1VQ6H

The structure of c-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA.
pubmed doi rcsb
total genus 37
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2004-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1vq6H00
1N8RJ 4IOAJ 3G6EH 5MLCO 3OW2H 4IOCJ 3CMEH 1WKIA 3I55H 1YJ9H 2QEXH 1KC8J 1VQPH 5H1SO 1Q86J 4WFBJ 2ZJPJ 4IO9J 5GAHN 2QA4H 5JVGJ 1JJ2H 5DM6J 2ZJRJ 3CD6H 3CCEH 4WCEJ 4UY8M 1K73J 3CCRH 1VQ9H 3G4SH 4WF9J 5AN9F 2OTLH 1YJWH 1VQ8H 3CCSH 1K9MJ 1YHQH 1Q81J 1YIJH 3J7ZM 1QVGH 1VQ5H 3PIPJ 1VQLH 1M90J 1VQ6H 3CPWH 5GAEN 1YITH 3PIOJ 4WFNJ 1Q82J 3CCJH 1S72H 3CCLH 3CCVH 2OTJH 2ZJQJ 1W2BH 1NJIJ 1VQ7H 3CC2H 1VQ4H 1VQMH 1Q7YJ 2PA2A 1M1KJ 5GADN 3CC7H 3G71H 3I56H 3CXCH 1VQKH 1VQNH 5HL7J 5DM7J 5GAGN 1KQSH 4U67J 1KD1J 3CMAH 1YJNH 1K8AJ 4WFAJ 3DLLJ 3CCQH 1QVFH 3CF5J 1YI2H 3CC4H 1Y69K 1VQOH 3CCUH 3CCMH 5JVHJ
chains in the Genus database with same CATH superfamily
1N8RJ 4IOAJ 3G6EH 1VLBA 3RPFA 4EADA 5MLCO 3OW2H 4IOCJ 3C2VA 1QPRA 1NVJA 3CMEH 3SR6C 1WKIA 3I55H 1SIJA 2QEXH 1YJ9H 1KC8J 1V97A 1VQPH 3TQVA 2B7PA 5H1SO 1ZXIB 3VMMA 5GAHN 4USAA 4WFBJ 2ZJPJ 4IO9J 1X1OA 5HULA 2QA4H 5JVGJ 1JJ2H 2DSJA 1N5WB 1QPNA 5DM6J 1OTPA 3NS1C 3WNZA 4GA5A 3WO0A 2E3TA 2I14A 1N61B 4KWVA 2ZJRJ 4GA6A 3BIIE 3CD6H 3EUB4 2I1OA 3FC4A 3CCEH 4WCEJ 1AZYA 1UOUA 4X46A 2WP4A 3C2FA 4UY8M 1K73J 2Q5WE 3FAHA 1SB3A 2W55B 3GNNA 3CCRH 3WO1A 3G4SH 4WF9J 1VQ9H 1JRPB 2J0FA 5AN9F 2OTLH 1YJWH 1VQ8H 2WK6A 5EP8A 2W3SB 5EY3A 3CCSH 3NVZC 4I9AA 1K9MJ 1YHQH 1Q81J 5AYYA 5JVHJ 1YIJH 1N5XA 3J7ZM 1YTKA 1NVIE 1QVGH 1VQ5H 3PIPJ 1VQLH 4C80A 3C2EA 4YYYA 1M90J 3AMZA 2QIEA 1VQ6H 3H5QA 4EAFA 5AYZA 3ETRC 3AN1A 3CPWH 5GAEN 1QPQA 2JBMA 1YITH 3PIOJ 4WFNJ 1BRWA 1Q82J 4KWWA 3NVWC 4XR5A 3CCJH 4GA4A 5AYXA 3B9JC 1S72H 3CCLH 3CCVH 1N63B 1Q86J 2OTJH 4YEKA 2ZJQJ 2W54B 1W2BH 1VDVA 1FMAE 2B7QA 1NJIJ 1FFVB 4LHMA 3CC2H 1VQ4H 1VQ7H 1VQMH 1Q7YJ 3AM9A 2PA2A 1M1KJ 4AP8A 5GADN 3CC7H 3C2RA 3NRZC 4US9A 1QAPA 5HUOA 4US8A 1FM0E 4C7ZA 3I56H 4C7YA 3G71H 3CXCH 2WK5A 1VQKH 1VQNH 3PAJA 5HL7J 5DM7J 2OMDA 3NVYC 1N62B 2TPTA 1O4UA 5GAGN 1KQSH 4U67J 1KD1J 2B7NA 3CMAH 1YJNH 4ZOHA 1K8AJ 3C2OA 1FIQC 1FFUB 3NVVC 1RM6A 4WFAJ 1FO4A 2W3RB 3DLLJ 3CCQH 5HUPA 1N60B 3L0GA 1QVFH 3CF5J 1WYGA 5MPOC 3CC4H 1YI2H 1Y69K 1VQOH 1DGJA 3CCUH 1JROB 1YTEA 3CCMH 1YTDA 1QPOA 3L4PA
chains in the Genus database with same CATH topology
