1VM9A

The x-ray structure of the cys84ala cys85ala double mutant of the [2fe-2s] ferredoxin subunit of toluene-4-monooxygenase from pseudomonas mendocina kr1
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
109
structure length
109
Chain Sequence
SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVKGDDIYVSTKGILPNKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Toluene-4-monooxygenase system protein C
publication title Structure of T4moC, the Rieske-type ferredoxin component of toluene 4-monooxygenase.
pubmed doi rcsb
source organism Pseudomonas mendocina
total genus 23
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2004-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1vm9A00
3BCCE 1PPJE 4HM1A 3L71E 1O7MA 3GB4A 4PV1D 2YIUC 4HM8A 3H1IE 4HM6A 1Q90C 1NTME 1O7NA 2YVJB 4HM2A 3H1LE 2D2CD 2XSOA 3EQQA 1FQTA 1VF5D 4NBED 1L0LE 3H1HE 3FOUA 1VCKA 5AEUA 3GL2A 4HM5A 1NTKE 2QJKC 4AAYB 2BMQA 4OGQD 2ZYLA 2YFJA 2Q3WA 2XSHA 4H0LD 3TGUE 1SQQE 2NVEA 1SQVE 1NTZE 1KB9E 4NBDD 1SQPE 1P84E 2HMNA 1O7GA 4P1BH 3L70E 3DQYA 4QDDA 2YFLA 3D89A 1UUWA 2E75D 2YFIA 3L72E 4NBCD 4HKVA 2E76D 1O7HA 3VMHD 3VCAA 1O7WA 3GKEA 1SJGA 1UUVA 1EG9A 5AEWA 1SQXE 2DE6D 4QDFA 2HMJA 1ULIA 1BE3E 3EN1A 4HM7A 5HL4A 1G8JB 1SQBE 1L0NE 2QPZA 4EMJB 2IBZE 2NVGA 4H44D 2E4PA 4PD4E 2BCCE 1VM9A 4HJLA 4QUPA 1O7PA 2HMOA 4QUQA 4U3FE 3C0DA 4H13D 3GTSA 2HMKA 2QJYC 1PP9E 3L75E 4P1CH 2DE7D 2JO6A 3GOBA 2GBWA 2B1XA 4NB9D 2ZT9D 1JM1A 1G8KB 3CWBE 2A06E 5CXMA 2I7FA 2QJPC 4AIVA 2E4QA 2NWFA 1EZVE 3VMGD 2JZAA 4QDFB 1NDOA 5KLIC 5KLVE 2FYNC 2XR8A 4QDCA 4NB8D 2GBXA 2HMMA 3GZYA 4QCKA 1RIEA 2XRXA 1KYOE 5BOKA 4NBAD 3GTEA 4NBFD 2FYUE 2NUKA 4NBGD 3GCEA 3CX5E 3VMID 3GL0A 3AZCA 3L73E 2HMLA 2B24A 3CXHE 1WQLA 3H1JE 4QURA 3N0QA 1ULJA 2NUMA 2DE5D 2BMOA 1NU1E 2BMRA 3L74E 2E74D 4HM3A 1BCCE 1NYKA 4NBHD 2CKFA 5KKZC 3H1KE 4HM0A 3VCPA 1ZRTE 2NVFA 4HM4A 4NBBD 3GZXA 1RFSA
chains in the Genus database with same CATH superfamily
3BCCE 1PPJE 4HM1A 3L71E 1O7MA 3GB4A 4PV1D 2YIUC 4HM8A 3H1IE 4HM6A 1Q90C 1NTME 1O7NA 2YVJB 4HM2A 3H1LE 2D2CD 2XSOA 3EQQA 1FQTA 1VF5D 4NBED 1L0LE 3H1HE 3FOUA 1VCKA 5AEUA 3GL2A 4HM5A 1NTKE 2QJKC 4AAYB 2BMQA 4OGQD 2ZYLA 2YFJA 2Q3WA 2XSHA 4H0LD 3TGUE 1SQQE 2NVEA 1SQVE 1NTZE 1KB9E 4NBDD 1SQPE 1P84E 2HMNA 1O7GA 4P1BH 3L70E 3DQYA 4QDDA 2YFLA 3D89A 1UUWA 2E75D 2YFIA 3L72E 4NBCD 4HKVA 2E76D 1O7HA 3VMHD 3VCAA 1O7WA 3GKEA 1SJGA 1UUVA 1EG9A 5AEWA 1SQXE 2DE6D 4QDFA 2HMJA 1ULIA 1BE3E 3EN1A 