1W1OA

Native cytokinin dehydrogenase
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
495
structure length
479
Chain Sequence
b'ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CYTOKININ DEHYDROGENASE 1
publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 166
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1oA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1oA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1oA03
2VAOA 3AM9A 3FW9A 2RK5A 3NRZB 2P3HA 1QLUA 1E8FA 1W1JA 2QPMA 3S1EA 4PZFA 5HMRA 3W8ZA 2VFSA 3D2JA 2R8DA 3LAEA 2W55A 1AHUA 2AXRA 4PVKA 3S1DA 5G5GB 2W54A 5FXEA 1AHVA 1ZR6A 2VFRA 3S1CA 2EXRA 3GSYA 1RM6B 1V97A 1FFVC 3KJMA 3NS1B 3W8WA 1FFUC 1E0YA 2VFVA 3BW7A 1WVEA 3DEDA 4PVEA 3C0PA 1N5XA 4O95A 4PYTA 2GQUA 2PLSA 1I19A 4PWBA 2Q85A 3VTEA 2VFTA 1W1LA 1W1SA 3SR6B 3D2DA 1MBBA 1FIQB 1VAOA 4JAYA 4BC7A 1W1OA 1AHZA 5ADZA 1DIQA 3FW7A 3HRDC 1HSKA 3ETRB 2R2ZA 3NVZB 1WVFA 2BVGA 5AE1A 3TSHA 1W1KA 3AN1A 4PWCA 1F0XA 3AMZA 1W1RA 3D2HA 1SB3B 5FXDA 3W8XA 4PVHA 1FO4A 5G5HB 3TX1A 2P13A 5AE2A 2GQTA 2I0KA 3NVYB 1JRPA 1N62C 2E3TA 3I99A 1DZNA 1W1MA 4XLOA 1T3QC 1DIIA 3TSJA 2QKNA 4JB1A 3FWAA 4DNSA 2BVHA 1E8GA 3PM9A 4OALA 1N5WC 2VFUA 4ZOHB 2Q4WA 3DQ0A 4PVJA 4UD8A 1VDVA 2OAIA 5FXFA 4BCAA 4BC9A 4MLAA 3JS8A 2W3SA 3B9JB 1W1QA 2W3RA 3S1FA 2MBRA 5HQXA 2P4PA 2O3GA 4EC3A 5HHZA 3EUB3 2NQWA 3FW8A 1ZXIC 2BVFA 1N61C 1E8HA 4BBYA 1N63C 5D79A 1N60C 4ML8A 5AE3A 5FXPA 2PLIA 3NVWB 2YVSA 1QLTA 1JROA 1WYGA 3NVVB 1UXYA 4HG0A 1MBTA 3LLBA
chains in the Genus database with same CATH superfamily
2VAOA 3AM9A 3FW9A 2RK5A 3NRZB 2P3HA 1QLUA 1E8FA 1W1JA 2QPMA 3S1EA 4PZFA 5HMRA 3W8ZA 2VFSA 3D2JA 2R8DA 3LAEA 2W55A 1AHUA 2AXRA 4PVKA 3S1DA 5G5GB 2W54A 5FXEA 1AHVA 1ZR6A 2VFRA 3S1CA 2EXRA 3GSYA 1RM6B 1V97A 1FFVC 3KJMA 3NS1B 3W8WA 1FFUC 1E0YA 2VFVA 3BW7A 1WVEA 3DEDA 4PVEA 2IPIA 3C0PA 1N5XA 4O95A 4PYTA 2GQUA 2PLSA 1I19A 4PWBA 3EJDB 2Q85A 3VTEA 2VFTA 1W1LA 1W1SA 3SR6B 3D2DA 1MBBA 1FIQB 1VAOA 4JAYA 4BC7A 1W1OA 1AHZA 5ADZA 1DIQA 5I1WA 3FW7A 3HRDC 1HSKA 3ETRB 2R2ZA 3NVZB 1WVFA 2BVGA 5AE1A 2UUUA 3TSHA 3RJ8A 1W1KA 3AN1A 4PWCA 1F0XA 3AMZA 1W1RA 2Y3RA 3D2HA 1SB3B 5FXDA 3W8XA 4PVHA 1FO4A 2Y4GA 5G5HB 3TX1A 2P13A 5AE2A 3POPA 2GQTA 2I0KA 3NVYB 1JRPA 5L6FA 1N62C 2E3TA 3I99A 3PQBA 1DZNA 1W1MA 4XLOA 1T3QC 1DIIA 2WDWA 3TSJA 2QKNA 4JB1A 