1N8RJ 4IOAJ 3G6EH 5MLCO 3OW2H 4IOCJ 3CMEH 1WKIA 3I55H 1YJ9H 2QEXH 1KC8J 1VQPH 5H1SO 1Q86J 4WFBJ 2ZJPJ 4IO9J 5GAHN 2QA4H 5JVGJ 1JJ2H 5DM6J 2ZJRJ 3CD6H 3CCEH 4WCEJ 4UY8M 1K73J 3CCRH 1VQ9H 3G4SH 4WF9J 5AN9F 2OTLH 1YJWH 1VQ8H 3CCSH 1K9MJ 1YHQH 1Q81J 1YIJH 3J7ZM 1QVGH 1VQ5H 3PIPJ 1VQLH 1M90J 1VQ6H 3CPWH 5GAEN 1YITH 3PIOJ 4WFNJ 1Q82J 3CCJH 1S72H 3CCLH 3CCVH 2OTJH 2ZJQJ 1W2BH 1NJIJ 1VQ7H 3CC2H 1VQ4H 1VQMH 1Q7YJ 2PA2A 1M1KJ 5GADN 3CC7H 3G71H 3I56H 3CXCH 1VQKH 1VQNH 5HL7J 5DM7J 5GAGN 1KQSH 4U67J 1KD1J 3CMAH 1YJNH 1K8AJ 4WFAJ 3DLLJ 3CCQH 1QVFH 3CF5J 1YI2H 3CC4H 1Y69K 1VQOH 3CCUH 3CCMH 5JVHJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N8R J;  4IOA J;  3G6E H;  5MLC O;  3OW2 H;  4IOC J;  3CME H;  1WKI A;  3I55 H;  1YJ9 H;  2QEX H;  1KC8 J;  1VQP H;  5H1S O;  1Q86 J;  4WFB J;  2ZJP J;  4IO9 J;  5GAH N;  2QA4 H;  5JVG J;  1JJ2 H;  5DM6 J;  2ZJR J;  3CD6 H;  3CCE H;  4WCE J;  4UY8 M;  1K73 J;  3CCR H;  1VQ9 H;  3G4S H;  4WF9 J;  5AN9 F;  2OTL H;  1YJW H;  1VQ8 H;  3CCS H;  1K9M J;  1YHQ H;  1Q81 J;  1YIJ H;  3J7Z M;  1QVG H;  1VQ5 H;  3PIP J;  1VQL H;  1M90 J;  1VQ6 H;  3CPW H;  5GAE N;  1YIT H;  3PIO J;  4WFN J;  1Q82 J;  3CCJ H;  1S72 H;  3CCL H;  3CCV H;  2OTJ H;  2ZJQ J;  1W2B H;  1NJI J;  1VQ7 H;  3CC2 H;  1VQ4 H;  1VQM H;  1Q7Y J;  2PA2 A;  1M1K J;  5GAD N;  3CC7 H;  3G71 H;  3I56 H;  3CXC H;  1VQK H;  1VQN H;  5HL7 J;  5DM7 J;  5GAG N;  1KQS H;  4U67 J;  1KD1 J;  3CMA H;  1YJN H;  1K8A J;  4WFA J;  3DLL J;  3CCQ H;  1QVF H;  3CF5 J;  1YI2 H;  3CC4 H;  1Y69 K;  1VQO H;  3CCU H;  3CCM H;  5JVH J; 
#chains in the Genus database with same CATH topology
 1N8R J;  4IOA J;  3G6E H;  1VLB A;  3RPF A;  4EAD A;  5MLC O;  3OW2 H;  4IOC J;  3C2V A;  1QPR A;  1NVJ A;  3CME H;  3SR6 C;  1WKI A;  3I55 H;  1SIJ A;  2QEX H;  1YJ9 H;  1KC8 J;  1V97 A;  1VQP H;  3TQV A;  2B7P A;  5H1S O;  1ZXI B;  3VMM A;  5GAH N;  4USA A;  4WFB J;  2ZJP J;  4IO9 J;  1X1O A;  5HUL A;  2QA4 H;  5JVG J;  1JJ2 H;  2DSJ A;  1N5W B;  1QPN A;  5DM6 J;  1OTP A;  3NS1 C;  3WNZ A;  4GA5 A;  3WO0 A;  2E3T A;  2I14 A;  1N61 B;  4KWV A;  2ZJR J;  4GA6 A;  3BII E;  3CD6 H;  3EUB 4;  2I1O A;  3FC4 A;  3CCE H;  4WCE J;  1AZY A;  1UOU A;  4X46 A;  2WP4 A;  3C2F A;  4UY8 M;  1K73 J;  2Q5W E;  3FAH A;  1SB3 A;  2W55 B;  3GNN A;  3CCR H;  3WO1 A;  3G4S H;  4WF9 J;  1VQ9 H;  1JRP B;  2J0F A;  5AN9 F;  2OTL H;  1YJW H;  1VQ8 