4HM7A 5HL4A 1G8JB 1SQBE 1L0NE 2QPZA 4EMJB 2IBZE 2NVGA 4H44D 2E4PA 4PD4E 2BCCE 1VM9A 4HJLA 4QUPA 1O7PA 2HMOA 4QUQA 4U3FE 3C0DA 4H13D 3GTSA 2HMKA 2QJYC 1PP9E 3L75E 4P1CH 2DE7D 2JO6A 3GOBA 2GBWA 2B1XA 4NB9D 2ZT9D 1JM1A 1G8KB 3CWBE 2A06E 5CXMA 2I7FA 2QJPC 4AIVA 2E4QA 2NWFA 1EZVE 3VMGD 2JZAA 4QDFB 1NDOA 5KLIC 5KLVE 2FYNC 2XR8A 4QDCA 4NB8D 2GBXA 2HMMA 3GZYA 4QCKA 1RIEA 2XRXA 1KYOE 5BOKA 4NBAD 3GTEA 4NBFD 2FYUE 2NUKA 4NBGD 3GCEA 3CX5E 3VMID 3GL0A 3AZCA 3L73E 2HMLA 2B24A 3CXHE 1WQLA 3H1JE 4QURA 3N0QA 1ULJA 2NUMA 2DE5D 2BMOA 1NU1E 2BMRA 3L74E 2E74D 4HM3A 1BCCE 1NYKA 4NBHD 2CKFA 5KKZC 3H1KE 4HM0A 3VCPA 1ZRTE 2NVFA 4HM4A 4NBBD 3GZXA 1RFSA
chains in the Genus database with same CATH topology
3BCCE 1PPJE 4HM1A 3L71E 1O7MA 3GB4A 4PV1D 2YIUC 4HM8A 3H1IE 4HM6A 1Q90C 1NTME 1O7NA 2YVJB 4HM2A 3H1LE 2D2CD 2XSOA 3EQQA 1FQTA 1VF5D 4NBED 1L0LE 3H1HE 3FOUA 1VCKA 5AEUA 3GL2A 4HM5A 1NTKE 2QJKC 4AAYB 2BMQA 4OGQD 2ZYLA 2YFJA 2Q3WA 2XSHA 4H0LD 3TGUE 1SQQE 2NVEA 1SQVE 1NTZE 1KB9E 4NBDD 1SQPE 1P84E 2HMNA 1O7GA 4P1BH 3L70E 3DQYA 4QDDA 2YFLA 3D89A 1UUWA 2E75D 2YFIA 3L72E 4NBCD 4HKVA 2E76D 1O7HA 3VMHD 3VCAA 1O7WA 3GKEA 1SJGA 1UUVA 1EG9A 5AEWA 1SQXE 2DE6D 4QDFA 2HMJA 1ULIA 1BE3E 3EN1A 4HM7A 5HL4A 1G8JB 1SQBE 1L0NE 2QPZA 4EMJB 2IBZE 2NVGA 4H44D 2E4PA 4PD4E 2BCCE 1VM9A 4HJLA 4QUPA 1O7PA 2HMOA 4QUQA 4U3FE 3C0DA 4H13D 3GTSA 2HMKA 2QJYC 1PP9E 3L75E 4P1CH 2DE7D 2JO6A 3GOBA 2GBWA 2B1XA 4NB9D 2ZT9D 1JM1A 1G8KB 3CWBE 2A06E 5CXMA 2I7FA 2QJPC 4AIVA 2E4QA 2NWFA 1EZVE 3VMGD 2JZAA 4QDFB 1NDOA 5KLIC 5KLVE 2FYNC 2XR8A 4QDCA 4NB8D 2GBXA 2HMMA 3GZYA 4QCKA 1RIEA 2XRXA 1KYOE 5BOKA 4NBAD 3GTEA 4NBFD 2FYUE 2NUKA 4NBGD 3GCEA 3CX5E 3VMID 3GL0A 3AZCA 3L73E 2HMLA 2B24A 3CXHE 1WQLA 3H1JE 4QURA 3N0QA 1ULJA 2NUMA 2DE5D 2BMOA 1NU1E 2BMRA 3L74E 2E74D 4HM3A 1BCCE 1NYKA 4NBHD 2CKFA 5KKZC 3H1KE 4HM0A 3VCPA 1ZRTE 2NVFA 4HM4A 4NBBD 3GZXA 1RFSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BCC E;  1PPJ E;  4HM1 A;  3L71 E;  1O7M A;  3GB4 A;  4PV1 D;  2YIU C;  4HM8 A;  3H1I E;  4HM6 A;  1Q90 C;  1NTM E;  1O7N A;  2YVJ B;  4HM2 A;  3H1L E;  2D2C D;  2XSO A;  3EQQ A;  1FQT A;  1VF5 D;  4NBE D;  1L0L E;  3H1H E;  3FOU A;  1VCK A;  5AEU A;  3GL2 A;  4HM5 A;  1NTK E;  2QJK C;  4AAY B;  2BMQ A;  4OGQ D;  2ZYL A;  2YFJ A;  2Q3W A;  2XSH A;  4H0L D;  3TGU E;  1SQQ E;  2NVE A;  1SQV E;  1NTZ E;  1KB9 E;  4NBD D;  1SQP E;  1P84 E;  2HMN A;  1O7G A;  4P1B H;  3L70 E;  3DQY A;  4QDD A;  2YFL A;  3D89 