1VQOE

The structure of ccpmn bound to the large ribosomal subunit haloarcula marismortui
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
pubmed doi rcsb
total genus 38
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1vqoE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1vqoE01
5HL7E 1VQ4E 4IOAE 1VQLE 3CCQE 4WF9E 4WCEE 1QVGE 1Q82G 1YJNE 1VQ7E 3PIOE 1JJ2E 1N8RG 4WFAE 1VQOE 2CQLA 4WFNE 3I56E 5GAHG 5H1SI 3CCJE 1VQ8E 3CD6E 5DM6E 1NJIG 3CCSE 1VQ6E 4IOCE 4WFBE 1VQ9E 1KC8G 1M1KG 3G6EE 2QEXE 3PIPE 3G4SE 1W2BE 1QVFE 3CF5E 1YJ9E 1KQSE 2ZJRE 1Q86G 1YITE 1S72E 5GADG 5GAGG 1YIJE 1VQ5E 3G71E 1K9MG 3CCME 3CCLE 2QA4E 5MLCH 3CC7E 5JVHE 2OTLE 4IO9E 1Q7YG 1RL6A 3CMAE 3CC4E 1VQPE 4UY8G 1VQNE 1KD1G 2ZJQE 5DM7E 1YHQE 3CXCE 3CCUE 3I55E 2OTJE 3OW2E 1Q81G 1VQKE 4U67E 1K8AG 1YI2E 3CMEE 5AN9B 1VQME 3CCVE 3CPWE 1M90G 3CCEE 3J7ZG 5GAEG 5JVGE 2ZJPE 3CCRE 1K73G 1YJWE 3DLLE 3CC2E
chains in the Genus database with same CATH superfamily
5HL7E 1VQ4E 4IOAE 1VQLE 3CCQE 2OL8O 4WF9E 2OL7A 4WCEE 1QVGE 3CKFA 1Q82G 5B10O 1YJNE 1VQ7E 3PIOE 1P4PA 2OY1O 3IG9A 1JJ2E 1N8RG 4WFAE 1VQOE 2CQLA 4WFNE 3I56E 5GAHG 5H1SI 3CCJE 1VQ8E 3CD6E 5DM6E 1NJIG 3AUMO 3CCSE 2OY8A 2AF5A 1VQ6E 4IOCE 4WFBE 3EC5A 1VQ9E 1KC8G 1M1KG 3G6EE 2QEXE 3PIPE 3G4SE 1W2BE 1QVFE 2OY5O 1FJ1E 3CF5E 1YJ9E 2I5VO 3CKGA 1KQSE 2ZJRE 1Q86G 1YITE 1S72E 5B3MO 5GADG 5GAGG 2PI3O 5B2AO 1YIJE 1VQ5E 2FKGA 3G71E 1K9MG 3IGEA 3CCME 3CCLE 2QA4E 5MLCH 3CC7E 5JVHE 2OTLE 4IO9E 1Q7YG 1RL6A 3CMAE 3CC4E 1VQPE 4UY8G 1VQNE 1KD1G 2ZJQE 1OSPO 5DM7E 1YHQE 3CXCE 3CCUE 3I55E 2OYBO 2HKDA 2I5ZO 2OL6O 2OTJE 3OW2E 1Q81G 1VQKE 4U67E 1K8AG 1YI2E 3CMEE 2G8CO 5AN9B 1VQME 2OY7A 3CCVE 2FKJA 3CPWE 1M90G 3CCEE 3J7ZG 5GAEG 5JVGE 2ZJPE 1RJLC 3CCRE 1K73G 1YJWE 5B11O 3DLLE 3CC2E
chains in the Genus database with same CATH topology
5HL7E 1VQ4E 4IOAE 1VQLE 3CCQE 4WF9E 4WCEE 1QVGE 1Q82G 1YJNE 1VQ7E 3PIOE 1JJ2E 1N8RG 4WFAE 1VQOE 2CQLA 4WFNE 3I56E 5GAHG 5H1SI 3CCJE 1VQ8E 3CD6E 5DM6E 1NJIG 3CCSE 1VQ6E 4IOCE 4WFBE 1VQ9E 1KC8G 1M1KG 3G6EE 2QEXE 3PIPE 3G4SE 1W2BE 1QVFE 3CF5E 1YJ9E 1KQSE 2ZJRE 1Q86G 1YITE 1S72E 5GADG 5GAGG 1YIJE 1VQ5E 3G71E 1K9MG 3CCME 3CCLE 2QA4E 5MLCH 3CC7E 5JVHE 2OTLE 4IO9E 1Q7YG 1RL6A 3CMAE 3CC4E 1VQPE 4UY8G 1VQNE 1KD1G 2ZJQE 5DM7E 1YHQE 3CXCE 3CCUE 3I55E 2OTJE 3OW2E 1Q81G 1VQKE 4U67E 1K8AG 1YI2E 3CMEE 5AN9B 1VQME 3CCVE 3CPWE 1M90G 3CCEE 3J7ZG 5GAEG 5JVGE 2ZJPE 3CCRE 1K73G 1YJWE 3DLLE 3CC2E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL7 E;  1VQ4 E;  4IOA E;  1VQL E;  3CCQ E;  4WF9 E;  4WCE E;  1QVG E;  1Q82 G;  1YJN E;  1VQ7 E;  3PIO E;  1JJ2 E;  1N8R G;  4WFA E;  1VQO E;  2CQL A;  4WFN E;  3I56 E;  5GAH G;  5H1S I;  3CCJ E;  1VQ8 E;  3CD6 E;  5DM6 E;  1NJI G;  3CCS E;  1VQ6 E;  4IOC E;  4WFB E;  1VQ9 E;  1KC8 G;  1M1K G;  3G6E E;  2QEX E;  3PIP E;  3G4S E;  1W2B E;  1QVF E;  3CF5 E;  