1VQ6W

The structure of c-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA.
pubmed doi rcsb
total genus 48
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1vq6W02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1vq6W01
3CCMW 4WFAW 2ZJPW 4WFBW 5DM7W 2QEXW 1VQLW 1QVFV 1YHQW 1Q82X 3PIPW 3G4SW 1W2BV 3CD6W 5DM6W 1N8RX 3CF5W 3PIOW 3CC4W 1YJWW 1JJ2V 1VQNW 2OTJW 2ZJQW 1VQOW 2QA4W 3CCJW 4WFNW 1Q81X 1YJ9W 3G6EW 3CC7W 3I55W 4WCEW 3CCEW 1VQ4W 1S72W 1YITW 4IO9W 1KC8X 3J7ZZ 3CXCV 1K8AX 5GAEa 1KQSV 4IOAW 2OTLW 2ZJRW 1QVGV 3CCQW 1VQKW 1VQMW 1YI2W 3OW2V 3CCSW 3G71W 5GAHa 1VQ9W 5JVGW 1VQ8W 1BXYA 1KD1X 1M1KX 3DLLW 3CMAW 5HL7W 3I56W 3CMEW 4WF9W 1VQ5W 3CCVW 1Q86X 3CC2W 5GADa 1VQ7W 5GAGa 3CCLW 1VQ6W 1Q7YX 4U67W 5JVHW 3CCRW 1YIJW 1YJNW 3CCUW 1K73X 1K9MX 1NJIX 3CPWV 1VQPW 4IOCW 4UY8Z 1M90X
chains in the Genus database with same CATH superfamily
3CCMW 4WFAW 3O2OA 2ZJPW 1MBVB 3W7UA 4WFBW 5DM7W 1CTFA 3D3IA 2QEXW 3G3PA 1VQLW 3GQ0A 1QVFV 1YHQW 1Q82X 3PIPW 3G4SW 1W2BV 3CD6W 5DM6W 5GW7A 3W7SA 4CPKA 1N8RX 3CF5W 1MWSA 3PIOW 3CC4W 1YJWW 1JJ2V 5CA3A 1VQNW 2OTJW 2ZJQW 1VQOW 2QA4W 3CCJW 4WFNW 1Q81X 1YJ9W 2W9RA 3W7XA 4C1NA 1MWRA 3G6EW 3O2HA 3CC7W 3I55W 3O1FB 4WCEW 3CCEW 1LZWA 5M18A 1VQ4W 4BL3A 1S72W 1YITW 3ZG0A 4IO9W 1MBUC 1KC8X 3J7ZZ 1DD4A 3CXCV 5M1AA 1K8AX 5GAEa 1KQSV 1R6OC 4IOAW 2OTLW 2ZJRW 1QVGV 3G1BA 3CCQW 1VQKW 1MWUA 3ZG5A 1VQMW 1YI2W 2WA9A 3OW2V 1VQQA 3CCSW 3G71W 1RQVA 1VQ9W 3W7TA 5GAHa 5JVGW 3GQ1A 1MG9A 1VQ8W 1BXYA 4DKIA 3O2BA 1KD1X 1M1KX 3DLLW 3CMAW 5HL7W 4YKAA 3I56W 3CMEW 2WA8A 4WF9W 1VQ5W 1DD3A 3CCVW 3ZFZA 3GW1A 3O1FA 1Q86X 4CJNA 3CC2W 5GADa 1VQ7W 5GAGa 3CCLW 1VQ6W 1Q7YX 4U67W 5JVHW 3CCRW 3W7WA 1YIJW 1YJNW 3CCUW 5M19A 1K73X 1K9MX 4BL2A 3G19A 4YJXA 1NJIX 1MWTA 3CPWV 4YJMA 1RQSA 1RQUA 3DNJA 1VQPW 4IOCW 4UY8Z 1R6QC 1M90X 1MBXC
chains in the Genus database with same CATH topology
