1VOLB

Tfiib (human core domain)/tbp (a.thaliana)/tata element ternary complex
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
187
structure length
187
Chain Sequence
VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
source organism Homo sapiens
publication title Crystal structure of a TFIIB-TBP-TATA-element ternary complex.
pubmed doi rcsb
molecule keywords DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3
total genus 41
structure length 187
sequence length 187
ec nomenclature
pdb deposition date 1996-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1volB01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1volB02
3OCIA 2Z8UA 4PY5A 1QN3A 1W80A 1YTFA 1QTSA 1KY7A 2VJ0A 2D0CA 2IV9A 1VTLE 1NGMA 1AISA 1RM1A 5IYDP 1KYUA 3OC3C 1TBAB 1QNBA 1QNAA 4RODB 1PZDA 1TBPA 3H1ZA 3HS9A 5IYCP 4ROEB 1D3UA 1YTBA 1PCZA 1QN4A 1KYDA 2MJ7A 3VN5A 5IYBP 1JFIC 1QN5A 1QN8A 1CDWA 3ASMA 1KY6A 2G30A 1QN9A 1TGHA 1NVPA 1C9BB 1QNCA 1QTPA 2D0AA 1NH2A 2IV8A 1VOLB 4ROCB 1MP9A 1VOKA 1QNEA 1QN6A 3HS8A 2D0BA 1R4XA 1QN7A 1E42A 3EIKA 4WZSD 1VTOA 1B9KA 1KYFA 4B0AA
chains in the Genus database with same CATH superfamily
3EAYA 1W80A 2OOYA 4EJZA 1K2YX 3SNSA 3I3WA 2F7LA 3DPTA 1LWVA 5IYDP 3OC3C 3KTUA 2QR1A 3H1ZA 2QLVA 2Y8QA 4ROEB 4BJUA 3OSTA 3DPUA 1KYDA 2FUVA 2QREA 2ZFDB 4IL8A 1YQMA 2MZ8A 2NOBA 4TPSA 3I0WA 2DKDA 2R5XA 2NLVA 1N3AA 2V8QA 4C7PA 4Q11A 4I8OA 2IV8A 2NOEA 2NWVA 1QNEA 1KFIA 3HS8A 2NOHA 2D0BA 1R4XA 1QN7A 2PWWA 4HJHA 1Q9UA 2HL9A 3OSEA 3OCIA 3CWUA 1N39A 1QN3A 1LWYA 2JPIA 1C4GA 1KY7A 2VJ0A 1NGMA 3OSMA 1RM1A 1YQLA 1KYUA 4EAIA 1D3UA 4MRQA 1EBMA 2H5AX 3CWAA 4WX8A 5JMVD 2Z0FA 1T6AA 1VKLA 2HL8A 5IYBP 1KY6A 3F0ZA 3I0XA 1UL7A 2O3OA 1NVPA 4QG5A 2Y8LA 1C9BB 4DULA 1QNCA 2D0AA 1VOLB 1M5Q1 2NVMA 5BMNA 3RPJA 5F9CA 3OGDA 3KRMA 5JN5A 4CFFA 1PCMX 1V5SA 3IH7A 3OLPA 1KFQA 2LAEA 1YTFA 5EPCA 4B0AA 1KO9A 3BKQX 2Z8UA 3CWTA 1P5DX 2D0CA 2IV9A 1UT7A 2JHJA 1AISA 1QNBA 3N89A 1PZDA 2DKCA 2FKMX 3HS9A 3T4NA 3ENCA 2YH5A 2DKAA 1JFIC 1QN5A 1QN8A 3ASMA 3TDHA 3C04A 2EHBD 3UW2A 5KL0A 2I5WA 1PCJX 1NH2A 2JOIA 1MP9A 3PMGA 4WXAA 4ROCB 1LWWA 3OH6A 1XSZA 5BMPA 1QN6A 1M3HA 1E42A 4WZSD 1N3CA 1VTOA 2JHNA 2QRDA 1B9KA 1YQRA 1KYFA 4PY5A 2XHIA 1YQKA 1TUOA 4EAJA 3CVTA 1QTSA 2FGTA 3D7QA 1VTLE 1P5GX 2NOLA 2QRCA 4EAGA 1M3QA 1TBAB 1JDYA 4D7QA 1FN7A 1QNAA 3TE5A 1PVSA 4RODB 1TBPA 3RSMA 5IYCP 3NA5A 3D4VA 3F10A 2OOXA 2V92A 1PCZA 1DIZA 4D7RA 1QN4A 2NOFA 1WQAA 2MJ7A 1J3MA 3VN5A 4EAKA 1HU0A 2NOIA 1CDWA 2HKPA 3CVSA 4EJYA 1LXTA 2G30A 1UT4A 2HZSA 2V9JA 2YA3A 4EALA 1QN9A 1TGHA 3CWSA 1EUVA 1MPGA 3CW7A 1QTPA 1K35A 2FKFA 3ENOC 3ULXA 2NOZA 1VOKA 3OH9A 1WJWA 3PDKA 5AN4A 2HZMA 2H4LX 3EIKA 1C47A 1YTBA 5HSHA
