1W24A

Crystal structure of human vps29
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
182
structure length
180
Chain Sequence
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Human Vacuolar Protein Sorting Protein 29 Reveals a Phosphodiesterase/Nuclease-Like Fold and Two Protein-Protein Interaction Sites.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Cytoplasmic protein
molecule keywords VACUOLAR PROTEIN SORTING PROTEIN 29
total genus 50
structure length 180
sequence length 182
ec nomenclature
pdb deposition date 2004-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12850 Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1w24A00
4O43A 4KBPA 1U32A 2Z1AA 4G9JA 4V0XA 3QFOA 3THOB 4FCXA 5JJTA 2USHA 2IAEC 3QFMA 4TUIA 3E7AA 3C5WC 1UTEA 2XMOA 4WWLA 3ICFA 4H2IA 4YKEA 3DW8C 1W24A 3KBPA 2IE3C 4O24A 1IT6A 1USHA 1MF8A 1S8EA 1HO5A 4O4KA 4V0WA 4MP0A 5JPFA 3ZU0A 2YVTA 2P6BA 3TGHA 5F3WA 2Z06A 4H2BA 3H62B 2QJCA 5INBA 1V73A 3T1IA 3IB8A 4O5GA 1G5BA 4ZX2A 3QFKA 4I5LC 1SU1A 1S70A 3IB7A 1JK7A 3JYFA 5C1VA 2NYLC 2Z72A 1TCOA 5EQVA 4UT3A 3H63A 4NZVA 3DSCA 4B2OA 1AUIA 2HYOA 4H1SA 1HP1A 2AHDA 4DSYA 4DHLA 3AUZA 4FBWA 3FGAC 3RQZA 5DNYA 3DSDA 2HY1A 3H66A 3QFNA 4I5NC 5J28A 3IVEA 1QFCA 1WARA 2WDDA 5HPEA 2BQ8X 1S95A 1S3NA 3AV0A 1T71A 4MOVA 2QFRA 3ZTVA 2HYPA 4XPNA 1S3MA 1T70A 1OIDA 3QG5C 1QHWA 1UF3A 3EGHA 4Q7FA 2ZBMA 2NYMC 2WDEA 1XZWA 2R17A 3THNA 2WDFA 3H69A 3RL5A 3H60A 1OIEA 4FBQA 3N5UA 4H1YP 2KKNA 4J6OA 5B8IA 3H67A 4HD0A 4M0VA 4UWQA 2BCDA 3PSOA 4IYPC 1Z2WA 2IE4C 1Z2XA 3K7WC 4H2FA 1M63A 4LTYA 3RL4A 2CV9A 3E7BA 3K7VC 4DT2A 4KKZA 1HPUA 2Q8UA 4UT3B 2QFPA 4H2GA 3GVEA 3V4YA 4ORBA 1FJMA 5IOHA 4JA7A 3RL3A 3IVDA 3H68A 1OI8A 3P71C 3H64A 4LU9A 4LACC 2GJUA 1XM7A 1WAO1 4UT2A 2BDXA 4IL1A 4ZVZA 2A22A 4OR9A 4V0VA 3CK2A 4FBKA 1NNWA 3PSNA 3H61A 4F0ZA 4ORCA 1S3LA 2JOGA 1KBPA 3C9FA 3LL8A 1II7A 4TUGA 2O8AA 3HVQA 2NXFA 4MOYA 5JPEA 4ORAA 2WDCA 2DFJA 3EGGA 4JA9A 2O8GA 5GTUA 2NPPC
chains in the Genus database with same CATH superfamily