1YJ9 E;  1KQS E;  2ZJR E;  1Q86 G;  1YIT E;  1S72 E;  5GAD G;  5GAG G;  1YIJ E;  1VQ5 E;  3G71 E;  1K9M G;  3CCM E;  3CCL E;  2QA4 E;  5MLC H;  3CC7 E;  5JVH E;  2OTL E;  4IO9 E;  1Q7Y G;  1RL6 A;  3CMA E;  3CC4 E;  1VQP E;  4UY8 G;  1VQN E;  1KD1 G;  2ZJQ E;  5DM7 E;  1YHQ E;  3CXC E;  3CCU E;  3I55 E;  2OTJ E;  3OW2 E;  1Q81 G;  1VQK E;  4U67 E;  1K8A G;  1YI2 E;  3CME E;  5AN9 B;  1VQM E;  3CCV E;  3CPW E;  1M90 G;  3CCE E;  3J7Z G;  5GAE G;  5JVG E;  2ZJP E;  3CCR E;  1K73 G;  1YJW E;  3DLL E;  3CC2 E; 
#chains in the Genus database with same CATH topology
 5HL7 E;  1VQ4 E;  4IOA E;  1VQL E;  3CCQ E;  2OL8 O;  4WF9 E;  2OL7 A;  4WCE E;  1QVG E;  3CKF A;  1Q82 G;  5B10 O;  1YJN E;  1VQ7 E;  3PIO E;  1P4P A;  2OY1 O;  3IG9 A;  1JJ2 E;  1N8R G;  4WFA E;  1VQO E;  2CQL A;  4WFN E;  3I56 E;  5GAH G;  5H1S I;  3CCJ E;  1VQ8 E;  3CD6 E;  5DM6 E;  1NJI G;  3AUM O;  3CCS E;  2OY8 A;  2AF5 A;  1VQ6 E;  4IOC E;  4WFB E;  3EC5 A;  1VQ9 E;  1KC8 G;  1M1K G;  3G6E E;  2QEX E;  3PIP E;  3G4S E;  1W2B E;  1QVF E;  2OY5 O;  1FJ1 E;  3CF5 E;  1YJ9 E;  2I5V O;  3CKG A;  1KQS E;  2ZJR E;  1Q86 G;  1YIT E;  1S72 E;  5B3M O;  5GAD G;  5GAG G;  2PI3 O;  5B2A O;  1YIJ E;  1VQ5 E;  2FKG A;  3G71 E;  1K9M G;  3IGE A;  3CCM E;  3CCL E;  2QA4 E;  5MLC H;  3CC7 E;  5JVH E;  2OTL E;  4IO9 E;  1Q7Y G;  1RL6 A;  3CMA E;  3CC4 E;  1VQP E;  4UY8 G;  1VQN E;  1KD1 G;  2ZJQ E;  1OSP O;  5DM7 E;  1YHQ E;  3CXC E;  3CCU E;  3I55 E;  2OYB O;  2HKD A;  2I5Z O;  2OL6 O;  2OTJ E;  3OW2 E;  1Q81 G;  1VQK E;  4U67 E;  1K8A G;  1YI2 E;  3CME E;  2G8C O;  5AN9 B;  1VQM E;  2OY7 A;  3CCV E;  2FKJ A;  3CPW E;  1M90 G;  3CCE E;  3J7Z G;  5GAE G;  5JVG E;  2ZJP E;  1RJL C;  3CCR E;  1K73 G;  1YJW E;  5B11 O;  3DLL E;  3CC2 E; 
#chains in the Genus database with same CATH homology
 5HL7 E;  1VQ4 E;  4IOA E;  1VQL E;  3CCQ E;  4WF9 E;  4WCE E;  1QVG E;  1Q82 G;  1YJN E;  1VQ7 E;  3PIO E;  1JJ2 E;  1N8R G;  4WFA E;  1VQO E;  2CQL A;  4WFN E;  3I56 E;  5GAH G;  5H1S I;  3CCJ E;  1VQ8 E;  3CD6 E;  5DM6 E;  1NJI G;  3CCS E;  1VQ6 E;  4IOC E;  4WFB E;  1VQ9 E;  1KC8 G;  1M1K G;  3G6E E;  2QEX E;  3PIP E;  3G4S E;  1W2B E;  1QVF E;  3CF5 E;  1YJ9 E;  1KQS E;  2ZJR E;  1Q86 G;  1YIT E;  1S72 E;  5GAD G;  5GAG G;  1YIJ E;  1VQ5 E;  3G71 E;  1K9M G;  3CCM E;  3CCL E;  2QA4 E;  5MLC H;  3CC7 E;  5JVH E;  2OTL E;  4IO9 E;  1Q7Y G;  1RL6 A;  3CMA E;  3CC4 E;  1VQP E;  4UY8 G;  1VQN E;  1KD1 G;  2ZJQ E;  5DM7 E;  1YHQ E;  3CXC E;  3CCU E;  3I55 E;  2OTJ E;  3OW2 E;  1Q81 G;  1VQK E;  4U67 E;  1K8A G;  1YI2 E;  3CME E;  5AN9 B;  1VQM E;  3CCV E;  3CPW E;  1M90 G;  3CCE E;  3J7Z G;  5GAE G;  5JVG E;  2ZJP E;  3CCR E;  1K73 G;  1YJW E;  3DLL E;  3CC2 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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