3FWAA 4DNSA 2BVHA 1E8GA 3EJEB 3PM9A 3HSUA 4OALA 5L6GA 1N5WC 2VFUA 4ZOHB 2Q4WA 5K8EA 3DQ0A 4PVJA 4UD8A 1VDVA 5I1VA 2OAIA 5FXFA 4BCAA 4BC9A 4MLAA 5AWVA 3JS8A 2W3SA 3B9JB 2UUVA 1W1QA 2W3RA 3S1FA 2MBRA 5HQXA 2P4PA 2O3GA 4EC3A 2Y08A 5HHZA 3EUB3 2NQWA 3FW8A 1ZXIC 2BVFA 3EJBB 1N61C 2Y3SA 3RJAA 1E8HA 4BBYA 1N63C 5D79A 1N60C 4ML8A 5AE3A 5FXPA 3NVWB 2PLIA 2YVSA 1QLTA 1JROA 1WYGA 3NVVB 1UXYA 4HG0A 1MBTA 3LLBA
chains in the Genus database with same CATH topology
2VAOA 3AM9A 3FW9A 2RK5A 3NRZB 2P3HA 1QLUA 1E8FA 1W1JA 2QPMA 3S1EA 4PZFA 5HMRA 3W8ZA 2VFSA 3D2JA 2R8DA 3LAEA 2W55A 1AHUA 2AXRA 4PVKA 3S1DA 5G5GB 2W54A 5FXEA 1AHVA 1ZR6A 2VFRA 3S1CA 2EXRA 3GSYA 1RM6B 1V97A 1FFVC 3KJMA 3NS1B 3W8WA 1FFUC 1E0YA 2VFVA 3BW7A 1WVEA 3DEDA 4PVEA 2IPIA 3C0PA 1N5XA 4O95A 4PYTA 2GQUA 2PLSA 1I19A 4PWBA 2Q85A 3VTEA 2VFTA 1W1LA 1W1SA 3SR6B 3D2DA 1MBBA 1FIQB 1VAOA 4JAYA 4BC7A 1W1OA 1AHZA 5ADZA 1DIQA 5I1WA 3FW7A 3HRDC 1HSKA 3ETRB 2R2ZA 3NVZB 1WVFA 2BVGA 5AE1A 2UUUA 3TSHA 3RJ8A 1W1KA 3AN1A 4PWCA 1F0XA 3AMZA 1W1RA 2Y3RA 3D2HA 1SB3B 5FXDA 3W8XA 4PVHA 1FO4A 2Y4GA 5G5HB 3TX1A 2P13A 5AE2A 3POPA 2GQTA 2I0KA 3NVYB 1JRPA 5L6FA 1N62C 2E3TA 3I99A 3PQBA 1DZNA 1W1MA 4XLOA 1T3QC 1DIIA 2WDWA 3TSJA 2QKNA 4JB1A 3FWAA 4DNSA 2BVHA 1E8GA 3PM9A 3HSUA 4OALA 5L6GA 1N5WC 2VFUA 4ZOHB 2Q4WA 5K8EA 3DQ0A 4PVJA 4UD8A 1VDVA 5I1VA 2OAIA 5FXFA 4BCAA 4BC9A 4MLAA 5AWVA 3JS8A 2W3SA 3B9JB 2UUVA 1W1QA 2W3RA 3S1FA 2MBRA 5HQXA 2P4PA 2O3GA 4EC3A 2Y08A 5HHZA 3EUB3 2NQWA 3FW8A 1ZXIC 2BVFA 2Y3SA 1N61C 3RJAA 1E8HA 4BBYA 1N63C 5D79A 1N60C 4ML8A 5AE3A 5FXPA 2PLIA 3NVWB 2YVSA 1QLTA 1JROA 1WYGA 3NVVB 1UXYA 4HG0A 1MBTA 3LLBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VAO A;  3AM9 A;  3FW9 A;  2RK5 A;  3NRZ B;  2P3H A;  1QLU A;  1E8F A;  1W1J A;  2QPM A;  3S1E A;  4PZF A;  5HMR A;  3W8Z A;  2VFS A;  3D2J A;  2R8D A;  3LAE A;  2W55 A;  1AHU A;  2AXR A;  4PVK A;  3S1D A;  5G5G B;  2W54 A;  5FXE A;  1AHV A;  1ZR6 A;  2VFR A;  3S1C A;  2EXR A;  3GSY A;  1RM6 B;  1V97 A;  1FFV C;  3KJM A;  3NS1 B;  3W8W A;  1FFU C;  1E0Y A;  2VFV A;  3BW7 A;  1WVE A;  3DED A;  4PVE A;  3C0P A;  1N5X A;  4O95 A;  4PYT A;  2GQU A;  2PLS A;  1I19 A;  4PWB A;  2Q85 A;  3VTE A;  2VFT A;  1W1L A;  1W1S A;  3SR6 B;  3D2D A;  1MBB A;  1FIQ B;  1VAO A;  4JAY A;  4BC7 A;  1W1O A;  1AHZ A;  5ADZ A;  