1VQLK

The structure of the transition state analogue "dcsn" bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
pubmed doi rcsb
total genus 31
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 1vqlK00
3CCQK 1YHQK 1NJIL 3CD6K 1VQ5K 4U67H 1Q86L 3CCVK 5GADL 3CMEK 2QEXK 1VQLK 1QVFJ 1VQKK 5HL7H 3CCMK 1WHIA 1VQ7K 2ZJPH 1K8AL 3CMAK 1JJ2J 5MLCM 1Q81L 1Q82L 2OTJK 3CCJK 2OTLK 3CC2K 1KQSJ 3PIOH 3CCSK 1M90L 1N8RL 1VQPK 4WCEH 3CC7K 3G6EK 2QA4K 4WFAH 3G71K 5JVHH 2ZJQH 1YJNK 3CCRK 5DM6H 5GAEL 3J7ZK 5H1SM 3G4SK 1YJ9K 5GAHL 5AN9E 1K9ML 1KD1L 3I56K 3J7YL 1VQMK 1VQ4K 3CCLK 3DLLH 4UY8K 1VQ6K 5JVGH 2ZJRH 3PIPH 3CCUK 1YJWK 4WFBH 4WFNH 1VQ9K 5GAGL 1VQOK 3OW2J 1QVGJ 4WF9H 3CXCJ 1VQNK 1YI2K 3CPWJ 4IOCH 1Q7YL 3CC4K 1S72K 5DM7H 1VQ8K 4V19O 4IO9H 1W2BJ 1YIJK 1K73L 3CCEK 1M1KL 4IOAH 3CF5H 3I55K 1YITK 1KC8L
chains in the Genus database with same CATH superfamily
3CCQK 1YHQK 1NJIL 3CD6K 1VQ5K 4U67H 1Q86L 3CCVK 5GADL 3CMEK 2QEXK 1VQLK 1QVFJ 1VQKK 5HL7H 3CCMK 1WHIA 1VQ7K 2ZJPH 1K8AL 3CMAK 1JJ2J 5MLCM 1Q81L 1Q82L 2OTJK 3CCJK 2OTLK 3CC2K 1KQSJ 3PIOH 3CCSK 1M90L 1N8RL 1VQPK 4WCEH 3CC7K 3G6EK 2QA4K 4WFAH 3G71K 5JVHH 2ZJQH 1YJNK 3CCRK 5DM6H 5GAEL 3J7ZK 5H1SM 3G4SK 1YJ9K 5GAHL 5AN9E 1K9ML 1KD1L 3I56K 3J7YL 1VQMK 1VQ4K 3CCLK 3DLLH 4UY8K 1VQ6K 5JVGH 2ZJRH 3PIPH 3CCUK 1YJWK 4WFBH 4WFNH 1VQ9K 5GAGL 1VQOK 3OW2J 1QVGJ 4WF9H 3CXCJ 1VQNK 1YI2K 3CPWJ 4IOCH 1Q7YL 3CC4K 1S72K 5DM7H 1VQ8K 4V19O 4IO9H 1W2BJ 1YIJK 1K73L 3CCEK 1M1KL 4IOAH 3CF5H 3I55K 1YITK 1KC8L
chains in the Genus database with same CATH topology
3CCQK 1YHQK 1NJIL 3CD6K 1VQ5K 4U67H 1Q86L 3CCVK 5GADL 3CMEK 2QEXK 1VQLK 1QVFJ 1VQKK 5HL7H 3CCMK 1WHIA 1VQ7K 2ZJPH 1K8AL 3CMAK 1JJ2J 5MLCM 1Q81L 1Q82L 2OTJK 3CCJK 2OTLK 3CC2K 1KQSJ 3PIOH 3CCSK 1M90L 1N8RL 1VQPK 4WCEH 3CC7K 3G6EK 2QA4K 4WFAH 3G71K 5JVHH 2ZJQH 1YJNK 3CCRK 5DM6H 5GAEL 3J7ZK 5H1SM 3G4SK 1YJ9K 5GAHL 5AN9E 1K9ML 1KD1L 3I56K 3J7YL 1VQMK 1VQ4K 3CCLK 3DLLH 4UY8K 1VQ6K 5JVGH 2ZJRH 3PIPH 3CCUK 1YJWK 4WFBH 4WFNH 1VQ9K 5GAGL 1VQOK 3OW2J 1QVGJ 4WF9H 3CXCJ 1VQNK 1YI2K 3CPWJ 4IOCH 1Q7YL 3CC4K 1S72K 5DM7H 1VQ8K 4V19O 4IO9H 1W2BJ 1YIJK 1K73L 3CCEK 1M1KL 4IOAH 3CF5H 3I55K 1YITK 1KC8L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCQ K;  1YHQ K;  1NJI L;  3CD6 K;  1VQ5 K;  4U67 H;  1Q86 L;  3CCV K;  5GAD L;  3CME K;  2QEX K;  1VQL K;  1QVF J;  1VQK K;  5HL7 H;  3CCM K;  1WHI A;  1VQ7 K;  2ZJP H;  1K8A L;  3CMA K;  1JJ2 J;  5MLC M;  1Q81 L;  1Q82 L;  2OTJ K;  3CCJ K;  2OTL K;  3CC2 K;  1KQS J;  3PIO H;  3CCS K;  1M90 L;  1N8R L;  1VQP K;  4WCE H;  3CC7 K;  3G6E K;  2QA4 K;  4WFA H;  3G71 