4O43A 2ZOAA 4KBPA 1U32A 2Z1AA 3E0JA 4G9JA 4V0XA 3QFOA 3THOB 4FCXA 5JJTA 2USHA 2IAEC 2DXNA 3QFMA 4TUIA 3E7AA 3C5WC 1UTEA 2XMOA 4WWLA 3ICFA 4H2IA 4YKEA 3DW8C 1W24A 3KBPA 2IE3C 4O24A 1IT6A 1USHA 1MF8A 1S8EA 1HO5A 4O4KA 4V0WA 4MP0A 5JPFA 3ZU0A 2YVTA 2P6BA 3TGHA 5F3WA 2Z06A 4H2BA 3H62B 2QJCA 5INBA 1V73A 3T1IA 3IB8A 4O5GA 1G5BA 4ZX2A 3QFKA 4I5LC 1SU1A 1S70A 3IB7A 1JK7A 3JYFA 5C1VA 2NYLC 2Z72A 1TCOA 5EQVA 4UT3A 3H63A 4NZVA 3DSCA 3FLOA 4B2OA 1AUIA 2HYOA 4H1SA 1HP1A 2AHDA 4DSYA 4DHLA 3AUZA 4FBWA 3FGAC 3RQZA 5DNYA 3DSDA 2HY1A 3H66A 3QFNA 4I5NC 5J28A 3IVEA 1QFCA 1WARA 2WDDA 5HPEA 2BQ8X 1S95A 1S3NA 3AV0A 1T71A 4MOVA 2QFRA 3ZTVA 2HYPA 4XPNA 1S3MA 1T70A 1OIDA 3QG5C 1QHWA 2YEQA 1UF3A 3EGHA 4Q7FA 2ZBMA 2NYMC 2WDEA 1XZWA 2R17A 3THNA 2WDFA 3H69A 3RL5A 3H60A 1OIEA 4FBQA 3N5UA 4H1YP 2DXLA 2KKNA 4J6OA 5B8IA 3H67A 4HD0A 4M0VA 4UWQA 2BCDA 3PSOA 4IYPC 1Z2WA 2IE4C 1Z2XA 3K7WC 4H2FA 1M63A 4LTYA 3RL4A 2CV9A 3E7BA 3K7VC 4DT2A 4KKZA 1HPUA 2Q8UA 4UT3B 2QFPA 4H2GA 3GVEA 3V4YA 4ORBA 1FJMA 5IOHA 4JA7A 3RL3A 2ZO9B 3IVDA 3H68A 1OI8A 3P71C 3H64A 4LU9A 4LACC 2GJUA 1XM7A 1WAO1 4UT2A 2BDXA 4IL1A 4ZVZA 2A22A 4OR9A 4V0VA 3CK2A 4FBKA 1NNWA 3PSNA 3H61A 4F0ZA 4ORCA 1S3LA 2JOGA 1KBPA 3C9FA 3D03A 3LL8A 1II7A 4TUGA 2O8AA 3HVQA 2NXFA 4MOYA 5JPEA 4ORAA 2WDCA 2DFJA 3EGGA 4JA9A 2O8GA 5GTUA 2NPPC
chains in the Genus database with same CATH topology
4O43A 2ZOAA 4KBPA 1U32A 2Z1AA 3E0JA 4G9JA 4V0XA 3QFOA 3THOB 4FCXA 5JJTA 2USHA 2IAEC 2DXNA 3QFMA 4TUIA 3E7AA 3C5WC 1UTEA 2XMOA 4WWLA 3ICFA 4H2IA 4YKEA 3DW8C 1W24A 3KBPA 2IE3C 4O24A 1IT6A 1USHA 1MF8A 1S8EA 1HO5A 4O4KA 4V0WA 4MP0A 5JPFA 3ZU0A 2YVTA 2P6BA 3TGHA 5F3WA 2Z06A 4H2BA 3H62B 2QJCA 5INBA 1V73A 3T1IA 3IB8A 4O5GA 1G5BA 4ZX2A 3QFKA 4I5LC 1SU1A 1S70A 3IB7A 1JK7A 3JYFA 5C1VA 2NYLC 2Z72A 1TCOA 5EQVA 4UT3A 3H63A 4NZVA 3DSCA 3FLOA 4B2OA 1AUIA 2HYOA 4H1SA 1HP1A 2AHDA 4DSYA 4DHLA 3AUZA 4FBWA 3FGAC 3RQZA 5DNYA 3DSDA 2HY1A 3H66A 3QFNA 4I5NC 5J28A 3IVEA 1QFCA 1WARA 2WDDA 5HPEA 2BQ8X 1S95A 1S3NA 3AV0A 1T71A 4MOVA 2QFRA 3ZTVA 2HYPA 4XPNA 1S3MA 1T70A 1OIDA 3QG5C 1QHWA 2YEQA 1UF3A 3EGHA 4Q7FA 2ZBMA 2NYMC 2WDEA 1XZWA 2R17A 3THNA 2WDFA 3H69A 3RL5A 3H60A 1OIEA 4FBQA 3N5UA 4H1YP 2DXLA 2KKNA 4J6OA 5B8IA 3H67A 4HD0A 4M0VA 4UWQA 2BCDA 3PSOA 4IYPC 1Z2WA 2IE4C 1Z2XA 3K7WC 4H2FA 1M63A 4LTYA 3RL4A 2CV9A 3E7BA 3K7VC 