1W1KA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase: ile238thr mutant
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKTAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Laboratory-Evolved Vanillyl-Alcohol Oxidase Produces Natural Vanillin
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 182
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2004-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1w1kA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1kA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1kA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1kA03
3TSJA 3JS8A 5D79A 3S1FA 5FXPA 1I19A 2R8DA 4MLAA 1HSKA 2MBRA 3W8ZA 1DIIA 4PVKA 4PWBA 5ADZA 1N62C 3TSHA 3NVWB 3FW8A 5FXDA 1WYGA 1E8GA 2VFSA 1E0YA 4OALA 3HRDC 4JB1A 2O3GA 3C0PA 4DNSA 1N5XA 1DZNA 1QLTA 1SB3B 3NVZB 2RK5A 2P3HA 2PLSA 3W8XA 1W1MA 1UXYA 1DIQA 4O95A 1AHUA 1JROA 1N61C 1VDVA 2VFTA 3AMZA 5G5HB 3PM9A 5FXEA 2VFUA 3FW7A 1FFUC 5AE1A 3ETRB 5AE2A 5HMRA 2BVGA 1VAOA 1N5WC 4JAYA 3LLBA 1N63C 5HQXA 3GSYA 4BCAA 2YVSA 3FWAA 2W54A 5G5GB 4BC7A 1FIQB 1W1QA 3NVVB 3DQ0A 3SR6B 1W1SA 3I99A 4BBYA 4PVEA 4PYTA 2I0KA 3D2DA 3AM9A 1FFVC 1W1OA 3B9JB 5HHZA 2E3TA 3S1EA 2VFRA 2OAIA 1F0XA 1W1JA 4BC9A 2W3SA 3NRZB 2BVFA 2BVHA 3LAEA 3BW7A 3FW9A 1E8HA 2EXRA 3EUB3 3S1DA 1JRPA 1RM6B 2P4PA 3KJMA 4ML8A 2NQWA 4HG0A 1FO4A 1ZXIC 2QKNA 2GQTA 1T3QC 3VTEA 1N60C 2W55A 4PVJA 3AN1A 3NVYB 1V97A 3W8WA 1ZR6A 2AXRA 2VAOA 5AE3A 2Q85A 2Q4WA 1W1RA 1AHVA 5FXFA 4PWCA 4EC3A 1MBTA 4PZFA 1E8FA 3TX1A 1WVEA 4PVHA 4ZOHB 3NS1B 3D2JA 3DEDA 3S1CA 1MBBA 4XLOA 2R2ZA 2VFVA 1W1LA 2QPMA 2W3RA 4UD8A 2GQUA 1QLUA 2PLIA 1AHZA 1WVFA 1W1KA 3D2HA 2P13A
chains in the Genus database with same CATH superfamily
3TSJA 3JS8A 5D79A 3S1FA 5FXPA 1I19A 3EJDB 2R8DA 5I1WA 4MLAA 1HSKA 2MBRA 3W8ZA 1DIIA 4PVKA 4PWBA 5ADZA 1N62C 3TSHA 3NVWB 3FW8A 5FXDA 3PQBA 1WYGA 1E8GA 2VFSA 1E0YA 4OALA 3HRDC 4JB1A 2O3GA 3C0PA 4DNSA 1N5XA 1DZNA 2WDWA 1QLTA 1SB3B 3NVZB 2RK5A 2P3HA 2PLSA 3W8XA 1W1MA 2UUVA 1UXYA 1DIQA 4O95A 1AHUA 1JROA 1N61C 1VDVA 2Y3RA 2UUUA 2VFTA 3RJAA 3AMZA 5L6FA 5G5HB 3PM9A 5I1VA 5FXEA 2VFUA 3FW7A 1FFUC 5AE1A 3ETRB 5AE2A 5HMRA 2BVGA 1VAOA 1N5WC 4JAYA 3LLBA 1N63C 5HQXA 3GSYA 4BCAA 2YVSA 3FWAA 2W54A 5G5GB 4BC7A 2IPIA 1FIQB 1W1QA 3RJ8A 3NVVB 3DQ0A 3SR6B 1W1SA 3I99A 4BBYA 4PVEA 4PYTA 2I0KA 3D2DA 3AM9A 1FFVC 1W1OA 3B9JB 