chains in the Genus database with same CATH topology
1W80A 4EJZA 3SNSA 3DPTA 1LWVA 5IYDP 3OC3C 3KTUA 3H1ZA 4ROEB 3OSTA 3DPUA 1KYDA 1YQMA 2MZ8A 2NOBA 4TPSA 3I0WA 1N3AA 4Q11A 4I8OA 2IV8A 2NOEA 1QNEA 3HS8A 2NOHA 2D0BA 1R4XA 1QN7A 3OCIA 1N39A 1QN3A 1LWYA 1KY7A 2VJ0A 1NGMA 3OSMA 1RM1A 1YQLA 1KYUA 1D3UA 1EBMA 5IYBP 1KY6A 3F0ZA 3I0XA 2O3OA 1NVPA 1C9BB 1QNCA 4DULA 2D0AA 1VOLB 3RPJA 3KRMA 3IH7A 2LAEA 1YTFA 4B0AA 1KO9A 2Z8UA 2D0CA 2IV9A 1UT7A 1AISA 1QNBA 3N89A 1PZDA 3HS9A 2YH5A 1JFIC 1QN5A 1QN8A 3ASMA 2I5WA 1NH2A 2JOIA 1MP9A 4ROCB 1LWWA 1QN6A 1M3HA 1E42A 4WZSD 1N3CA 1VTOA 1B9KA 1YQRA 1KYFA 4PY5A 2XHIA 1YQKA 1QTSA 2FGTA 1VTLE 2NOLA 1M3QA 1TBAB 1FN7A 1QNAA 4RODB 1TBPA 5IYCP 3F10A 1PCZA 1QN4A 2NOFA 2MJ7A 3VN5A 1HU0A 2NOIA 1CDWA 4EJYA 2G30A 1UT4A 2HZSA 1QN9A 1TGHA 1QTPA 3ULXA 2NOZA 1VOKA 5AN4A 2HZMA 3EIKA 1YTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OCI A;  2Z8U A;  4PY5 A;  1QN3 A;  1W80 A;  1YTF A;  1QTS A;  1KY7 A;  2VJ0 A;  2D0C A;  2IV9 A;  1VTL E;  1NGM A;  1AIS A;  1RM1 A;  5IYD P;  1KYU A;  3OC3 C;  1TBA B;  1QNB A;  1QNA A;  4ROD B;  1PZD A;  1TBP A;  3H1Z A;  3HS9 A;  5IYC P;  4ROE B;  1D3U A;  1YTB A;  1PCZ A;  1QN4 A;  1KYD A;  2MJ7 A;  3VN5 A;  5IYB P;  1JFI C;  1QN5 A;  1QN8 A;  1CDW A;  3ASM A;  1KY6 A;  2G30 A;  1QN9 A;  1TGH A;  1NVP A;  1C9B B;  1QNC A;  1QTP A;  2D0A A;  1NH2 A;  2IV8 A;  1VOL B;  4ROC B;  1MP9 A;  1VOK A;  1QNE A;  1QN6 A;  3HS8 A;  2D0B A;  1R4X A;  1QN7 A;  1E42 A;  3EIK A;  4WZS D;  1VTO A;  1B9K A;  1KYF A;  4B0A A; 
#chains in the Genus database with same CATH topology
 3EAY A;  1W80 A;  2OOY A;  4EJZ A;  1K2Y X;  3SNS A;  3I3W A;  2F7L A;  3DPT A;  1LWV A;  5IYD P;  3OC3 C;  3KTU A;  2QR1 A;  3H1Z A;  2QLV A;  2Y8Q A;  4ROE B;  4BJU A;  3OST A;  3DPU A;  1KYD A;  2FUV A;  2QRE A;  2ZFD B;  4IL8 A;  1YQM A;  2MZ8 A;  2NOB A;  4TPS A;  3I0W A;  2DKD A;  2R5X A;  2NLV A;  1N3A A;  2V8Q A;  4C7P A;  4Q11 A;  4I8O A;  2IV8 A;  2NOE A;  2NWV A;  1QNE A;  1KFI A;  3HS8 A;  2NOH A;  2D0B A;  1R4X A;  1QN7 A;  2PWW A;  4HJH A;  1Q9U A;  2HL9 A;  3OSE A;  3OCI A;  3CWU A;  1N39 A;  1QN3 A;  1LWY A;  2JPI A;  1C4G A;  1KY7 A;  2VJ0 A;  1NGM A;  3OSM A;  1RM1 A;  1YQL A;  1KYU A;  4EAI A;  1D3U A;  4MRQ A;  1EBM A;  2H5A X;  3CWA A;  4WX8 A;  5JMV D;  2Z0F A;  1T6A A;  1VKL A;  2HL8 A;  5IYB P;  1KY6 A;  3F0Z A;  3I0X A;  1UL7 A;  2O3O A;  1NVP A;  4QG5 A;  2Y8L A;  1C9B B;  4DUL A;  1QNC A;  2D0A A;  1VOL B;  1M5Q 1;  2NVM A;  5BMN A;  3RPJ A;  5F9C A;  3OGD A;  3KRM A;  5JN5 A;  4CFF A;  1PCM X;  1V5S