H;  2WK6 A;  5EP8 A;  2W3S B;  5EY3 A;  3CCS H;  3NVZ C;  4I9A A;  1K9M J;  1YHQ H;  1Q81 J;  5AYY A;  5JVH J;  1YIJ H;  1N5X A;  3J7Z M;  1YTK A;  1NVI E;  1QVG H;  1VQ5 H;  3PIP J;  1VQL H;  4C80 A;  3C2E A;  4YYY A;  1M90 J;  3AMZ A;  2QIE A;  1VQ6 H;  3H5Q A;  4EAF A;  5AYZ A;  3ETR C;  3AN1 A;  3CPW H;  5GAE N;  1QPQ A;  2JBM A;  1YIT H;  3PIO J;  4WFN J;  1BRW A;  1Q82 J;  4KWW A;  3NVW C;  4XR5 A;  3CCJ H;  4GA4 A;  5AYX A;  3B9J C;  1S72 H;  3CCL H;  3CCV H;  1N63 B;  1Q86 J;  2OTJ H;  4YEK A;  2ZJQ J;  2W54 B;  1W2B H;  1VDV A;  1FMA E;  2B7Q A;  1NJI J;  1FFV B;  4LHM A;  3CC2 H;  1VQ4 H;  1VQ7 H;  1VQM H;  1Q7Y J;  3AM9 A;  2PA2 A;  1M1K J;  4AP8 A;  5GAD N;  3CC7 H;  3C2R A;  3NRZ C;  4US9 A;  1QAP A;  5HUO A;  4US8 A;  1FM0 E;  4C7Z A;  3I56 H;  4C7Y A;  3G71 H;  3CXC H;  2WK5 A;  1VQK H;  1VQN H;  3PAJ A;  5HL7 J;  5DM7 J;  2OMD A;  3NVY C;  1N62 B;  2TPT A;  1O4U A;  5GAG N;  1KQS H;  4U67 J;  1KD1 J;  2B7N A;  3CMA H;  1YJN H;  4ZOH A;  1K8A J;  3C2O A;  1FIQ C;  1FFU B;  3NVV C;  1RM6 A;  4WFA J;  1FO4 A;  2W3R B;  3DLL J;  3CCQ H;  5HUP A;  1N60 B;  3L0G A;  1QVF H;  3CF5 J;  1WYG A;  5MPO C;  3CC4 H;  1YI2 H;  1Y69 K;  1VQO H;  1DGJ A;  3CCU H;  1JRO B;  1YTE A;  3CCM H;  1YTD A;  1QPO A;  3L4P A; 
#chains in the Genus database with same CATH homology
 1N8R J;  4IOA J;  3G6E H;  5MLC O;  3OW2 H;  4IOC J;  3CME H;  1WKI A;  3I55 H;  1YJ9 H;  2QEX H;  1KC8 J;  1VQP H;  5H1S O;  1Q86 J;  4WFB J;  2ZJP J;  4IO9 J;  5GAH N;  2QA4 H;  5JVG J;  1JJ2 H;  5DM6 J;  2ZJR J;  3CD6 H;  3CCE H;  4WCE J;  4UY8 M;  1K73 J;  3CCR H;  1VQ9 H;  3G4S H;  4WF9 J;  5AN9 F;  2OTL H;  1YJW H;  1VQ8 H;  3CCS H;  1K9M J;  1YHQ H;  1Q81 J;  1YIJ H;  3J7Z M;  1QVG H;  1VQ5 H;  3PIP J;  1VQL H;  1M90 J;  1VQ6 H;  3CPW H;  5GAE N;  1YIT H;  3PIO J;  4WFN J;  1Q82 J;  3CCJ H;  1S72 H;  3CCL H;  3CCV H;  2OTJ H;  2ZJQ J;  1W2B H;  1NJI J;  1VQ7 H;  3CC2 H;  1VQ4 H;  1VQM H;  1Q7Y J;  2PA2 A;  1M1K J;  5GAD N;  3CC7 H;  3G71 H;  3I56 H;  3CXC H;  1VQK H;  1VQN H;  5HL7 J;  5DM7 J;  5GAG N;  1KQS H;  4U67 J;  1KD1 J;  3CMA H;  1YJN H;  1K8A J;  4WFA J;  3DLL J;  3CCQ H;  1QVF H;  3CF5 J;  1YI2 H;  3CC4 H;  1Y69 K;  1VQO H;  3CCU H;  3CCM H;  5JVH J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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