K;  5JVH H;  2ZJQ H;  1YJN K;  3CCR K;  5DM6 H;  5GAE L;  3J7Z K;  5H1S M;  3G4S K;  1YJ9 K;  5GAH L;  5AN9 E;  1K9M L;  1KD1 L;  3I56 K;  3J7Y L;  1VQM K;  1VQ4 K;  3CCL K;  3DLL H;  4UY8 K;  1VQ6 K;  5JVG H;  2ZJR H;  3PIP H;  3CCU K;  1YJW K;  4WFB H;  4WFN H;  1VQ9 K;  5GAG L;  1VQO K;  3OW2 J;  1QVG J;  4WF9 H;  3CXC J;  1VQN K;  1YI2 K;  3CPW J;  4IOC H;  1Q7Y L;  3CC4 K;  1S72 K;  5DM7 H;  1VQ8 K;  4V19 O;  4IO9 H;  1W2B J;  1YIJ K;  1K73 L;  3CCE K;  1M1K L;  4IOA H;  3CF5 H;  3I55 K;  1YIT K;  1KC8 L; 
#chains in the Genus database with same CATH topology
 3CCQ K;  1YHQ K;  1NJI L;  3CD6 K;  1VQ5 K;  4U67 H;  1Q86 L;  3CCV K;  5GAD L;  3CME K;  2QEX K;  1VQL K;  1QVF J;  1VQK K;  5HL7 H;  3CCM K;  1WHI A;  1VQ7 K;  2ZJP H;  1K8A L;  3CMA K;  1JJ2 J;  5MLC M;  1Q81 L;  1Q82 L;  2OTJ K;  3CCJ K;  2OTL K;  3CC2 K;  1KQS J;  3PIO H;  3CCS K;  1M90 L;  1N8R L;  1VQP K;  4WCE H;  3CC7 K;  3G6E K;  2QA4 K;  4WFA H;  3G71 K;  5JVH H;  2ZJQ H;  1YJN K;  3CCR K;  5DM6 H;  5GAE L;  3J7Z K;  5H1S M;  3G4S K;  1YJ9 K;  5GAH L;  5AN9 E;  1K9M L;  1KD1 L;  3I56 K;  3J7Y L;  1VQM K;  1VQ4 K;  3CCL K;  3DLL H;  4UY8 K;  1VQ6 K;  5JVG H;  2ZJR H;  3PIP H;  3CCU K;  1YJW K;  4WFB H;  4WFN H;  1VQ9 K;  5GAG L;  1VQO K;  3OW2 J;  1QVG J;  4WF9 H;  3CXC J;  1VQN K;  1YI2 K;  3CPW J;  4IOC H;  1Q7Y L;  3CC4 K;  1S72 K;  5DM7 H;  1VQ8 K;  4V19 O;  4IO9 H;  1W2B J;  1YIJ K;  1K73 L;  3CCE K;  1M1K L;  4IOA H;  3CF5 H;  3I55 K;  1YIT K;  1KC8 L; 
#chains in the Genus database with same CATH homology
 3CCQ K;  1YHQ K;  1NJI L;  3CD6 K;  1VQ5 K;  4U67 H;  1Q86 L;  3CCV K;  5GAD L;  3CME K;  2QEX K;  1VQL K;  1QVF J;  1VQK K;  5HL7 H;  3CCM K;  1WHI A;  1VQ7 K;  2ZJP H;  1K8A L;  3CMA K;  1JJ2 J;  5MLC M;  1Q81 L;  1Q82 L;  2OTJ K;  3CCJ K;  2OTL K;  3CC2 K;  1KQS J;  3PIO H;  3CCS K;  1M90 L;  1N8R L;  1VQP K;  4WCE H;  3CC7 K;  3G6E K;  2QA4 K;  4WFA H;  3G71 K;  5JVH H;  2ZJQ H;  1YJN K;  3CCR K;  5DM6 H;  5GAE L;  3J7Z K;  5H1S M;  3G4S K;  1YJ9 K;  5GAH L;  5AN9 E;  1K9M L;  1KD1 L;  3I56 K;  3J7Y L;  1VQM K;  1VQ4 K;  3CCL K;  3DLL H;  4UY8 K;  1VQ6 K;  5JVG H;  2ZJR H;  3PIP H;  3CCU K;  1YJW K;  4WFB H;  4WFN H;  1VQ9 K;  5GAG L;  1VQO K;  3OW2 J;  1QVG J;  4WF9 H;  3CXC J;  1VQN K;  1YI2 K;  3CPW J;  4IOC H;  1Q7Y L;  3CC4 K;  1S72 K;  5DM7 H;  1VQ8 K;  4V19 O;  4IO9 H;  1W2B J;  1YIJ K;  1K73 L;  3CCE K;  1M1K L;  4IOA H;  3CF5 H;  3I55 K;  1YIT K;  1KC8 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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