5HHZA 2E3TA 3S1EA 2VFRA 2Y4GA 2OAIA 1F0XA 1W1JA 4BC9A 5L6GA 2W3SA 3POPA 3NRZB 2BVFA 2BVHA 5AWVA 3LAEA 5K8EA 3BW7A 3FW9A 1E8HA 2EXRA 3EUB3 3S1DA 1JRPA 1RM6B 2P4PA 3KJMA 4ML8A 2NQWA 2Y08A 4HG0A 1FO4A 1ZXIC 2QKNA 2GQTA 1T3QC 3VTEA 1N60C 2W55A 4PVJA 3AN1A 3NVYB 1V97A 3W8WA 1ZR6A 2AXRA 2VAOA 5AE3A 2Q85A 2Q4WA 1W1RA 1AHVA 5FXFA 4PWCA 4EC3A 1MBTA 4PZFA 1E8FA 3TX1A 1WVEA 4PVHA 4ZOHB 2Y3SA 3NS1B 3D2JA 3EJBB 3S1CA 1MBBA 3DEDA 3HSUA 4XLOA 2R2ZA 2VFVA 1W1LA 2QPMA 2W3RA 4UD8A 2GQUA 1QLUA 2PLIA 1AHZA 1WVFA 3EJEB 1W1KA 3D2HA 2P13A
chains in the Genus database with same CATH topology
3TSJA 3JS8A 5D79A 3S1FA 5FXPA 1I19A 5I1WA 2R8DA 4MLAA 1HSKA 2MBRA 3W8ZA 1DIIA 4PVKA 4PWBA 5ADZA 1N62C 3TSHA 3NVWB 3FW8A 5FXDA 3PQBA 1WYGA 1E8GA 2VFSA 1E0YA 4OALA 3HRDC 4JB1A 2O3GA 3C0PA 4DNSA 1N5XA 1DZNA 2WDWA 1QLTA 1SB3B 3NVZB 2RK5A 2P3HA 2PLSA 3W8XA 1W1MA 2UUVA 1UXYA 1DIQA 4O95A 1AHUA 1JROA 1N61C 1VDVA 2Y3RA 2UUUA 2VFTA 3RJAA 3AMZA 5L6FA 5G5HB 3PM9A 5I1VA 5FXEA 2VFUA 3FW7A 1FFUC 5AE1A 3ETRB 5AE2A 5HMRA 2BVGA 1VAOA 1N5WC 4JAYA 3LLBA 1N63C 5HQXA 3GSYA 4BCAA 2YVSA 3FWAA 2W54A 5G5GB 4BC7A 2IPIA 1FIQB 1W1QA 3RJ8A 3NVVB 3DQ0A 3SR6B 1W1SA 3I99A 4BBYA 4PVEA 4PYTA 2I0KA 3D2DA 3AM9A 1FFVC 1W1OA 3B9JB 5HHZA 2E3TA 3S1EA 2VFRA 2Y4GA 2OAIA 1F0XA 1W1JA 4BC9A 5L6GA 2W3SA 3POPA 3NRZB 2BVFA 2BVHA 5AWVA 3LAEA 5K8EA 3BW7A 3FW9A 1E8HA 2EXRA 3EUB3 3S1DA 1JRPA 1RM6B 2P4PA 3KJMA 4ML8A 2NQWA 2Y08A 4HG0A 1FO4A 1ZXIC 2QKNA 2GQTA 1T3QC 3VTEA 1N60C 2W55A 4PVJA 3AN1A 3NVYB 1V97A 3W8WA 1ZR6A 2AXRA 2VAOA 5AE3A 2Q85A 2Q4WA 1W1RA 1AHVA 5FXFA 4PWCA 4EC3A 1MBTA 4PZFA 1E8FA 3TX1A 1WVEA 4PVHA 4ZOHB 2Y3SA 3NS1B 3D2JA 3DEDA 3S1CA 1MBBA 3HSUA 4XLOA 2R2ZA 2VFVA 1W1LA 2QPMA 2W3RA 4UD8A 2GQUA 1QLUA 2PLIA 1AHZA 1WVFA 1W1KA 3D2HA 2P13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TSJ A;  3JS8 A;  5D79 A;  3S1F A;  5FXP A;  1I19 A;  2R8D A;  4MLA A;  1HSK A;  2MBR A;  3W8Z A;  1DII A;  4PVK A;  4PWB A;  5ADZ A;  1N62 C;  3TSH A;  3NVW B;  3FW8 A;  5FXD A;  1WYG A;  1E8G A;  2VFS A;  1E0Y A;  4OAL A;  3HRD C;  4JB1 A;  2O3G A;  3C0P A;  4DNS A;  1N5X A;  1DZN A;  1QLT A;  1SB3 B;  3NVZ B;  2RK5 A;  2P3H A;  2PLS A;  3W8X A;  1W1M A;  1UXY A;  1DIQ A;  4O95 A;  1AHU A;  1JRO A;  1N61 C;  1VDV A;  2VFT A;  3AMZ A;  5G5H B;  3PM9 A;  5FXE A;  2VFU A;  3FW7 A;  1FFU C;  5AE1 A;  3ETR B;  5AE2 A;  5HMR A;  