4DT2A 4KKZA 1HPUA 2Q8UA 4UT3B 2QFPA 4H2GA 3GVEA 3V4YA 4ORBA 1FJMA 5IOHA 4JA7A 3RL3A 2ZO9B 3IVDA 3H68A 1OI8A 3P71C 3H64A 4LU9A 4LACC 2GJUA 1XM7A 1WAO1 4UT2A 2BDXA 4IL1A 4ZVZA 2A22A 4OR9A 4V0VA 3CK2A 4FBKA 1NNWA 3PSNA 3H61A 4F0ZA 4ORCA 1S3LA 2JOGA 1KBPA 3C9FA 3D03A 3LL8A 1II7A 4TUGA 2O8AA 3HVQA 2NXFA 4MOYA 5JPEA 4ORAA 2WDCA 2DFJA 3EGGA 4JA9A 2O8GA 5GTUA 2NPPC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O43 A;  4KBP A;  1U32 A;  2Z1A A;  4G9J A;  4V0X A;  3QFO A;  3THO B;  4FCX A;  5JJT A;  2USH A;  2IAE C;  3QFM A;  4TUI A;  3E7A A;  3C5W C;  1UTE A;  2XMO A;  4WWL A;  3ICF A;  4H2I A;  4YKE A;  3DW8 C;  1W24 A;  3KBP A;  2IE3 C;  4O24 A;  1IT6 A;  1USH A;  1MF8 A;  1S8E A;  1HO5 A;  4O4K A;  4V0W A;  4MP0 A;  5JPF A;  3ZU0 A;  2YVT A;  2P6B A;  3TGH A;  5F3W A;  2Z06 A;  4H2B A;  3H62 B;  2QJC A;  5INB A;  1V73 A;  3T1I A;  3IB8 A;  4O5G A;  1G5B A;  4ZX2 A;  3QFK A;  4I5L C;  1SU1 A;  1S70 A;  3IB7 A;  1JK7 A;  3JYF A;  5C1V A;  2NYL C;  2Z72 A;  1TCO A;  5EQV A;  4UT3 A;  3H63 A;  4NZV A;  3DSC A;  4B2O A;  1AUI A;  2HYO A;  4H1S A;  1HP1 A;  2AHD A;  4DSY A;  4DHL A;  3AUZ A;  4FBW A;  3FGA C;  3RQZ A;  5DNY A;  3DSD A;  2HY1 A;  3H66 A;  3QFN A;  4I5N C;  5J28 A;  3IVE A;  1QFC A;  1WAR A;  2WDD A;  5HPE A;  2BQ8 X;  1S95 A;  1S3N A;  3AV0 A;  1T71 A;  4MOV A;  2QFR A;  3ZTV A;  2HYP A;  4XPN A;  1S3M A;  1T70 A;  1OID A;  3QG5 C;  1QHW A;  1UF3 A;  3EGH A;  4Q7F A;  2ZBM A;  2NYM C;  2WDE A;  1XZW A;  2R17 A;  3THN A;  2WDF A;  3H69 A;  3RL5 A;  3H60 A;  1OIE A;  4FBQ A;  3N5U A;  4H1Y P;  2KKN A;  4J6O A;  5B8I A;  3H67 A;  4HD0 A;  4M0V A;  4UWQ A;  2BCD A;  3PSO A;  4IYP C;  1Z2W A;  2IE4 C;  1Z2X A;  3K7W C;  4H2F A;  1M63 A;  4LTY A;  3RL4 A;  2CV9 A;  3E7B A;  3K7V C;  4DT2 A;  4KKZ A;  1HPU A;  2Q8U A;  4UT3 B;  2QFP A;  4H2G A;  3GVE A;  3V4Y A;  4ORB A;  1FJM A;  5IOH A;  4JA7 A;  3RL3 A;  3IVD A;  3H68 A;  1OI8 A;  3P71 C;  3H64 A;  4LU9 A;  4LAC C;  2GJU A;  1XM7 A;  1WAO 1;  4UT2 A;  2BDX A;  4IL1 A;  4ZVZ A;  2A22 A;  4OR9 A;  4V0V A;  3CK2 A;  4FBK A;  1NNW A;  3PSN A;  3H61 A;  4F0Z A;  4ORC A;  1S3L A;  2JOG A;  1KBP A;  3C9F A;  3LL8 A;  1II7 A;  4TUG A;  2O8A A;  3HVQ A;  2NXF A;  4MOY A;  5JPE A;  4ORA A;  2WDC A;  2DFJ A;  3EGG A;  4JA9 A;  2O8G A;  5GTU A;  2NPP C; 