3CCMW 4WFAW 2ZJPW 4WFBW 5DM7W 2QEXW 1VQLW 1QVFV 1YHQW 1Q82X 3PIPW 3G4SW 1W2BV 3CD6W 5DM6W 1N8RX 3CF5W 3PIOW 3CC4W 1YJWW 1JJ2V 1VQNW 2OTJW 2ZJQW 1VQOW 2QA4W 3CCJW 4WFNW 1Q81X 1YJ9W 4C1NA 3G6EW 3CC7W 3I55W 4WCEW 3CCEW 1VQ4W 1S72W 1YITW 4IO9W 1KC8X 3J7ZZ 3CXCV 1K8AX 5GAEa 1KQSV 4IOAW 2OTLW 2ZJRW 1QVGV 3CCQW 1VQKW 1VQMW 1YI2W 3OW2V 3CCSW 3G71W 5GAHa 1VQ9W 5JVGW 1VQ8W 1BXYA 1KD1X 1M1KX 3DLLW 3CMAW 5HL7W 3I56W 3CMEW 4WF9W 1VQ5W 3CCVW 1Q86X 3CC2W 5GADa 1VQ7W 5GAGa 3CCLW 1VQ6W 1Q7YX 4U67W 5JVHW 3CCRW 1YIJW 1YJNW 3CCUW 1K73X 1K9MX 1NJIX 3CPWV 1VQPW 4IOCW 4UY8Z 1M90X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCM W;  4WFA W;  2ZJP W;  4WFB W;  5DM7 W;  2QEX W;  1VQL W;  1QVF V;  1YHQ W;  1Q82 X;  3PIP W;  3G4S W;  1W2B V;  3CD6 W;  5DM6 W;  1N8R X;  3CF5 W;  3PIO W;  3CC4 W;  1YJW W;  1JJ2 V;  1VQN W;  2OTJ W;  2ZJQ W;  1VQO W;  2QA4 W;  3CCJ W;  4WFN W;  1Q81 X;  1YJ9 W;  3G6E W;  3CC7 W;  3I55 W;  4WCE W;  3CCE W;  1VQ4 W;  1S72 W;  1YIT W;  4IO9 W;  1KC8 X;  3J7Z Z;  3CXC V;  1K8A X;  5GAE a;  1KQS V;  4IOA W;  2OTL W;  2ZJR W;  1QVG V;  3CCQ W;  1VQK W;  1VQM W;  1YI2 W;  3OW2 V;  3CCS W;  3G71 W;  5GAH a;  1VQ9 W;  5JVG W;  1VQ8 W;  1BXY A;  1KD1 X;  1M1K X;  3DLL W;  3CMA W;  5HL7 W;  3I56 W;  3CME W;  4WF9 W;  1VQ5 W;  3CCV W;  1Q86 X;  3CC2 W;  5GAD a;  1VQ7 W;  5GAG a;  3CCL W;  1VQ6 W;  1Q7Y X;  4U67 W;  5JVH W;  3CCR W;  1YIJ W;  1YJN W;  3CCU W;  1K73 X;  1K9M X;  1NJI X;  3CPW V;  1VQP W;  4IOC W;  4UY8 Z;  1M90 X; 
#chains in the Genus database with same CATH topology
 3CCM W;  4WFA W;  3O2O A;  2ZJP W;  1MBV B;  3W7U A;  4WFB W;  5DM7 W;  1CTF A;  3D3I A;  2QEX W;  3G3P A;  1VQL W;  3GQ0 A;  1QVF V;  1YHQ W;  1Q82 X;  3PIP W;  3G4S W;  1W2B V;  3CD6 W;  5DM6 W;  5GW7 A;  3W7S A;  4CPK A;  1N8R X;  3CF5 W;  1MWS A;  3PIO W;  3CC4 W;  1YJW W;  1JJ2 V;  5CA3 A;  1VQN W;  2OTJ W;  2ZJQ W;  1VQO W;  2QA4 W;  3CCJ W;  4WFN W;  1Q81 X;  1YJ9 W;  2W9R A;  3W7X A;  4C1N A;  1MWR A;  3G6E W;  3O2H A;  3CC7 W;  3I55 W;  3O1F B;  4WCE