A;  1UUW A;  2E75 D;  2YFI A;  3L72 E;  4NBC D;  4HKV A;  2E76 D;  1O7H A;  3VMH D;  3VCA A;  1O7W A;  3GKE A;  1SJG A;  1UUV A;  1EG9 A;  5AEW A;  1SQX E;  2DE6 D;  4QDF A;  2HMJ A;  1ULI A;  1BE3 E;  3EN1 A;  4HM7 A;  5HL4 A;  1G8J B;  1SQB E;  1L0N E;  2QPZ A;  4EMJ B;  2IBZ E;  2NVG A;  4H44 D;  2E4P A;  4PD4 E;  2BCC E;  1VM9 A;  4HJL A;  4QUP A;  1O7P A;  2HMO A;  4QUQ A;  4U3F E;  3C0D A;  4H13 D;  3GTS A;  2HMK A;  2QJY C;  1PP9 E;  3L75 E;  4P1C H;  2DE7 D;  2JO6 A;  3GOB A;  2GBW A;  2B1X A;  4NB9 D;  2ZT9 D;  1JM1 A;  1G8K B;  3CWB E;  2A06 E;  5CXM A;  2I7F A;  2QJP C;  4AIV A;  2E4Q A;  2NWF A;  1EZV E;  3VMG D;  2JZA A;  4QDF B;  1NDO A;  5KLI C;  5KLV E;  2FYN C;  2XR8 A;  4QDC A;  4NB8 D;  2GBX A;  2HMM A;  3GZY A;  4QCK A;  1RIE A;  2XRX A;  1KYO E;  5BOK A;  4NBA D;  3GTE A;  4NBF D;  2FYU E;  2NUK A;  4NBG D;  3GCE A;  3CX5 E;  3VMI D;  3GL0 A;  3AZC A;  3L73 E;  2HML A;  2B24 A;  3CXH E;  1WQL A;  3H1J E;  4QUR A;  3N0Q A;  1ULJ A;  2NUM A;  2DE5 D;  2BMO A;  1NU1 E;  2BMR A;  3L74 E;  2E74 D;  4HM3 A;  1BCC E;  1NYK A;  4NBH D;  2CKF A;  5KKZ C;  3H1K E;  4HM0 A;  3VCP A;  1ZRT E;  2NVF A;  4HM4 A;  4NBB D;  3GZX A;  1RFS A; 
#chains in the Genus database with same CATH topology
 3BCC E;  1PPJ E;  4HM1 A;  3L71 E;  1O7M A;  3GB4 A;  4PV1 D;  2YIU C;  4HM8 A;  3H1I E;  4HM6 A;  1Q90 C;  1NTM E;  1O7N A;  2YVJ B;  4HM2 A;  3H1L E;  2D2C D;  2XSO A;  3EQQ A;  1FQT A;  1VF5 D;  4NBE D;  1L0L E;  3H1H E;  3FOU A;  1VCK A;  5AEU A;  3GL2 A;  4HM5 A;  1NTK E;  2QJK C;  4AAY B;  2BMQ A;  4OGQ D;  2ZYL A;  2YFJ A;  2Q3W A;  2XSH A;  4H0L D;  3TGU E;  1SQQ E;  2NVE A;  1SQV E;  1NTZ E;  1KB9 E;  4NBD D;  1SQP E;  1P84 E;  2HMN A;  1O7G A;  4P1B H;  3L70 E;  3DQY A;  4QDD A;  2YFL A;  3D89 A;  1UUW A;  2E75 D;  2YFI A;  3L72 E;  4NBC D;  4HKV A;  2E76 D;  1O7H A;  3VMH D;  3VCA A;  1O7W A;  3GKE A;  1SJG A;  1UUV A;  1EG9 A;  5AEW A;  1SQX E;  2DE6 D;  4QDF A;  2HMJ A;  1ULI A;  1BE3 E;  3EN1 A;  4HM7 A;  5HL4 A;  1G8J B;  1SQB E;  1L0N E;  2QPZ A;  4EMJ B;  2IBZ E;  2NVG A;  4H44 D;  2E4P A;  4PD4 E;  2BCC E;  1VM9 A;  4HJL A;  4QUP A;  1O7P A;  2HMO A;  4QUQ A;  4U3F E;  3C0D A;  4H13 D;  3GTS A;  2HMK A;  2QJY C;  1PP9 E;  3L75 E;  4P1C H;  2DE7 D;  2JO6 A;  3GOB A;  2GBW A;  2B1X A;  4NB9 D;  2ZT9 D;  1JM1 A;  1G8K B;  3CWB E;  2A06 E;  5CXM A;  2I7F A;  2QJP C;  4AIV A;  2E4Q A;  2NWF A;  1EZV E;  3VMG D;  