1VQ9R

The structure of cca-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
pubmed doi rcsb
total genus 39
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 1vq9R00
1W2BQ 3CCQR 1VQOR 2ZJRP 1M1KS 1VQ4R 5GADT 5GAGT 4WFAP 1YJWR 1K9MS 1QVGQ 1VQNR 1VQ5R 1YJNR 1M90S 3CCJR 3CCRR 5DM6P 1K8AS 3CCLR 3OW2Q 4WFNP 3CCVR 1VQMR 3CC4R 1I4JA 3CCMR 3CCER 5DM7P 2ZJQP 1VQ7R 1Q7YS 5MLCU 3CCSR 1YHQR 3J7ZS 1VQ9R 5JVHP 3G4SR 5H1SU 4IOAP 3PIOP 2QEXR 1K73S 5JVGP 4V19W 4UY8S 1Q81S 4WCEP 5HL7P 3CPWQ 3CMER 1KC8S 1Q86S 2OTLR 4WFBP 1VQ8R 4WF9P 3G71R 1VQ6R 3CF5P 1YIJR 1KQSQ 5GAET 1BXEA 2QA4R 1YJ9R 3PIPP 3I55R 1Q82S 3CD6R 3CC2R 3DLLP 1VQKR 4U67P 1QVFQ 3CXCQ 1VQLR 3G6ER 3CCUR 1YITR 3CMAR 2ZJPP 2OTJR 1YI2R 4IOCP 1VQPR 1S72R 1KD1S 3I56R 5GAHT 1N8RS 3CC7R 1NJIS 4IO9P 1JJ2Q 3J7YT
chains in the Genus database with same CATH superfamily
1W2BQ 3CCQR 4MRTA 1VQOR 2ZJRP 1M1KS 3NE1A 1VQ4R 5GADT 5GAGT 4WFAP 1YJWR 3HQJA 1QR0A 1K9MS 1QVGQ 1VQNR 1VQ5R 2D0PA 1YJNR 2JBZA 1M90S 3CCJR 3CCRR 2WASB 5DM6P 1K8AS 2WDYA 3CCLR 3OW2Q 4DXEA 4WFNP 3CCVR 3QMNA 1VQMR 2BDDA 3CC4R 1I4JA 3CCMR 3NFDA 1F80A 3CCER 5DM7P 2ZJQP 1VQ7R 1Q7YS 5MLCU 1NBWA 3CCSR 1YHQR 3J7ZS 1VQ9R 5JVHP 1F7TA 1FTFA 2C43A 2CG5A 1FTEA 5H1SU 3G4SR 4IOAP 3PIOP 2QEXR 1K73S 5JVGP 4V19W 4UY8S 1Q81S 2BYDA 3HYKA 4WCEP 5HL7P 3CPWQ 4JM7A 2WATA 3CMER 1KC8S 4HC6A 1Q86S 2OTLR 4WFBP 1VQ8R 2WDOA 4WF9P 2WDSA 3G71R 1VQ6R 3CF5P 1YIJR 2WASA 1KQSQ 5CMOA 5GAET 1BXEA 2QG8A 2QA4R 1YJ9R 3PIPP 3I55R 1Q82S 3CD6R 3CC2R 3DLLP 3GWMA 1VQKR 4U67P 2JCAA 1QVFQ 3CXCQ 1VQLR 3G6ER 3CCUR 1YITR 3CMAR 2ZJPP 2OTJR 1YI2R 3H7QA 4IOCP 1F7LA 2D0OA 1VQPR 1S72R 1KD1S 3I56R 5GAHT 1FTHA 1N8RS 3CC7R 1NJIS 4IO9P 3NE9A 1JJ2Q 5CXDA 3J7YT 3NE3B
chains in the Genus database with same CATH topology