1DIQ A;  3FW7 A;  3HRD C;  1HSK A;  3ETR B;  2R2Z A;  3NVZ B;  1WVF A;  2BVG A;  5AE1 A;  3TSH A;  1W1K A;  3AN1 A;  4PWC A;  1F0X A;  3AMZ A;  1W1R A;  3D2H A;  1SB3 B;  5FXD A;  3W8X A;  4PVH A;  1FO4 A;  5G5H B;  3TX1 A;  2P13 A;  5AE2 A;  2GQT A;  2I0K A;  3NVY B;  1JRP A;  1N62 C;  2E3T A;  3I99 A;  1DZN A;  1W1M A;  4XLO A;  1T3Q C;  1DII A;  3TSJ A;  2QKN A;  4JB1 A;  3FWA A;  4DNS A;  2BVH A;  1E8G A;  3PM9 A;  4OAL A;  1N5W C;  2VFU A;  4ZOH B;  2Q4W A;  3DQ0 A;  4PVJ A;  4UD8 A;  1VDV A;  2OAI A;  5FXF A;  4BCA A;  4BC9 A;  4MLA A;  3JS8 A;  2W3S A;  3B9J B;  1W1Q A;  2W3R A;  3S1F A;  2MBR A;  5HQX A;  2P4P A;  2O3G A;  4EC3 A;  5HHZ A;  3EUB 3;  2NQW A;  3FW8 A;  1ZXI C;  2BVF A;  1N61 C;  1E8H A;  4BBY A;  1N63 C;  5D79 A;  1N60 C;  4ML8 A;  5AE3 A;  5FXP A;  2PLI A;  3NVW B;  2YVS A;  1QLT A;  1JRO A;  1WYG A;  3NVV B;  1UXY A;  4HG0 A;  1MBT A;  3LLB A; 
#chains in the Genus database with same CATH topology
 2VAO A;  3AM9 A;  3FW9 A;  2RK5 A;  3NRZ B;  2P3H A;  1QLU A;  1E8F A;  1W1J A;  2QPM A;  3S1E A;  4PZF A;  5HMR A;  3W8Z A;  2VFS A;  3D2J A;  2R8D A;  3LAE A;  2W55 A;  1AHU A;  2AXR A;  4PVK A;  3S1D A;  5G5G B;  2W54 A;  5FXE A;  1AHV A;  1ZR6 A;  2VFR A;  3S1C A;  2EXR A;  3GSY A;  1RM6 B;  1V97 A;  1FFV C;  3KJM A;  3NS1 B;  3W8W A;  1FFU C;  1E0Y A;  2VFV A;  3BW7 A;  1WVE A;  3DED A;  4PVE A;  2IPI A;  3C0P A;  1N5X A;  4O95 A;  4PYT A;  2GQU A;  2PLS A;  1I19 A;  4PWB A;  3EJD B;  2Q85 A;  3VTE A;  2VFT A;  1W1L A;  1W1S A;  3SR6 B;  3D2D A;  1MBB A;  1FIQ B;  1VAO A;  4JAY A;  4BC7 A;  1W1O A;  1AHZ A;  5ADZ A;  1DIQ A;  5I1W A;  3FW7 A;  3HRD C;  1HSK A;  3ETR B;  2R2Z A;  3NVZ B;  1WVF A;  2BVG A;  5AE1 A;  2UUU A;  3TSH A;  3RJ8 A;  1W1K A;  3AN1 A;  4PWC A;  1F0X A;  3AMZ A;  1W1R A;  2Y3R A;  3D2H A;  1SB3 B;  5FXD A;  3W8X A;  4PVH A;  1FO4 A;  2Y4G A;  5G5H B;  3TX1 A;  2P13 A;  5AE2 A;  3POP A;  2GQT A;  2I0K A;  3NVY B;  1JRP A;  5L6F A;  1N62 C;  2E3T A;  3I99 A;  3PQB A;  1DZN A;  1W1M A;  4XLO A;  1T3Q C;  1DII A;  2WDW A;  3TSJ A;  2QKN A;  4JB1 A;  3FWA A;  4DNS A;  2BVH A;  1E8G A;  3EJE B;  3PM9 A;  3HSU A;  4OAL A;  5L6G A;  1N5W C;  2VFU A;  4ZOH B;  2Q4W A;  5K8E A;  3DQ0 A;  4PVJ A;  4UD8 A;  1VDV A;  5I1V A;  2OAI A;  5FXF A;  4BCA A;  