#chains in the Genus database with same CATH topology
 4O43 A;  2ZOA A;  4KBP A;  1U32 A;  2Z1A A;  3E0J A;  4G9J A;  4V0X A;  3QFO A;  3THO B;  4FCX A;  5JJT A;  2USH A;  2IAE C;  2DXN A;  3QFM A;  4TUI A;  3E7A A;  3C5W C;  1UTE A;  2XMO A;  4WWL A;  3ICF A;  4H2I A;  4YKE A;  3DW8 C;  1W24 A;  3KBP A;  2IE3 C;  4O24 A;  1IT6 A;  1USH A;  1MF8 A;  1S8E A;  1HO5 A;  4O4K A;  4V0W A;  4MP0 A;  5JPF A;  3ZU0 A;  2YVT A;  2P6B A;  3TGH A;  5F3W A;  2Z06 A;  4H2B A;  3H62 B;  2QJC A;  5INB A;  1V73 A;  3T1I A;  3IB8 A;  4O5G A;  1G5B A;  4ZX2 A;  3QFK A;  4I5L C;  1SU1 A;  1S70 A;  3IB7 A;  1JK7 A;  3JYF A;  5C1V A;  2NYL C;  2Z72 A;  1TCO A;  5EQV A;  4UT3 A;  3H63 A;  4NZV A;  3DSC A;  3FLO A;  4B2O A;  1AUI A;  2HYO A;  4H1S A;  1HP1 A;  2AHD A;  4DSY A;  4DHL A;  3AUZ A;  4FBW A;  3FGA C;  3RQZ A;  5DNY A;  3DSD A;  2HY1 A;  3H66 A;  3QFN A;  4I5N C;  5J28 A;  3IVE A;  1QFC A;  1WAR A;  2WDD A;  5HPE A;  2BQ8 X;  1S95 A;  1S3N A;  3AV0 A;  1T71 A;  4MOV A;  2QFR A;  3ZTV A;  2HYP A;  4XPN A;  1S3M A;  1T70 A;  1OID A;  3QG5 C;  1QHW A;  2YEQ A;  1UF3 A;  3EGH A;  4Q7F A;  2ZBM A;  2NYM C;  2WDE A;  1XZW A;  2R17 A;  3THN A;  2WDF A;  3H69 A;  3RL5 A;  3H60 A;  1OIE A;  4FBQ A;  3N5U A;  4H1Y P;  2DXL A;  2KKN A;  4J6O A;  5B8I A;  3H67 A;  4HD0 A;  4M0V A;  4UWQ A;  2BCD A;  3PSO A;  4IYP C;  1Z2W A;  2IE4 C;  1Z2X A;  3K7W C;  4H2F A;  1M63 A;  4LTY A;  3RL4 A;  2CV9 A;  3E7B A;  3K7V C;  4DT2 A;  4KKZ A;  1HPU A;  2Q8U A;  4UT3 B;  2QFP A;  4H2G A;  3GVE A;  3V4Y A;  4ORB A;  1FJM A;  5IOH A;  4JA7 A;  3RL3 A;  2ZO9 B;  3IVD A;  3H68 A;  1OI8 A;  3P71 C;  3H64 A;  4LU9 A;  4LAC C;  2GJU A;  1XM7 A;  1WAO 1;  4UT2 A;  2BDX A;  4IL1 A;  4ZVZ A;  2A22 A;  4OR9 A;  4V0V A;  3CK2 A;  4FBK A;  1NNW A;  3PSN A;  3H61 A;  4F0Z A;  4ORC A;  1S3L A;  2JOG A;  1KBP A;  3C9F A;  3D03 A;  3LL8 A;  1II7 A;  4TUG A;  2O8A A;  3HVQ A;  2NXF A;  4MOY A;  5JPE A;  4ORA A;  2WDC A;  2DFJ A;  3EGG A;  4JA9 A;  2O8G A;  5GTU A;  2NPP C; 