2BVG A;  1VAO A;  1N5W C;  4JAY A;  3LLB A;  1N63 C;  5HQX A;  3GSY A;  4BCA A;  2YVS A;  3FWA A;  2W54 A;  5G5G B;  4BC7 A;  1FIQ B;  1W1Q A;  3NVV B;  3DQ0 A;  3SR6 B;  1W1S A;  3I99 A;  4BBY A;  4PVE A;  4PYT A;  2I0K A;  3D2D A;  3AM9 A;  1FFV C;  1W1O A;  3B9J B;  5HHZ A;  2E3T A;  3S1E A;  2VFR A;  2OAI A;  1F0X A;  1W1J A;  4BC9 A;  2W3S A;  3NRZ B;  2BVF A;  2BVH A;  3LAE A;  3BW7 A;  3FW9 A;  1E8H A;  2EXR A;  3EUB 3;  3S1D A;  1JRP A;  1RM6 B;  2P4P A;  3KJM A;  4ML8 A;  2NQW A;  4HG0 A;  1FO4 A;  1ZXI C;  2QKN A;  2GQT A;  1T3Q C;  3VTE A;  1N60 C;  2W55 A;  4PVJ A;  3AN1 A;  3NVY B;  1V97 A;  3W8W A;  1ZR6 A;  2AXR A;  2VAO A;  5AE3 A;  2Q85 A;  2Q4W A;  1W1R A;  1AHV A;  5FXF A;  4PWC A;  4EC3 A;  1MBT A;  4PZF A;  1E8F A;  3TX1 A;  1WVE A;  4PVH A;  4ZOH B;  3NS1 B;  3D2J A;  3DED A;  3S1C A;  1MBB A;  4XLO A;  2R2Z A;  2VFV A;  1W1L A;  2QPM A;  2W3R A;  4UD8 A;  2GQU A;  1QLU A;  2PLI A;  1AHZ A;  1WVF A;  1W1K A;  3D2H A;  2P13 A; 
#chains in the Genus database with same CATH topology
 3TSJ A;  3JS8 A;  5D79 A;  3S1F A;  5FXP A;  1I19 A;  3EJD B;  2R8D A;  5I1W A;  4MLA A;  1HSK A;  2MBR A;  3W8Z A;  1DII A;  4PVK A;  4PWB A;  5ADZ A;  1N62 C;  3TSH A;  3NVW B;  3FW8 A;  5FXD A;  3PQB A;  1WYG A;  1E8G A;  2VFS A;  1E0Y A;  4OAL A;  3HRD C;  4JB1 A;  2O3G A;  3C0P A;  4DNS A;  1N5X A;  1DZN A;  2WDW A;  1QLT A;  1SB3 B;  3NVZ B;  2RK5 A;  2P3H A;  2PLS A;  3W8X A;  1W1M A;  2UUV A;  1UXY A;  1DIQ A;  4O95 A;  1AHU A;  1JRO A;  1N61 C;  1VDV A;  2Y3R A;  2UUU A;  2VFT A;  3RJA A;  3AMZ A;  5L6F A;  5G5H B;  3PM9 A;  5I1V A;  5FXE A;  2VFU A;  3FW7 A;  1FFU C;  5AE1 A;  3ETR B;  5AE2 A;  5HMR A;  2BVG A;  1VAO A;  1N5W C;  4JAY A;  3LLB A;  1N63 C;  5HQX A;  3GSY A;  4BCA A;  2YVS A;  3FWA A;  2W54 A;  5G5G B;  4BC7 A;  2IPI A;  1FIQ B;  1W1Q A;  3RJ8 A;  3NVV B;  3DQ0 A;  3SR6 B;  1W1S A;  3I99 A;  4BBY A;  4PVE A;  4PYT A;  2I0K A;  3D2D A;  3AM9 A;  1FFV C;  1W1O A;  3B9J B;  5HHZ A;  2E3T A;  3S1E A;  2VFR A;  2Y4G A;  2OAI A;  1F0X A;  1W1J A;  4BC9 A;  5L6G A;  2W3S A;  3POP A;  3NRZ B;  2BVF A;  2BVH A;  5AWV A;  3LAE A;  5K8E A;  3BW7 A;  3FW9 A;  1E8H A;  2EXR A;  3EUB 3;  3S1D A;  1JRP A;  1RM6 B;  2P4P A;  3KJM A;  4ML8 A;  2NQW A;  2Y08 A;  4HG0 A;  1FO4 A;  1ZXI C;  2QKN A;  2GQT A;  1T3Q C;  3VTE