1W2BE

Trigger factor ribosome binding domain in complex with 50s
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2004-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1w2bE01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1w2bE02
3CCJE 5H1SI 3CC4E 1VQLE 1QVGE 4U67E 1Q86G 1M1KG 3G6EE 5DM6E 3CCRE 3I55E 3CCEE 3I56E 1YHQE 3CCUE 3CCQE 1VQPE 3CCME 1YITE 1M90G 1VQ6E 1YI2E 2ZJPE 1VQ7E 1JJ2E 1S72E 2ZJQE 1KD1G 3CPWE 1NJIG 5GAGG 2CQLA 5GAHG 4WFBE 4IOCE 3J7ZG 1VQNE 2ZJRE 3CF5E 4IOAE 1VQ9E 3G4SE 1K9MG 3PIOE 3CMEE 3CC2E 4IO9E 5HL7E 3CC7E 3CCVE 5JVGE 5GAEG 1Q82G 1QVFE 3G71E 1YJ9E 1K73G 4WFAE 4UY8G 1W2BE 1YJWE 2OTLE 5AN9B 4WF9E 5GADG 4WCEE 1RL6A 1VQKE 4WFNE 1Q81G 5MLCH 3DLLE 1N8RG 2OTJE 3CCSE 3CCLE 1VQME 3CD6E 3CMAE 1KC8G 3PIPE 3OW2E 1Q7YG 1YIJE 1VQ4E 3CXCE 1VQOE 1YJNE 1VQ8E 1KQSE 5JVHE 1VQ5E 2QEXE 5DM7E 2QA4E 1K8AG
chains in the Genus database with same CATH superfamily
1P4PA 2OY7A 3CCJE 2AF5A 5H1SI 3CC4E 1VQLE 2OYBO 1QVGE 2OL6O 4U67E 1Q86G 1M1KG 2FKGA 3G6EE 2OY1O 5DM6E 3CCRE 3I55E 3CCEE 3I56E 1YHQE 3CCUE 3CCQE 3CCME 1VQPE 1YITE 1M90G 1VQ6E 2PI3O 1YI2E 2I5VO 2ZJPE 1VQ7E 1JJ2E 2OY8A 1S72E 2ZJQE 1KD1G 1FJ1E 3CPWE 1NJIG 5GAGG 2CQLA 5GAHG 2G8CO 4WFBE 2OL8O 1OSPO 4IOCE 3J7ZG 1VQNE 2I5ZO 3EC5A 2OY5O 2ZJRE 3CF5E 2HKDA 1RJLC 4IOAE 1VQ9E 3G4SE 1K9MG 3CKGA 3PIOE 3CMEE 3CC2E 4IO9E 5HL7E 3CC7E 3CCVE 5JVGE 5GAEG 1Q82G 1QVFE 3G71E 1YJ9E 1K8AG 1K73G 4WFAE 4UY8G 1W2BE 1YJWE 2OTLE 5AN9B 4WF9E 5GADG 4WCEE 5B10O 1RL6A 1VQKE 4WFNE 1Q81G 3IGEA 5MLCH 2OL7A 3DLLE 1N8RG 2OTJE 3CCSE 3CCLE 1VQME 3CD6E 3CMAE 3AUMO 1KC8G 3PIPE 5B3MO 3IG9A 3OW2E 1Q7YG 1YIJE 1VQ4E 3CXCE 1VQOE 1YJNE 3CKFA 1VQ8E 5B11O 1KQSE 5JVHE 5B2AO 1VQ5E 2QEXE 5DM7E 2QA4E 2FKJA
chains in the Genus database with same CATH topology
3CCJE 5H1SI 3CC4E 1VQLE 1QVGE 4U67E 1Q86G 1M1KG 3G6EE 5DM6E 3CCRE 3I55E 3CCEE 3I56E 1YHQE 3CCUE 3CCQE 1VQPE 3CCME 1YITE 1M90G 1VQ6E 1YI2E 2ZJPE 1VQ7E 1JJ2E 1S72E 2ZJQE 1KD1G 3CPWE 1NJIG 5GAGG 2CQLA 5GAHG 4WFBE 4IOCE 3J7ZG 1VQNE 2ZJRE 3CF5E 4IOAE 1VQ9E 3G4SE 1K9MG 3PIOE 3CMEE 3CC2E 4IO9E 5HL7E 3CC7E 3CCVE 5JVGE 5GAEG 1Q82G 1QVFE 3G71E 1YJ9E 1K73G 4WFAE 4UY8G 1W2BE 1YJWE 2OTLE 5AN9B 4WF9E 5GADG 4WCEE 1RL6A 1VQKE 4WFNE 1Q81G 5MLCH 3DLLE 1N8RG 2OTJE 3CCSE 3CCLE 1VQME 3CD6E 3CMAE 1KC8G 3PIPE 3OW2E 1Q7YG 1YIJE 1VQ4E 3CXCE 1VQOE 1YJNE 1VQ8E 1KQSE 5JVHE 1VQ5E 2QEXE 5DM7E 2QA4E 1K8AG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCJ E;  5H1S I;  3CC4 E;  1VQL E;  1QVG E;  4U67 E;  1Q86 G;  1M1K G;  3G6E E;  5DM6 E;  3CCR E;  3I55 E;  3CCE E;  3I56 E;  1YHQ E;  3CCU E;  3CCQ E;  1VQP E;  3CCM E;  1YIT E;  1M90 G;  1VQ6 E;  1YI2 E;  2ZJP E;  1VQ7 E;  1JJ2 E;  1S72 E;  2ZJQ E;  1KD1 G;  3CPW E;  1NJI G;  5GAG G;  2CQL A;  5GAH G;  