1VOLB

Tfiib (human core domain)/tbp (a.thaliana)/tata element ternary complex
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
187
structure length
187
Chain Sequence
VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a TFIIB-TBP-TATA-element ternary complex.
pubmed doi rcsb
molecule keywords DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3
source organism Homo sapiens
molecule tags Transcription/dna
total genus 41
structure length 187
sequence length 187
ec nomenclature
pdb deposition date 1996-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1volB01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1volB02
1R4XA 3ASMA 1QTPA 1W80A 1KY6A 1QNCA 2IV8A 1B9KA 1NVPA 1CDWA 1QTSA 2VJ0A 4ROCB 1QN7A 1PCZA 1QN9A 1VOKA 2D0BA 1QNAA 2G30A 3HS9A 1AISA 1KYFA 1E42A 5IYCP 1KYUA 1D3UA 1TBAB 3EIKA 1YTFA 1VOLB 4PY5A 4ROEB 3OC3C 5IYBP 4B0AA 2IV9A 2D0AA 5IYDP 1YTBA 1TGHA 2MJ7A 1QNBA 2Z8UA 3H1ZA 1QN5A 1QN6A 4WZSD 1KY7A 1QNEA 1PZDA 1NH2A 1NGMA 3VN5A 1C9BB 3HS8A 1QN3A 1VTOA 1VTLE 1RM1A 1QN8A 2D0CA 1MP9A 1QN4A 4RODB 1KYDA 1TBPA 1JFIC 3OCIA
chains in the Genus database with same CATH superfamily
1R4XA 3ASMA 1QTPA 2O3OA 3CWAA 1QNCA 1NVPA 3DPUA 2HL8A 2QRDA 2YH5A 1E42A 1EUVA 3T4NA 4EAGA 3EIKA 3NA5A 1YTFA 1VOLB 1YQLA 1PCJX 4EAJA 3PMGA 4B0AA 2QREA 3TE5A 4EAIA 5IYDP 4WXAA 4I8OA 1TGHA 1QNBA 2HZMA 3OSEA 3IH7A 2V9JA 2FKFA 3OH6A 3SNSA 1UL7A 4C7PA 1PZDA 5JMVD 1Q9UA 1K35A 3VN5A 1FN7A 3HS8A 2QLVA 4D7QA 1VTOA 1QN3A 3EAYA 1M3HA 3F0ZA 3CWSA 1MP9A 1M3QA 1WJWA 2V92A 2JHJA 3OCIA 1UT7A 2IV8A 1B9KA 4CFFA 2HZSA 2VJ0A 1QN9A 2FUVA 1VOKA 2D0BA 2R5XA 4DULA 4EJZA 1KYFA 5EPCA 1T6AA 2DKDA 1V5SA 4MRQA 4BJUA 2XHIA 3ENCA 1MPGA 1JDYA 5IYBP 1EBMA 2FKMX 2OOYA 2MJ7A 2NLVA 2ZFDB 2Y8QA 1VKLA 2V8QA 3CW7A 1WQAA 4WZSD 3RSMA 4HJHA 1QNEA 1PCMX 1NGMA 3OSMA 1K2YX 1PVSA 5HSHA 1YQRA 3CVTA 2Y8LA 2D0CA 2NVMA 1HU0A 1QN4A 1C4GA 1JFIC 2PWWA 4Q11A 1J3MA 1KFQA 4D7RA 4EJYA 2NOIA 1N3AA 1QTSA 4QG5A 2JHNA 1XSZA 2H5AX 1AISA 3D4VA 2NOBA 1KYUA 4IL8A 3TDHA 4EALA 3DPTA 1TBAB 3OGDA 2LAEA 1LXTA 3OC3C 4ROEB 2I5WA 1DIZA 2D0AA 2HKPA 2JPIA 2NWVA 2Z0FA 3OSTA 3OLPA 3D7QA 3KTUA 3H1ZA 1QN5A 3RPJA 1QN6A 1N3CA 1NH2A 3I0XA 4EAKA 5F9CA 3CVSA 2QRCA 1N39A 1QN8A 2NOLA 4RODB 1KYDA 3CWTA 3F10A 1UT4A 2DKCA 2NOFA 1W80A 1KY6A 2JOIA 1LWYA 1CDWA 3ENOC 4ROCB 1QN7A 1PCZA 2HL9A 3CWUA 1QNAA 2G30A 2MZ8A 2OOXA 3C04A 3HS9A 3ULXA 5IYCP 2DKAA 1YQKA 2NOEA 5KL0A 3N89A 1D3UA 2YA3A 3BKQX 2H4LX 3PDKA 1LWVA 1P5DX 4PY5A 1TUOA 3I3WA 2IV9A 1M5Q1 1YTBA 3KRMA 1KO9A 5BMPA 1LWWA 2EHBD 2Z8UA 2FGTA 3I0WA 1KY7A 5BMNA 2NOHA 1KFIA 5JN5A 1YQMA 4WX8A 3UW2A 3OH9A 2QR1A 1C9BB 5AN4A 2F7LA 4TPSA 1VTLE 1RM1A 1C47A 2NOZA 1P5GX 1TBPA