2JZA A;  4QDF B;  1NDO A;  5KLI C;  5KLV E;  2FYN C;  2XR8 A;  4QDC A;  4NB8 D;  2GBX A;  2HMM A;  3GZY A;  4QCK A;  1RIE A;  2XRX A;  1KYO E;  5BOK A;  4NBA D;  3GTE A;  4NBF D;  2FYU E;  2NUK A;  4NBG D;  3GCE A;  3CX5 E;  3VMI D;  3GL0 A;  3AZC A;  3L73 E;  2HML A;  2B24 A;  3CXH E;  1WQL A;  3H1J E;  4QUR A;  3N0Q A;  1ULJ A;  2NUM A;  2DE5 D;  2BMO A;  1NU1 E;  2BMR A;  3L74 E;  2E74 D;  4HM3 A;  1BCC E;  1NYK A;  4NBH D;  2CKF A;  5KKZ C;  3H1K E;  4HM0 A;  3VCP A;  1ZRT E;  2NVF A;  4HM4 A;  4NBB D;  3GZX A;  1RFS A; 
#chains in the Genus database with same CATH homology
 3BCC E;  1PPJ E;  4HM1 A;  3L71 E;  1O7M A;  3GB4 A;  4PV1 D;  2YIU C;  4HM8 A;  3H1I E;  4HM6 A;  1Q90 C;  1NTM E;  1O7N A;  2YVJ B;  4HM2 A;  3H1L E;  2D2C D;  2XSO A;  3EQQ A;  1FQT A;  1VF5 D;  4NBE D;  1L0L E;  3H1H E;  3FOU A;  1VCK A;  5AEU A;  3GL2 A;  4HM5 A;  1NTK E;  2QJK C;  4AAY B;  2BMQ A;  4OGQ D;  2ZYL A;  2YFJ A;  2Q3W A;  2XSH A;  4H0L D;  3TGU E;  1SQQ E;  2NVE A;  1SQV E;  1NTZ E;  1KB9 E;  4NBD D;  1SQP E;  1P84 E;  2HMN A;  1O7G A;  4P1B H;  3L70 E;  3DQY A;  4QDD A;  2YFL A;  3D89 A;  1UUW A;  2E75 D;  2YFI A;  3L72 E;  4NBC D;  4HKV A;  2E76 D;  1O7H A;  3VMH D;  3VCA A;  1O7W A;  3GKE A;  1SJG A;  1UUV A;  1EG9 A;  5AEW A;  1SQX E;  2DE6 D;  4QDF A;  2HMJ A;  1ULI A;  1BE3 E;  3EN1 A;  4HM7 A;  5HL4 A;  1G8J B;  1SQB E;  1L0N E;  2QPZ A;  4EMJ B;  2IBZ E;  2NVG A;  4H44 D;  2E4P A;  4PD4 E;  2BCC E;  1VM9 A;  4HJL A;  4QUP A;  1O7P A;  2HMO A;  4QUQ A;  4U3F E;  3C0D A;  4H13 D;  3GTS A;  2HMK A;  2QJY C;  1PP9 E;  3L75 E;  4P1C H;  2DE7 D;  2JO6 A;  3GOB A;  2GBW A;  2B1X A;  4NB9 D;  2ZT9 D;  1JM1 A;  1G8K B;  3CWB E;  2A06 E;  5CXM A;  2I7F A;  2QJP C;  4AIV A;  2E4Q A;  2NWF A;  1EZV E;  3VMG D;  2JZA A;  4QDF B;  1NDO A;  5KLI C;  5KLV E;  2FYN C;  2XR8 A;  4QDC A;  4NB8 D;  2GBX A;  2HMM A;  3GZY A;  4QCK A;  1RIE A;  2XRX A;  1KYO E;  5BOK A;  4NBA D;  3GTE A;  4NBF D;  2FYU E;  2NUK A;  4NBG D;  3GCE A;  3CX5 E;  3VMI D;  3GL0 A;  3AZC A;  3L73 E;  2HML A;  2B24 A;  3CXH E;  1WQL A;  3H1J E;  4QUR A;  3N0Q A;  1ULJ A;  2NUM A;  2DE5 D;  2BMO A;  1NU1 E;  2BMR A;  3L74 E;  2E74 D;  4HM3 A;  1BCC E;  1NYK A;  4NBH D;  2CKF A;  5KKZ C;  3H1K E;  4HM0 A;  3VCP A;  1ZRT E;  2NVF A;  4HM4 A;  4NBB D;  3GZX A;  1RFS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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