A;  1N60 C;  2W55 A;  4PVJ A;  3AN1 A;  3NVY B;  1V97 A;  3W8W A;  1ZR6 A;  2AXR A;  2VAO A;  5AE3 A;  2Q85 A;  2Q4W A;  1W1R A;  1AHV A;  5FXF A;  4PWC A;  4EC3 A;  1MBT A;  4PZF A;  1E8F A;  3TX1 A;  1WVE A;  4PVH A;  4ZOH B;  2Y3S A;  3NS1 B;  3D2J A;  3EJB B;  3S1C A;  1MBB A;  3DED A;  3HSU A;  4XLO A;  2R2Z A;  2VFV A;  1W1L A;  2QPM A;  2W3R A;  4UD8 A;  2GQU A;  1QLU A;  2PLI A;  1AHZ A;  1WVF A;  3EJE B;  1W1K A;  3D2H A;  2P13 A; 
#chains in the Genus database with same CATH homology
 3TSJ A;  3JS8 A;  5D79 A;  3S1F A;  5FXP A;  1I19 A;  5I1W A;  2R8D A;  4MLA A;  1HSK A;  2MBR A;  3W8Z A;  1DII A;  4PVK A;  4PWB A;  5ADZ A;  1N62 C;  3TSH A;  3NVW B;  3FW8 A;  5FXD A;  3PQB A;  1WYG A;  1E8G A;  2VFS A;  1E0Y A;  4OAL A;  3HRD C;  4JB1 A;  2O3G A;  3C0P A;  4DNS A;  1N5X A;  1DZN A;  2WDW A;  1QLT A;  1SB3 B;  3NVZ B;  2RK5 A;  2P3H A;  2PLS A;  3W8X A;  1W1M A;  2UUV A;  1UXY A;  1DIQ A;  4O95 A;  1AHU A;  1JRO A;  1N61 C;  1VDV A;  2Y3R A;  2UUU A;  2VFT A;  3RJA A;  3AMZ A;  5L6F A;  5G5H B;  3PM9 A;  5I1V A;  5FXE A;  2VFU A;  3FW7 A;  1FFU C;  5AE1 A;  3ETR B;  5AE2 A;  5HMR A;  2BVG A;  1VAO A;  1N5W C;  4JAY A;  3LLB A;  1N63 C;  5HQX A;  3GSY A;  4BCA A;  2YVS A;  3FWA A;  2W54 A;  5G5G B;  4BC7 A;  2IPI A;  1FIQ B;  1W1Q A;  3RJ8 A;  3NVV B;  3DQ0 A;  3SR6 B;  1W1S A;  3I99 A;  4BBY A;  4PVE A;  4PYT A;  2I0K A;  3D2D A;  3AM9 A;  1FFV C;  1W1O A;  3B9J B;  5HHZ A;  2E3T A;  3S1E A;  2VFR A;  2Y4G A;  2OAI A;  1F0X A;  1W1J A;  4BC9 A;  5L6G A;  2W3S A;  3POP A;  3NRZ B;  2BVF A;  2BVH A;  5AWV A;  3LAE A;  5K8E A;  3BW7 A;  3FW9 A;  1E8H A;  2EXR A;  3EUB 3;  3S1D A;  1JRP A;  1RM6 B;  2P4P A;  3KJM A;  4ML8 A;  2NQW A;  2Y08 A;  4HG0 A;  1FO4 A;  1ZXI C;  2QKN A;  2GQT A;  1T3Q C;  3VTE A;  1N60 C;  2W55 A;  4PVJ A;  3AN1 A;  3NVY B;  1V97 A;  3W8W A;  1ZR6 A;  2AXR A;  2VAO A;  5AE3 A;  2Q85 A;  2Q4W A;  1W1R A;  1AHV A;  5FXF A;  4PWC A;  4EC3 A;  1MBT A;  4PZF A;  1E8F A;  3TX1 A;  1WVE A;  4PVH A;  4ZOH B;  2Y3S A;  3NS1 B;  3D2J A;  3DED A;  3S1C A;  1MBB A;  3HSU A;  4XLO A;  2R2Z A;  2VFV A;  1W1L A;  2QPM A;  2W3R A;  4UD8 A;  2GQU A;  1QLU A;  2PLI A;  1AHZ A;  1WVF A;  1W1K A;  3D2H A;  2P13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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