J3M A;  1DBU A;  2CX5 A;  1VJF A;  2Z0K A;  1VKI A;  1WDV A;  2J3L A;  2Z0X A;  3MEM A;  3RI0 A;  2DXA A;  3RIJ A;  1DBX A;  3OP6 A; 
#chains in the Genus database with same CATH topology
 2J3M A;  1DBU A;  2CX5 A;  1VJF A;  2Z0K A;  1VKI A;  1WDV A;  2J3L A;  2Z0X A;  3MEM A;  3RI0 A;  2DXA A;  3RIJ A;  1DBX A;  3OP6 A; 
#chains in the Genus database with same CATH homology
 2J3M A;  1DBU A;  2CX5 A;  1VJF A;  2Z0K A;  1VKI A;  1WDV A;  2J3L A;  2Z0X A;  3MEM A;  3RI0 A;  2DXA A;  3RIJ A;  1DBX A;  3OP6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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