1W2BQ 3CCQR 1VQOR 2ZJRP 1M1KS 1VQ4R 5GADT 5GAGT 4WFAP 1YJWR 1K9MS 1QVGQ 1VQNR 1VQ5R 1YJNR 1M90S 3CCJR 3CCRR 5DM6P 1K8AS 3CCLR 3OW2Q 4WFNP 3CCVR 1VQMR 3CC4R 1I4JA 3CCMR 3CCER 5DM7P 2ZJQP 1VQ7R 1Q7YS 5MLCU 3CCSR 1YHQR 3J7ZS 1VQ9R 5JVHP 3G4SR 5H1SU 4IOAP 3PIOP 2QEXR 1K73S 5JVGP 4V19W 4UY8S 1Q81S 4WCEP 5HL7P 3CPWQ 3CMER 1KC8S 1Q86S 2OTLR 4WFBP 1VQ8R 4WF9P 3G71R 1VQ6R 3CF5P 1YIJR 1KQSQ 5GAET 1BXEA 2QA4R 1YJ9R 3PIPP 3I55R 1Q82S 3CD6R 3CC2R 3DLLP 1VQKR 4U67P 1QVFQ 3CXCQ 1VQLR 3G6ER 3CCUR 1YITR 3CMAR 2ZJPP 2OTJR 1YI2R 4IOCP 1VQPR 1S72R 1KD1S 3I56R 5GAHT 1N8RS 3CC7R 1NJIS 4IO9P 1JJ2Q 3J7YT
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W2B Q;  3CCQ R;  1VQO R;  2ZJR P;  1M1K S;  1VQ4 R;  5GAD T;  5GAG T;  4WFA P;  1YJW R;  1K9M S;  1QVG Q;  1VQN R;  1VQ5 R;  1YJN R;  1M90 S;  3CCJ R;  3CCR R;  5DM6 P;  1K8A S;  3CCL R;  3OW2 Q;  4WFN P;  3CCV R;  1VQM R;  3CC4 R;  1I4J A;  3CCM R;  3CCE R;  5DM7 P;  2ZJQ P;  1VQ7 R;  1Q7Y S;  5MLC U;  3CCS R;  1YHQ R;  3J7Z S;  1VQ9 R;  5JVH P;  3G4S R;  5H1S U;  4IOA P;  3PIO P;  2QEX R;  1K73 S;  5JVG P;  4V19 W;  4UY8 S;  1Q81 S;  4WCE P;  5HL7 P;  3CPW Q;  3CME R;  1KC8 S;  1Q86 S;  2OTL R;  4WFB P;  1VQ8 R;  4WF9 P;  3G71 R;  1VQ6 R;  3CF5 P;  1YIJ R;  1KQS Q;  5GAE T;  1BXE A;  2QA4 R;  1YJ9 R;  3PIP P;  3I55 R;  1Q82 S;  3CD6 R;  3CC2 R;  3DLL P;  1VQK R;  4U67 P;  1QVF Q;  3CXC Q;  1VQL R;  3G6E R;  3CCU R;  1YIT R;  3CMA R;  2ZJP P;  2OTJ R;  1YI2 R;  4IOC P;  1VQP R;  1S72 R;  1KD1 S;  3I56 R;  5GAH T;  1N8R S;  3CC7 R;  1NJI S;  4IO9 P;  1JJ2 Q;  3J7Y T; 
#chains in the Genus database with same CATH topology
 1W2B Q;  3CCQ R;  4MRT A;  1VQO R;  2ZJR P;  1M1K S;  3NE1 A;  1VQ4 R;  5GAD T;  5GAG T;  4WFA P;  1YJW R;  3HQJ A;  1QR0 A;  1K9M S;  1QVG Q;  1VQN R;  1VQ5 R;  2D0P A;  1YJN R;  2JBZ A;  1M90 S;  3CCJ R;  3CCR R;  2WAS B;  5DM6 P;  1K8A S;  2WDY A;  3CCL R;  3OW2 Q;  4DXE A;  4WFN P;  3CCV R;  3QMN A;  1VQM R;  2BDD A;  3CC4 R;  1I4J A;  3CCM R;  3NFD A;  1F80 A;  3CCE R;  5DM7 P;  2ZJQ P;  1VQ7 R;  1Q7Y S;  5MLC U;  