1VQLU

The structure of the transition state analogue "dcsn" bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
pubmed doi rcsb
total genus 11
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 1vqlU00
1Q86V 1Q81V 2OTLU 1Q7YV 1YIJU 3CCUU 1N8RV 1K9MV 3I56U 1JJ2T 3CMAU 1KD1V 1VQPU 1NJIV 1KC8V 1VQOU 1S72U 3CCLU 1VQ4U 3G71U 3CCJU 1Q82V 1K8AV 3CCEU 3CC7U 2QA4U 1M90V 1VQMU 3G4SU 3CXCT 3CCRU 1VQ8U 3OW2T 1K73V 2QEXU 1YHQU 1W2BT 1KQST 1YITU 3I55U 1YJWU 2OTJU 1YI2U 3CMEU 3CCVU 1VQLU 3CC2U 1M1KV 1VQ6U 3CCQU 3CCSU 1VQ5U 1VQ9U 1VQNU 3CC4U 3CD6U 1QVGT 1VQKU 1VQ7U 1YJNU 3CCMU 1YJ9U 5AN9G 1QVFT 3CPWT 3G6EU
chains in the Genus database with same CATH superfamily
3CCUU 1N8RV 3ABOA 1VQ4U 3G71U 3CXCT 2OTJU 5H1SY 1VQ9U 1VQNU 3CCMU 1YJ9U 5AN9G 3G6EU 1Q81V 2OTLU 1YIJU 1K9MV 1KD1V 1VQPU 1KC8V 1VQOU 1S72U 3CCLU 1K8AV 3CCEU 1VQ8U 3ABSA 2QEXU 1W2BT 1YJWU 5MLCY 3CCQU 3CD6U 1YJNU 3ABQA 2QEZA 1Q7YV 2JZ6A 3I56U 3CMAU 1NJIV 4UY8X 3G4SU 1JJDA 3OW2T 1KQST 1YITU 3I55U 5DM6U 3CMEU 3CCVU 1VQLU 3CC2U 1VQ6U 3CCSU 3AO0A 1VQKU 1QVFT 1Q86V 1JJ2T 3CCJU 1Q82V 3CC7U 2QA4U 1M90V 1VQMU 3CCRU 1K73V 3ABRA 1YHQU 1YI2U 1M1KV 1VQ5U 3CC4U 1QVGT 3ANYA 1VQ7U 3CPWT 3J7ZX
chains in the Genus database with same CATH topology
1Q86V 1Q81V 2OTLU 1Q7YV 1YIJU 3CCUU 1N8RV 1K9MV 3I56U 1JJ2T 3CMAU 1KD1V 1VQPU 1NJIV 1KC8V 1VQOU 1S72U 3CCLU 1VQ4U 3G71U 3CCJU 1Q82V 1K8AV 3CCEU 3CC7U 2QA4U 1M90V 1VQMU 3G4SU 3CXCT 3CCRU 1VQ8U 1JJDA 3OW2T 1K73V 2QEXU 1YHQU 1W2BT 1KQST 1YITU 3I55U 1YJWU 2OTJU 1YI2U 3CMEU 3CCVU 1VQLU 3CC2U 1M1KV 1VQ6U 3CCQU 3CCSU 1VQ5U 1VQ9U 1VQNU 3CC4U 3CD6U 1QVGT 1VQKU 1VQ7U 1YJNU 3CCMU 1YJ9U 5AN9G 1QVFT 3CPWT 3G6EU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q86 V;  1Q81 V;  2OTL U;  1Q7Y V;  1YIJ U;  3CCU U;  1N8R V;  1K9M V;  3I56 U;  1JJ2 T;  3CMA U;  1KD1 V;  1VQP U;  1NJI V;  1KC8 V;  1VQO U;  1S72 U;  3CCL U;  1VQ4 U;  3G71 U;  3CCJ U;  1Q82 V;  1K8A V;  3CCE U;  3CC7 U;  2QA4 U;  1M90 V;  1VQM U;  3G4S U;  3CXC T;  3CCR U;  1VQ8 U;  3OW2 T;  1K73 V;  2QEX U;  1YHQ U;  1W2B T;  1KQS T;  1YIT U;  3I55 U;  1YJW U;  2OTJ U;  1YI2 U;  3CME U;  3CCV U;  1VQL U;  3CC2 U;  1M1K V;  1VQ6 U;  3CCQ U;  3CCS U;  1VQ5 U;  1VQ9 U;  1VQN U;  3CC4 U;  3CD6 U;  1QVG T;  1VQK U;  1VQ7 U;  1YJN U;  3CCM U;  1YJ9 U;  5AN9 G;  1QVF T;  3CPW T;  3G6E U; 
#chains in the Genus database with same CATH topology
 3CCU U;  1N8R V;  3ABO A;  1VQ4 U;  3G71 U;  3CXC T;  2OTJ U;  5H1S Y;  1VQ9 U;  1VQN U;  3CCM U;  1YJ9 U;  5AN9 G;  3G6E U;  1Q81 V;  2OTL U;  1YIJ U;  1K9M V;  1KD1 V;  1VQP U;  1KC8 V;  1VQO U;  1S72 U;  3CCL U;  1K8A V;  3CCE U;  1VQ8 U;  3ABS A;  2QEX U;  1W2B T;  1YJW U;  5MLC Y;  3CCQ U;  3CD6 U;  1YJN U;  3ABQ A;  2QEZ A;  1Q7Y V;  2JZ6 A;  3I56 U;  3CMA U;  1NJI V;  4UY8 X;  3G4S U;  1JJD A;  3OW2 T;  1KQS T;  1YIT U;  3I55 U;  5DM6 U;  3CME U;  3CCV U;  1VQL U;  3CC2 U;  1VQ6 U;  3CCS U;  3AO0 A;  1VQK U;  1QVF T;  1Q86 V;  1JJ2 T;  3CCJ U;  1Q82 V;  3CC7 U;  2QA4 U;  1M90 V;  1VQM U;  3CCR U;  1K73 V;  3ABR A;  1YHQ U;  1YI2 U;  1M1K V;  1VQ5 U;  3CC4 U;  1QVG T;  3ANY A;  1VQ7 U;  3CPW T;  3J7Z X; 
#chains in the Genus database with same CATH homology
 1Q86 V;  1Q81 V;  2OTL U;  1Q7Y V;  1YIJ U;  3CCU U;  1N8R V;  1K9M V;  3I56 U;  1JJ2 T;  3CMA U;  1KD1 V;  1VQP U;  1NJI V;  1KC8 V;  1VQO U;  1S72 U;  3CCL U;  1VQ4 U;  3G71 U;  3CCJ U;  1Q82 V;  1K8A V;  3CCE U;  3CC7 U;  2QA4 U;  1M90 V;  1VQM U;  3G4S U;  3CXC T;  3CCR U;  1VQ8 U;  1JJD A;  3OW2 T;  1K73 V;  2QEX U;  1YHQ U;  1W2B T;  1KQS T;  1YIT U;  3I55 U;  1YJW U;  2OTJ U;  1YI2 U;  3CME U;  3CCV U;  1VQL U;  3CC2 U;  1M1K V;  1VQ6 U;  3CCQ U;  3CCS U;  1VQ5 U;  1VQ9 U;  1VQN U;  3CC4 U;  3CD6 U;  1QVG T;  1VQK U;  1VQ7 U;  1YJN U;  3CCM U;  1YJ9 U;  5AN9 G;  1QVF T;  3CPW T;  3G6E U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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