A;  3IH7 A;  3OLP A;  1KFQ A;  2LAE A;  1YTF A;  5EPC A;  4B0A A;  1KO9 A;  3BKQ X;  2Z8U A;  3CWT A;  1P5D X;  2D0C A;  2IV9 A;  1UT7 A;  2JHJ A;  1AIS A;  1QNB A;  3N89 A;  1PZD A;  2DKC A;  2FKM X;  3HS9 A;  3T4N A;  3ENC A;  2YH5 A;  2DKA A;  1JFI C;  1QN5 A;  1QN8 A;  3ASM A;  3TDH A;  3C04 A;  2EHB D;  3UW2 A;  5KL0 A;  2I5W A;  1PCJ X;  1NH2 A;  2JOI A;  1MP9 A;  3PMG A;  4WXA A;  4ROC B;  1LWW A;  3OH6 A;  1XSZ A;  5BMP A;  1QN6 A;  1M3H A;  1E42 A;  4WZS D;  1N3C A;  1VTO A;  2JHN A;  2QRD A;  1B9K A;  1YQR A;  1KYF A;  4PY5 A;  2XHI A;  1YQK A;  1TUO A;  4EAJ A;  3CVT A;  1QTS A;  2FGT A;  3D7Q A;  1VTL E;  1P5G X;  2NOL A;  2QRC A;  4EAG A;  1M3Q A;  1TBA B;  1JDY A;  4D7Q A;  1FN7 A;  1QNA A;  3TE5 A;  1PVS A;  4ROD B;  1TBP A;  3RSM A;  5IYC P;  3NA5 A;  3D4V A;  3F10 A;  2OOX A;  2V92 A;  1PCZ A;  1DIZ A;  4D7R A;  1QN4 A;  2NOF A;  1WQA A;  2MJ7 A;  1J3M A;  3VN5 A;  4EAK A;  1HU0 A;  2NOI A;  1CDW A;  2HKP A;  3CVS A;  4EJY A;  1LXT A;  2G30 A;  1UT4 A;  2HZS A;  2V9J A;  2YA3 A;  4EAL A;  1QN9 A;  1TGH A;  3CWS A;  1EUV A;  1MPG A;  3CW7 A;  1QTP A;  1K35 A;  2FKF A;  3ENO C;  3ULX A;  2NOZ A;  1VOK A;  3OH9 A;  1WJW A;  3PDK A;  5AN4 A;  2HZM A;  2H4L X;  3EIK A;  1C47 A;  1YTB A;  5HSH A; 
#chains in the Genus database with same CATH homology
 1W80 A;  4EJZ A;  3SNS A;  3DPT A;  1LWV A;  5IYD P;  3OC3 C;  3KTU A;  3H1Z A;  4ROE B;  3OST A;  3DPU A;  1KYD A;  1YQM A;  2MZ8 A;  2NOB A;  4TPS A;  3I0W A;  1N3A A;  4Q11 A;  4I8O A;  2IV8 A;  2NOE A;  1QNE A;  3HS8 A;  2NOH A;  2D0B A;  1R4X A;  1QN7 A;  3OCI A;  1N39 A;  1QN3 A;  1LWY A;  1KY7 A;  2VJ0 A;  1NGM A;  3OSM A;  1RM1 A;  1YQL A;  1KYU A;  1D3U A;  1EBM A;  5IYB P;  1KY6 A;  3F0Z A;  3I0X A;  2O3O A;  1NVP A;  1C9B B;  1QNC A;  4DUL A;  2D0A A;  1VOL B;  3RPJ A;  3KRM A;  3IH7 A;  2LAE A;  1YTF A;  4B0A A;  1KO9 A;  2Z8U A;  2D0C A;  2IV9 A;  1UT7 A;  1AIS A;  1QNB A;  3N89 A;  1PZD A;  3HS9 A;  2YH5 A;  1JFI C;  1QN5 A;  1QN8 A;  3ASM A;  2I5W A;  1NH2 A;  2JOI A;  1MP9 A;  4ROC B;  1LWW A;  1QN6 A;  1M3H A;  1E42 A;  4WZS D;  1N3C A;  1VTO A;  1B9K A;  1YQR A;  1KYF A;  4PY5 A;  2XHI A;  1YQK A;  1QTS A;  2FGT A;  1VTL E;  2NOL A;  1M3Q A;  1TBA B;  1FN7 A;  1QNA A;  4ROD B;  1TBP A;  5IYC P;  3F10 A;  1PCZ A;  1QN4 A;  2NOF A;  2MJ7 A;  3VN5 A;  1HU0 A;  2NOI A;  1CDW A;  4EJY A;  2G30 A;  1UT4 A;  2HZS A;  1QN9 A;  1TGH A;  1QTP A;  3ULX A;  2NOZ A;  1VOK A;  5AN4 A;  2HZM A;  3EIK A;  1YTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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