W;  3CCE W;  1LZW A;  5M18 A;  1VQ4 W;  4BL3 A;  1S72 W;  1YIT W;  3ZG0 A;  4IO9 W;  1MBU C;  1KC8 X;  3J7Z Z;  1DD4 A;  3CXC V;  5M1A A;  1K8A X;  5GAE a;  1KQS V;  1R6O C;  4IOA W;  2OTL W;  2ZJR W;  1QVG V;  3G1B A;  3CCQ W;  1VQK W;  1MWU A;  3ZG5 A;  1VQM W;  1YI2 W;  2WA9 A;  3OW2 V;  1VQQ A;  3CCS W;  3G71 W;  1RQV A;  1VQ9 W;  3W7T A;  5GAH a;  5JVG W;  3GQ1 A;  1MG9 A;  1VQ8 W;  1BXY A;  4DKI A;  3O2B A;  1KD1 X;  1M1K X;  3DLL W;  3CMA W;  5HL7 W;  4YKA A;  3I56 W;  3CME W;  2WA8 A;  4WF9 W;  1VQ5 W;  1DD3 A;  3CCV W;  3ZFZ A;  3GW1 A;  3O1F A;  1Q86 X;  4CJN A;  3CC2 W;  5GAD a;  1VQ7 W;  5GAG a;  3CCL W;  1VQ6 W;  1Q7Y X;  4U67 W;  5JVH W;  3CCR W;  3W7W A;  1YIJ W;  1YJN W;  3CCU W;  5M19 A;  1K73 X;  1K9M X;  4BL2 A;  3G19 A;  4YJX A;  1NJI X;  1MWT A;  3CPW V;  4YJM A;  1RQS A;  1RQU A;  3DNJ A;  1VQP W;  4IOC W;  4UY8 Z;  1R6Q C;  1M90 X;  1MBX C; 
#chains in the Genus database with same CATH homology
 3CCM W;  4WFA W;  2ZJP W;  4WFB W;  5DM7 W;  2QEX W;  1VQL W;  1QVF V;  1YHQ W;  1Q82 X;  3PIP W;  3G4S W;  1W2B V;  3CD6 W;  5DM6 W;  1N8R X;  3CF5 W;  3PIO W;  3CC4 W;  1YJW W;  1JJ2 V;  1VQN W;  2OTJ W;  2ZJQ W;  1VQO W;  2QA4 W;  3CCJ W;  4WFN W;  1Q81 X;  1YJ9 W;  4C1N A;  3G6E W;  3CC7 W;  3I55 W;  4WCE W;  3CCE W;  1VQ4 W;  1S72 W;  1YIT W;  4IO9 W;  1KC8 X;  3J7Z Z;  3CXC V;  1K8A X;  5GAE a;  1KQS V;  4IOA W;  2OTL W;  2ZJR W;  1QVG V;  3CCQ W;  1VQK W;  1VQM W;  1YI2 W;  3OW2 V;  3CCS W;  3G71 W;  5GAH a;  1VQ9 W;  5JVG W;  1VQ8 W;  1BXY A;  1KD1 X;  1M1K X;  3DLL W;  3CMA W;  5HL7 W;  3I56 W;  3CME W;  4WF9 W;  1VQ5 W;  3CCV W;  1Q86 X;  3CC2 W;  5GAD a;  1VQ7 W;  5GAG a;  3CCL W;  1VQ6 W;  1Q7Y X;  4U67 W;  5JVH W;  3CCR W;  1YIJ W;  1YJN W;  3CCU W;  1K73 X;  1K9M X;  1NJI X;  3CPW V;  1VQP W;  4IOC W;  4UY8 Z;  1M90 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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