1VKWA

Crystal structure of a putative nitroreductase (tm1586) from thermotoga maritima msb8 at 2.00 a resolution
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
217
structure length
217
Chain Sequence
GSDKIHHHHHHMNIFEAIENRHSVRDFLERKMPERVKDDIENLLVKFITKKLDWKINLSSFPSYIYAKAEKHFDELVEYGFQGEQIVLFLTAQGFGTCWMARSPHPDVPYIIVFGYPRTRNFTRKRRPITSFLENDLEELPPEIVKIVEMTILAPSALNRQPWKIKYTGGELCISSERPVDLGIALSHAYLTAREIFKREPVIQKRGEDTYCLILNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords putative nitroreductase
publication title Crystal structure of Putative Nitroreductase (TM1586) from Thermotoga maritima at 2.00 A resolution
rcsb
source organism Thermotoga maritima
total genus 60
structure length 217
sequence length 217
ec nomenclature
pdb deposition date 2004-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14512 TM1586_NiRdase Putative TM nitroreductase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1vkwA01
3.40.109.30 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase putative nitroreductase (tm1586), domain 2 1vkwA02
1DS7A 4QLYA 3K6HA 5HEIA 1KQCA 4EO3A 1KQBA 3KOQA 1V5ZA 3E39A 2B67A 5HDJA 5J6CA 1YLRA 3M5KA 2ISKA 3N2SA 3GFAA 1ICUA 1KQDA 1OOQA 3GR3A 3X21A 1YWQA 2H0UA 1ICVA 1OO6A 3KWKA 4QLXA 3EK3A 2YMVA 3G14A 1NECA 1V5YA 1IDTA 3BM2A 4TTCA 4XOOA 3TO0A 2WZWA 2IFAA 2I7HA 3GE5A 2BKJA 3GE6A 3GAGA 4TTBA 2FREA 2HAYA 3EOFA 3X22A 1F5VA 4BN8A 4XOMA 4XOQA 5KO7A 1BKJA 1ICRA 4G8SA 3BM1A 2WZVA 4BN7A 2ISJA 3OF4A 1ZCHA 3GFDA 1OONA 3E10A 5KRDA 3TNZA 4BN6A 3HJ9A 1NOXA 3EO8A 3H4OA 3HOIA 3BEMA 4BN9A 3GBHA 4BNBA 3GB5A 3PXVA 4URPA 3GH8A 4DN2A 1OO5A 1VFRA 1VKWA 2R01A 3EO7A 5KO8A 3QDLA 1YLUA 2ISLA 3HZNA 2WQFA 1YKIA
chains in the Genus database with same CATH superfamily
1DS7A 4QLYA 3K6HA 5HEIA 1KQCA 4EO3A 1KQBA 3KOQA 1V5ZA 3E39A 2B67A 5HDJA 5J6CA 1YLRA 3M5KA 2ISKA 3N2SA 3GFAA 1ICUA 1KQDA 1OOQA 3GR3A 3X21A 1YWQA 2H0UA 1ICVA 1OO6A 3KWKA 4QLXA 3EK3A 2YMVA 3G14A 1NECA 1V5YA 1IDTA 3BM2A 4TTCA 4XOOA 3TO0A 2WZWA 2IFAA 2I7HA 3GE5A 2BKJA 3GE6A 3GAGA 4TTBA 2FREA 2HAYA 3EOFA 3X22A 1F5VA 4BN8A 1J6RA 4XOMA 4XOQA 5KO7A 1BKJA 1ICRA 4G8SA 3BM1A 2WZVA 4BN7A 2ISJA 3OF4A 1ZCHA 3GFDA 1OONA 3E10A 5KRDA 3TNZA 4BN6A 3HJ9A 1NOXA 3EO8A 3H4OA 3HOIA 3BEMA 4BN9A 3GBHA 4BNBA 3GB5A 3PXVA 4URPA 3GH8A 4DN2A 1OO5A 1VFRA 1VKWA 2R01A 3EO7A 5KO8A 3QDLA 1YLUA 2ISLA 3HZNA 2WQFA 1YKIA
chains in the Genus database with same CATH topology
1DS7A 4QLYA 3K6HA 5HEIA 1KQCA 4EO3A 1KQBA 3KOQA 1V5ZA 3E39A 2B67A 5HDJA 5J6CA 1YLRA 3M5KA 2ISKA 3N2SA 3GFAA 1ICUA 1KQDA 1OOQA 3GR3A 3X21A 1YWQA 2H0UA 1ICVA 1OO6A 3KWKA 4QLXA 3EK3A 2YMVA 3G14A 1NECA 1V5YA 1IDTA 3BM2A 4TTCA 4XOOA 3TO0A 2WZWA 2IFAA 2I7HA 3GE5A 2BKJA 3GE6A 3GAGA 4TTBA 2FREA 2HAYA 3EOFA 3X22A 1F5VA 4BN8A 1J6RA 4XOMA 4XOQA 5KO7A 1BKJA 1ICRA 4G8SA 3BM1A 2WZVA 4BN7A 2ISJA 3OF4A 1ZCHA 3GFDA 1OONA 3E10A 5KRDA 3TNZA 4BN6A 3HJ9A 1NOXA 3EO8A 3H4OA 3HOIA 3BEMA 4BN9A 3GBHA 4BNBA 3GB5A 3PXVA 4URPA 3GH8A 4DN2A 1OO5A 1VFRA 1VKWA 2R01A 3EO7A 5KO8A 3QDLA 1YLUA 2ISLA 3HZNA 2WQFA 1YKIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DS7 A;  4QLY A;  3K6H A;  5HEI A;  1KQC A;  4EO3 A;  1KQB A;  3KOQ A;  1V5Z A;  3E39 A;  2B67 A;  5HDJ A;  5J6C A;  1YLR A;  3M5K A;  2ISK A;  3N2S A;  3GFA A;  1ICU A;  1KQD A;  1OOQ A;  3GR3 A;  3X21 A;  1YWQ A;  2H0U A;  1ICV A;  1OO6 A;  3KWK A;  4QLX A;  3EK3 A;  2YMV A;  3G14 A;  1NEC A;  1V5Y A;  1IDT A;  3BM2 A;  4TTC A;  4XOO A;  3TO0 A;  2WZW A;  2IFA A;  2I7H A;  3GE5 A;  2BKJ A;  3GE6 A;  3GAG A;  4TTB A;  2FRE A;  2HAY A;  3EOF A;  3X22 A;  1F5V A;  4BN8 A;  4XOM A;  4XOQ A;  5KO7 A;  1BKJ A;  1ICR A;  4G8S A;  3BM1 A;  2WZV A;  4BN7 A;  2ISJ A;  3OF4 A;  1ZCH A;  3GFD A;  1OON A;  3E10 A;  5KRD A;  3TNZ A;  4BN6 A;  3HJ9 A;  1NOX A;  3EO8 A;  3H4O A;  3HOI A;  3BEM A;  4BN9 A;  3GBH A;  4BNB A;  3GB5 A;  3PXV A;  4URP A;  3GH8 A;  4DN2 A;  1OO5 A;  1VFR A;  1VKW A;  2R01 A;  3EO7 A;  5KO8 A;  3QDL A;  1YLU A;  2ISL A;  3HZN A;  2WQF A;  1YKI A; 
#chains in the Genus database with same CATH topology
 1DS7 A;  4QLY A;  3K6H A;  5HEI A;  1KQC A;  4EO3 A;  1KQB A;  3KOQ A;  1V5Z A;  3E39 A;  2B67 A;  5HDJ A;  5J6C A;  1YLR A;  3M5K A;  2ISK A;  3N2S A;  3GFA A;  1ICU A;  1KQD A;  1OOQ A;  3GR3 A;  3X21 A;  1YWQ A;  2H0U A;  1ICV A;  1OO6 A;  3KWK A;  4QLX A;  3EK3 A;  2YMV A;  3G14 A;  1NEC A;  1V5Y A;  1IDT A;  3BM2 A;  4TTC A;  4XOO A;  3TO0 A;  2WZW A;  2IFA A;  2I7H A;  3GE5 A;  2BKJ A;  3GE6 A;  3GAG A;  4TTB A;  2FRE A;  2HAY A;  3EOF A;  3X22 A;  1F5V A;  4BN8 A;  1J6R A;  4XOM A;  4XOQ A;  5KO7 A;  1BKJ A;  1ICR A;  4G8S A;  3BM1 A;  2WZV A;  4BN7 A;  2ISJ A;  3OF4 A;  1ZCH A;  3GFD A;  1OON A;  3E10 A;  5KRD A;  3TNZ A;  4BN6 A;  3HJ9 A;  1NOX A;  3EO8 A;  3H4O A;  3HOI A;  3BEM A;  4BN9 A;  3GBH A;  4BNB A;  3GB5 A;  3PXV A;  4URP A;  3GH8 A;  4DN2 A;  1OO5 A;  1VFR A;  1VKW A;  2R01 A;  3EO7 A;  5KO8 A;  3QDL A;  1YLU A;  2ISL A;  3HZN A;  2WQF A;  1YKI A; 
#chains in the Genus database with same CATH homology
 1DS7 A;  4QLY A;  3K6H A;  5HEI A;  1KQC A;  4EO3 A;  1KQB A;  3KOQ A;  1V5Z A;  3E39 A;  2B67 A;  5HDJ A;  5J6C A;  1YLR A;  3M5K A;  2ISK A;  3N2S A;  3GFA A;  1ICU A;  1KQD A;  1OOQ A;  3GR3 A;  3X21 A;  1YWQ A;  2H0U A;  1ICV A;  1OO6 A;  3KWK A;  4QLX A;  3EK3 A;  2YMV A;  3G14 A;  1NEC A;  1V5Y A;  1IDT A;  3BM2 A;  4TTC A;  4XOO A;  3TO0 A;  2WZW A;  2IFA A;  2I7H A;  3GE5 A;  2BKJ A;  3GE6 A;  3GAG A;  4TTB A;  2FRE A;  2HAY A;  3EOF A;  3X22 A;  1F5V A;  4BN8 A;  1J6R A;  4XOM A;  4XOQ A;  5KO7 A;  1BKJ A;  1ICR A;  4G8S A;  3BM1 A;  2WZV A;  4BN7 A;  2ISJ A;  3OF4 A;  1ZCH A;  3GFD A;  1OON A;  3E10 A;  5KRD A;  3TNZ A;  4BN6 A;  3HJ9 A;  1NOX A;  3EO8 A;  3H4O A;  3HOI A;  3BEM A;  4BN9 A;  3GBH A;  4BNB A;  3GB5 A;  3PXV A;  4URP A;  3GH8 A;  4DN2 A;  1OO5 A;  1VFR A;  1VKW A;  2R01 A;  3EO7 A;  5KO8 A;  3QDL A;  1YLU A;  2ISL A;  3HZN A;  2WQF A;  1YKI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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