1NBW A;  3CCS R;  1YHQ R;  3J7Z S;  1VQ9 R;  5JVH P;  1F7T A;  1FTF A;  2C43 A;  2CG5 A;  1FTE A;  5H1S U;  3G4S R;  4IOA P;  3PIO P;  2QEX R;  1K73 S;  5JVG P;  4V19 W;  4UY8 S;  1Q81 S;  2BYD A;  3HYK A;  4WCE P;  5HL7 P;  3CPW Q;  4JM7 A;  2WAT A;  3CME R;  1KC8 S;  4HC6 A;  1Q86 S;  2OTL R;  4WFB P;  1VQ8 R;  2WDO A;  4WF9 P;  2WDS A;  3G71 R;  1VQ6 R;  3CF5 P;  1YIJ R;  2WAS A;  1KQS Q;  5CMO A;  5GAE T;  1BXE A;  2QG8 A;  2QA4 R;  1YJ9 R;  3PIP P;  3I55 R;  1Q82 S;  3CD6 R;  3CC2 R;  3DLL P;  3GWM A;  1VQK R;  4U67 P;  2JCA A;  1QVF Q;  3CXC Q;  1VQL R;  3G6E R;  3CCU R;  1YIT R;  3CMA R;  2ZJP P;  2OTJ R;  1YI2 R;  3H7Q A;  4IOC P;  1F7L A;  2D0O A;  1VQP R;  1S72 R;  1KD1 S;  3I56 R;  5GAH T;  1FTH A;  1N8R S;  3CC7 R;  1NJI S;  4IO9 P;  3NE9 A;  1JJ2 Q;  5CXD A;  3J7Y T;  3NE3 B; 
#chains in the Genus database with same CATH homology
 1W2B Q;  3CCQ R;  1VQO R;  2ZJR P;  1M1K S;  1VQ4 R;  5GAD T;  5GAG T;  4WFA P;  1YJW R;  1K9M S;  1QVG Q;  1VQN R;  1VQ5 R;  1YJN R;  1M90 S;  3CCJ R;  3CCR R;  5DM6 P;  1K8A S;  3CCL R;  3OW2 Q;  4WFN P;  3CCV R;  1VQM R;  3CC4 R;  1I4J A;  3CCM R;  3CCE R;  5DM7 P;  2ZJQ P;  1VQ7 R;  1Q7Y S;  5MLC U;  3CCS R;  1YHQ R;  3J7Z S;  1VQ9 R;  5JVH P;  3G4S R;  5H1S U;  4IOA P;  3PIO P;  2QEX R;  1K73 S;  5JVG P;  4V19 W;  4UY8 S;  1Q81 S;  4WCE P;  5HL7 P;  3CPW Q;  3CME R;  1KC8 S;  1Q86 S;  2OTL R;  4WFB P;  1VQ8 R;  4WF9 P;  3G71 R;  1VQ6 R;  3CF5 P;  1YIJ R;  1KQS Q;  5GAE T;  1BXE A;  2QA4 R;  1YJ9 R;  3PIP P;  3I55 R;  1Q82 S;  3CD6 R;  3CC2 R;  3DLL P;  1VQK R;  4U67 P;  1QVF Q;  3CXC Q;  1VQL R;  3G6E R;  3CCU R;  1YIT R;  3CMA R;  2ZJP P;  2OTJ R;  1YI2 R;  4IOC P;  1VQP R;  1S72 R;  1KD1 S;  3I56 R;  5GAH T;  1N8R S;  3CC7 R;  1NJI S;  4IO9 P;  1JJ2 Q;  3J7Y T; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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