#chains in the Genus database with same CATH homology
 4O43 A;  2ZOA A;  4KBP A;  1U32 A;  2Z1A A;  3E0J A;  4G9J A;  4V0X A;  3QFO A;  3THO B;  4FCX A;  5JJT A;  2USH A;  2IAE C;  2DXN A;  3QFM A;  4TUI A;  3E7A A;  3C5W C;  1UTE A;  2XMO A;  4WWL A;  3ICF A;  4H2I A;  4YKE A;  3DW8 C;  1W24 A;  3KBP A;  2IE3 C;  4O24 A;  1IT6 A;  1USH A;  1MF8 A;  1S8E A;  1HO5 A;  4O4K A;  4V0W A;  4MP0 A;  5JPF A;  3ZU0 A;  2YVT A;  2P6B A;  3TGH A;  5F3W A;  2Z06 A;  4H2B A;  3H62 B;  2QJC A;  5INB A;  1V73 A;  3T1I A;  3IB8 A;  4O5G A;  1G5B A;  4ZX2 A;  3QFK A;  4I5L C;  1SU1 A;  1S70 A;  3IB7 A;  1JK7 A;  3JYF A;  5C1V A;  2NYL C;  2Z72 A;  1TCO A;  5EQV A;  4UT3 A;  3H63 A;  4NZV A;  3DSC A;  3FLO A;  4B2O A;  1AUI A;  2HYO A;  4H1S A;  1HP1 A;  2AHD A;  4DSY A;  4DHL A;  3AUZ A;  4FBW A;  3FGA C;  3RQZ A;  5DNY A;  3DSD A;  2HY1 A;  3H66 A;  3QFN A;  4I5N C;  5J28 A;  3IVE A;  1QFC A;  1WAR A;  2WDD A;  5HPE A;  2BQ8 X;  1S95 A;  1S3N A;  3AV0 A;  1T71 A;  4MOV A;  2QFR A;  3ZTV A;  2HYP A;  4XPN A;  1S3M A;  1T70 A;  1OID A;  3QG5 C;  1QHW A;  2YEQ A;  1UF3 A;  3EGH A;  4Q7F A;  2ZBM A;  2NYM C;  2WDE A;  1XZW A;  2R17 A;  3THN A;  2WDF A;  3H69 A;  3RL5 A;  3H60 A;  1OIE A;  4FBQ A;  3N5U A;  4H1Y P;  2DXL A;  2KKN A;  4J6O A;  5B8I A;  3H67 A;  4HD0 A;  4M0V A;  4UWQ A;  2BCD A;  3PSO A;  4IYP C;  1Z2W A;  2IE4 C;  1Z2X A;  3K7W C;  4H2F A;  1M63 A;  4LTY A;  3RL4 A;  2CV9 A;  3E7B A;  3K7V C;  4DT2 A;  4KKZ A;  1HPU A;  2Q8U A;  4UT3 B;  2QFP A;  4H2G A;  3GVE A;  3V4Y A;  4ORB A;  1FJM A;  5IOH A;  4JA7 A;  3RL3 A;  2ZO9 B;  3IVD A;  3H68 A;  1OI8 A;  3P71 C;  3H64 A;  4LU9 A;  4LAC C;  2GJU A;  1XM7 A;  1WAO 1;  4UT2 A;  2BDX A;  4IL1 A;  4ZVZ A;  2A22 A;  4OR9 A;  4V0V A;  3CK2 A;  4FBK A;  1NNW A;  3PSN A;  3H61 A;  4F0Z A;  4ORC A;  1S3L A;  2JOG A;  1KBP A;  3C9F A;  3D03 A;  3LL8 A;  1II7 A;  4TUG A;  2O8A A;  3HVQ A;  2NXF A;  4MOY A;  5JPE A;  4ORA A;  2WDC A;  2DFJ A;  3EGG A;  4JA9 A;  2O8G A;  5GTU A;  2NPP C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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