1VR8A

Crystal structure of gtp binding regulator (tm1622) from thermotoga maritima at 1.75 a resolution
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
138
structure length
135
Chain Sequence
KIHHHHHHPPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVLDLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEMKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords GTP binding regulator
publication title Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 A resolution reveals a fold similar to the Ran-binding protein Mog1p.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 33
structure length 135
sequence length 138
ec nomenclature
pdb deposition date 2005-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11586 DUF3242 Protein of unknown function (DUF3242)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.20 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A TM1622-like 1vr8A00
1VR8A
chains in the Genus database with same CATH superfamily
1TU1A 2VT8A 2VU4A 4UI2D 4RTIA 4N7SB 3WA5B 3BCYA 3V7BA 4BQ8C 4BQ6D 1V2BA 4OUHA 3NR5A 1JHSA 4M5FB 3LYDA 2XB3A 4LUQC 4L9HA 4RTHA 4N88B 4L9CA 4ESQA 1EQ6A 4N80B 3HLZA 1VR8A 3JCUP 2LNJA
chains in the Genus database with same CATH topology
1VR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VR8 A; 
#chains in the Genus database with same CATH topology
 1TU1 A;  2VT8 A;  2VU4 A;  4UI2 D;  4RTI A;  4N7S B;  3WA5 B;  3BCY A;  3V7B A;  4BQ8 C;  4BQ6 D;  1V2B A;  4OUH A;  3NR5 A;  1JHS A;  4M5F B;  3LYD A;  2XB3 A;  4LUQ C;  4L9H A;  4RTH A;  4N88 B;  4L9C A;  4ESQ A;  1EQ6 A;  4N80 B;  3HLZ A;  1VR8 A;  3JCU P;  2LNJ A; 
#chains in the Genus database with same CATH homology
 1VR8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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