chains in the Genus database with same CATH topology
1R4XA 3ASMA 1QTPA 2O3OA 1QNCA 1NVPA 3DPUA 2YH5A 1E42A 3EIKA 1YTFA 1VOLB 1YQLA 4B0AA 5IYDP 4I8OA 1TGHA 1QNBA 2HZMA 3IH7A 3SNSA 1PZDA 1FN7A 3VN5A 3HS8A 1QN3A 1VTOA 1M3HA 3F0ZA 1MP9A 1M3QA 3OCIA 1UT7A 2IV8A 1B9KA 2HZSA 2VJ0A 1QN9A 1VOKA 2D0BA 4DULA 4EJZA 1KYFA 2XHIA 5IYBP 1EBMA 2MJ7A 4WZSD 1QNEA 1NGMA 3OSMA 1YQRA 2D0CA 1HU0A 1QN4A 1JFIC 4Q11A 2NOIA 4EJYA 1N3AA 1QTSA 1AISA 2NOBA 1KYUA 3DPTA 1TBAB 2I5WA 2LAEA 4ROEB 3OC3C 2D0AA 3OSTA 3KTUA 3H1ZA 1QN5A 3RPJA 1QN6A 1N3CA 1NH2A 3I0XA 1N39A 1QN8A 2NOLA 4RODB 1KYDA 3F10A 1UT4A 2NOFA 1W80A 1KY6A 2JOIA 1LWYA 1CDWA 4ROCB 1QN7A 1PCZA 1QNAA 2G30A 2MZ8A 3HS9A 3ULXA 1YQKA 5IYCP 2NOEA 3N89A 1D3UA 4PY5A 1LWVA 2IV9A 1YTBA 3KRMA 1KO9A 1LWWA 2Z8UA 2FGTA 3I0WA 1KY7A 2NOHA 1YQMA 1C9BB 5AN4A 4TPSA 1VTLE 1RM1A 2NOZA 1TBPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R4X A;  3ASM A;  1QTP A;  1W80 A;  1KY6 A;  1QNC A;  2IV8 A;  1B9K A;  1NVP A;  1CDW A;  1QTS A;  2VJ0 A;  4ROC B;  1QN7 A;  1PCZ A;  1QN9 A;  1VOK A;  2D0B A;  1QNA A;  2G30 A;  3HS9 A;  1AIS A;  1KYF A;  1E42 A;  5IYC P;  1KYU A;  1D3U A;  1TBA B;  3EIK A;  1YTF A;  1VOL B;  4PY5 A;  4ROE B;  3OC3 C;  5IYB P;  4B0A A;  2IV9 A;  2D0A A;  5IYD P;  1YTB A;  1TGH A;  2MJ7 A;  1QNB A;  2Z8U A;  3H1Z A;  1QN5 A;  1QN6 A;  4WZS D;  1KY7 A;  1QNE A;  1PZD A;  1NH2 A;  1NGM A;  3VN5 A;  1C9B B;  3HS8 A;  1QN3 A;  1VTO A;  1VTL E;  1RM1 A;  1QN8 A;  2D0C A;  1MP9 A;  1QN4 A;  4ROD B;  1KYD A;  1TBP A;  1JFI C;  3OCI A; 
#chains in the Genus database with same CATH topology
 1R4X A;  3ASM A;  1QTP A;  2O3O A;  3CWA A;  1QNC A;  1NVP A;  3DPU A;  2HL8 A;  2QRD A;  2YH5 A;  1E42 A;  1EUV A;  3T4N A;  4EAG A;  3EIK A;  3NA5 A;  1YTF A;  1VOL B;  1YQL A;  1PCJ X;  4EAJ A;  3PMG A;  4B0A A;  2QRE A;  3TE5 A;  4EAI A;  5IYD P;  4WXA A;  4I8O A;  1TGH A;  1QNB A;  2HZM A;  3OSE A;  3IH7 A;  2V9J A;  2FKF A;  3OH6 A;  3SNS A;  1UL7 A;  4C7P A;  1PZD A;  5JMV D;  1Q9U A;  1K35 A;  3VN5 A;  1FN7 A;  3HS8 A;  2QLV A;  4D7Q A;  1VTO A;  1QN3 A;  3EAY A;  1M3H A;  3F0Z A;  3CWS A;  1MP9 A;  1M3Q A;  1WJW A;  2V92 A;  2JHJ A;  3OCI A;  1UT7 A;  2IV8 A;  1B9K A;  4CFF A;  2HZS A;  2VJ0 A;  1QN9 A;  2FUV A;  1VOK A;  2D0B A;  2R5X A;  4DUL A;  4EJZ A;  1KYF A;  5EPC A;  1T6A A;  2DKD A;  1V5S A;  4MRQ A;  4BJU A;  2XHI A;  3ENC A;  1MPG A;  1JDY A;  5IYB P;  1EBM A;  2FKM X;  2OOY A;  2MJ7 A;  2NLV A;  2ZFD B;  2Y8Q A;  1VKL A;  2V8Q A;  3CW7 A;  1WQA A;  4WZS D;  3RSM A;  4HJH A;  1QNE A;  1PCM X;  1NGM A;  3OSM