4BC9 A;  4MLA A;  5AWV A;  3JS8 A;  2W3S A;  3B9J B;  2UUV A;  1W1Q A;  2W3R A;  3S1F A;  2MBR A;  5HQX A;  2P4P A;  2O3G A;  4EC3 A;  2Y08 A;  5HHZ A;  3EUB 3;  2NQW A;  3FW8 A;  1ZXI C;  2BVF A;  3EJB B;  1N61 C;  2Y3S A;  3RJA A;  1E8H A;  4BBY A;  1N63 C;  5D79 A;  1N60 C;  4ML8 A;  5AE3 A;  5FXP A;  3NVW B;  2PLI A;  2YVS A;  1QLT A;  1JRO A;  1WYG A;  3NVV B;  1UXY A;  4HG0 A;  1MBT A;  3LLB A; 
#chains in the Genus database with same CATH homology
 2VAO A;  3AM9 A;  3FW9 A;  2RK5 A;  3NRZ B;  2P3H A;  1QLU A;  1E8F A;  1W1J A;  2QPM A;  3S1E A;  4PZF A;  5HMR A;  3W8Z A;  2VFS A;  3D2J A;  2R8D A;  3LAE A;  2W55 A;  1AHU A;  2AXR A;  4PVK A;  3S1D A;  5G5G B;  2W54 A;  5FXE A;  1AHV A;  1ZR6 A;  2VFR A;  3S1C A;  2EXR A;  3GSY A;  1RM6 B;  1V97 A;  1FFV C;  3KJM A;  3NS1 B;  3W8W A;  1FFU C;  1E0Y A;  2VFV A;  3BW7 A;  1WVE A;  3DED A;  4PVE A;  2IPI A;  3C0P A;  1N5X A;  4O95 A;  4PYT A;  2GQU A;  2PLS A;  1I19 A;  4PWB A;  2Q85 A;  3VTE A;  2VFT A;  1W1L A;  1W1S A;  3SR6 B;  3D2D A;  1MBB A;  1FIQ B;  1VAO A;  4JAY A;  4BC7 A;  1W1O A;  1AHZ A;  5ADZ A;  1DIQ A;  5I1W A;  3FW7 A;  3HRD C;  1HSK A;  3ETR B;  2R2Z A;  3NVZ B;  1WVF A;  2BVG A;  5AE1 A;  2UUU A;  3TSH A;  3RJ8 A;  1W1K A;  3AN1 A;  4PWC A;  1F0X A;  3AMZ A;  1W1R A;  2Y3R A;  3D2H A;  1SB3 B;  5FXD A;  3W8X A;  4PVH A;  1FO4 A;  2Y4G A;  5G5H B;  3TX1 A;  2P13 A;  5AE2 A;  3POP A;  2GQT A;  2I0K A;  3NVY B;  1JRP A;  5L6F A;  1N62 C;  2E3T A;  3I99 A;  3PQB A;  1DZN A;  1W1M A;  4XLO A;  1T3Q C;  1DII A;  2WDW A;  3TSJ A;  2QKN A;  4JB1 A;  3FWA A;  4DNS A;  2BVH A;  1E8G A;  3PM9 A;  3HSU A;  4OAL A;  5L6G A;  1N5W C;  2VFU A;  4ZOH B;  2Q4W A;  5K8E A;  3DQ0 A;  4PVJ A;  4UD8 A;  1VDV A;  5I1V A;  2OAI A;  5FXF A;  4BCA A;  4BC9 A;  4MLA A;  5AWV A;  3JS8 A;  2W3S A;  3B9J B;  2UUV A;  1W1Q A;  2W3R A;  3S1F A;  2MBR A;  5HQX A;  2P4P A;  2O3G A;  4EC3 A;  2Y08 A;  5HHZ A;  3EUB 3;  2NQW A;  3FW8 A;  1ZXI C;  2BVF A;  2Y3S A;  1N61 C;  3RJA A;  1E8H A;  4BBY A;  1N63 C;  5D79 A;  1N60 C;  4ML8 A;  5AE3 A;  5FXP A;  2PLI A;  3NVW B;  2YVS A;  1QLT A;  1JRO A;  1WYG A;  3NVV B;  1UXY A;  4HG0 A;  1MBT A;  3LLB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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