A;  1K2Y X;  1PVS A;  5HSH A;  1YQR A;  3CVT A;  2Y8L A;  2D0C A;  2NVM A;  1HU0 A;  1QN4 A;  1C4G A;  1JFI C;  2PWW A;  4Q11 A;  1J3M A;  1KFQ A;  4D7R A;  4EJY A;  2NOI A;  1N3A A;  1QTS A;  4QG5 A;  2JHN A;  1XSZ A;  2H5A X;  1AIS A;  3D4V A;  2NOB A;  1KYU A;  4IL8 A;  3TDH A;  4EAL A;  3DPT A;  1TBA B;  3OGD A;  2LAE A;  1LXT A;  3OC3 C;  4ROE B;  2I5W A;  1DIZ A;  2D0A A;  2HKP A;  2JPI A;  2NWV A;  2Z0F A;  3OST A;  3OLP A;  3D7Q A;  3KTU A;  3H1Z A;  1QN5 A;  3RPJ A;  1QN6 A;  1N3C A;  1NH2 A;  3I0X A;  4EAK A;  5F9C A;  3CVS A;  2QRC A;  1N39 A;  1QN8 A;  2NOL A;  4ROD B;  1KYD A;  3CWT A;  3F10 A;  1UT4 A;  2DKC A;  2NOF A;  1W80 A;  1KY6 A;  2JOI A;  1LWY A;  1CDW A;  3ENO C;  4ROC B;  1QN7 A;  1PCZ A;  2HL9 A;  3CWU A;  1QNA A;  2G30 A;  2MZ8 A;  2OOX A;  3C04 A;  3HS9 A;  3ULX A;  5IYC P;  2DKA A;  1YQK A;  2NOE A;  5KL0 A;  3N89 A;  1D3U A;  2YA3 A;  3BKQ X;  2H4L X;  3PDK A;  1LWV A;  1P5D X;  4PY5 A;  1TUO A;  3I3W A;  2IV9 A;  1M5Q 1;  1YTB A;  3KRM A;  1KO9 A;  5BMP A;  1LWW A;  2EHB D;  2Z8U A;  2FGT A;  3I0W A;  1KY7 A;  5BMN A;  2NOH A;  1KFI A;  5JN5 A;  1YQM A;  4WX8 A;  3UW2 A;  3OH9 A;  2QR1 A;  1C9B B;  5AN4 A;  2F7L A;  4TPS A;  1VTL E;  1RM1 A;  1C47 A;  2NOZ A;  1P5G X;  1TBP A; 
#chains in the Genus database with same CATH homology
 1R4X A;  3ASM A;  1QTP A;  2O3O A;  1QNC A;  1NVP A;  3DPU A;  2YH5 A;  1E42 A;  3EIK A;  1YTF A;  1VOL B;  1YQL A;  4B0A A;  5IYD P;  4I8O A;  1TGH A;  1QNB A;  2HZM A;  3IH7 A;  3SNS A;  1PZD A;  1FN7 A;  3VN5 A;  3HS8 A;  1QN3 A;  1VTO A;  1M3H A;  3F0Z A;  1MP9 A;  1M3Q A;  3OCI A;  1UT7 A;  2IV8 A;  1B9K A;  2HZS A;  2VJ0 A;  1QN9 A;  1VOK A;  2D0B A;  4DUL A;  4EJZ A;  1KYF A;  2XHI A;  5IYB P;  1EBM A;  2MJ7 A;  4WZS D;  1QNE A;  1NGM A;  3OSM A;  1YQR A;  2D0C A;  1HU0 A;  1QN4 A;  1JFI C;  4Q11 A;  2NOI A;  4EJY A;  1N3A A;  1QTS A;  1AIS A;  2NOB A;  1KYU A;  3DPT A;  1TBA B;  2I5W A;  2LAE A;  4ROE B;  3OC3 C;  2D0A A;  3OST A;  3KTU A;  3H1Z A;  1QN5 A;  3RPJ A;  1QN6 A;  1N3C A;  1NH2 A;  3I0X A;  1N39 A;  1QN8 A;  2NOL A;  4ROD B;  1KYD A;  3F10 A;  1UT4 A;  2NOF A;  1W80 A;  1KY6 A;  2JOI A;  1LWY A;  1CDW A;  4ROC B;  1QN7 A;  1PCZ A;  1QNA A;  2G30 A;  2MZ8 A;  3HS9 A;  3ULX A;  1YQK A;  5IYC P;  2NOE A;  3N89 A;  1D3U A;  4PY5 A;  1LWV A;  2IV9 A;  1YTB A;  3KRM A;  1KO9 A;  1LWW A;  2Z8U A;  2FGT A;  3I0W A;  1KY7 A;  2NOH A;  1YQM A;  1C9B B;  5AN4 A;  4TPS A;  1VTL E;  1RM1 A;  2NOZ A;  1TBP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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