4WFB E;  4IOC E;  3J7Z G;  1VQN E;  2ZJR E;  3CF5 E;  4IOA E;  1VQ9 E;  3G4S E;  1K9M G;  3PIO E;  3CME E;  3CC2 E;  4IO9 E;  5HL7 E;  3CC7 E;  3CCV E;  5JVG E;  5GAE G;  1Q82 G;  1QVF E;  3G71 E;  1YJ9 E;  1K73 G;  4WFA E;  4UY8 G;  1W2B E;  1YJW E;  2OTL E;  5AN9 B;  4WF9 E;  5GAD G;  4WCE E;  1RL6 A;  1VQK E;  4WFN E;  1Q81 G;  5MLC H;  3DLL E;  1N8R G;  2OTJ E;  3CCS E;  3CCL E;  1VQM E;  3CD6 E;  3CMA E;  1KC8 G;  3PIP E;  3OW2 E;  1Q7Y G;  1YIJ E;  1VQ4 E;  3CXC E;  1VQO E;  1YJN E;  1VQ8 E;  1KQS E;  5JVH E;  1VQ5 E;  2QEX E;  5DM7 E;  2QA4 E;  1K8A G; 
#chains in the Genus database with same CATH topology
 1P4P A;  2OY7 A;  3CCJ E;  2AF5 A;  5H1S I;  3CC4 E;  1VQL E;  2OYB O;  1QVG E;  2OL6 O;  4U67 E;  1Q86 G;  1M1K G;  2FKG A;  3G6E E;  2OY1 O;  5DM6 E;  3CCR E;  3I55 E;  3CCE E;  3I56 E;  1YHQ E;  3CCU E;  3CCQ E;  3CCM E;  1VQP E;  1YIT E;  1M90 G;  1VQ6 E;  2PI3 O;  1YI2 E;  2I5V O;  2ZJP E;  1VQ7 E;  1JJ2 E;  2OY8 A;  1S72 E;  2ZJQ E;  1KD1 G;  1FJ1 E;  3CPW E;  1NJI G;  5GAG G;  2CQL A;  5GAH G;  2G8C O;  4WFB E;  2OL8 O;  1OSP O;  4IOC E;  3J7Z G;  1VQN E;  2I5Z O;  3EC5 A;  2OY5 O;  2ZJR E;  3CF5 E;  2HKD A;  1RJL C;  4IOA E;  1VQ9 E;  3G4S E;  1K9M G;  3CKG A;  3PIO E;  3CME E;  3CC2 E;  4IO9 E;  5HL7 E;  3CC7 E;  3CCV E;  5JVG E;  5GAE G;  1Q82 G;  1QVF E;  3G71 E;  1YJ9 E;  1K8A G;  1K73 G;  4WFA E;  4UY8 G;  1W2B E;  1YJW E;  2OTL E;  5AN9 B;  4WF9 E;  5GAD G;  4WCE E;  5B10 O;  1RL6 A;  1VQK E;  4WFN E;  1Q81 G;  3IGE A;  5MLC H;  2OL7 A;  3DLL E;  1N8R G;  2OTJ E;  3CCS E;  3CCL E;  1VQM E;  3CD6 E;  3CMA E;  3AUM O;  1KC8 G;  3PIP E;  5B3M O;  3IG9 A;  3OW2 E;  1Q7Y G;  1YIJ E;  1VQ4 E;  3CXC E;  1VQO E;  1YJN E;  3CKF A;  1VQ8 E;  5B11 O;  1KQS E;  5JVH E;  5B2A O;  1VQ5 E;  2QEX E;  5DM7 E;  2QA4 E;  2FKJ A; 
#chains in the Genus database with same CATH homology
 3CCJ E;  5H1S I;  3CC4 E;  1VQL E;  1QVG E;  4U67 E;  1Q86 G;  1M1K G;  3G6E E;  5DM6 E;  3CCR E;  3I55 E;  3CCE E;  3I56 E;  1YHQ E;  3CCU E;  3CCQ E;  1VQP E;  3CCM E;  1YIT E;  1M90 G;  1VQ6 E;  1YI2 E;  2ZJP E;  1VQ7 E;  1JJ2 E;  1S72 E;  2ZJQ E;  1KD1 G;  3CPW E;  1NJI G;  5GAG G;  2CQL A;  5GAH G;  4WFB E;  4IOC E;  3J7Z G;  1VQN E;  2ZJR E;  3CF5 E;  4IOA E;  1VQ9 E;  3G4S E;  1K9M G;  3PIO E;  3CME E;  3CC2 E;  4IO9 E;  5HL7 E;  3CC7 E;  3CCV E;  5JVG E;  5GAE G;  1Q82 G;  1QVF E;  3G71 E;  1YJ9 E;  1K73 G;  4WFA E;  4UY8 G;  1W2B E;  1YJW E;  2OTL E;  5AN9 B;  4WF9 E;  5GAD G;  4WCE E;  1RL6 A;  1VQK E;  4WFN E;  1Q81 G;  5MLC H;  3DLL E;  1N8R G;  2OTJ E;  3CCS E;  3CCL E;  1VQM E;  3CD6 E;  3CMA E;  1KC8 G;  3PIP E;  3OW2 E;  1Q7Y G;  1YIJ E;  1VQ4 E;  3CXC E;  1VQO E;  1YJN E;  1VQ8 E;  1KQS E;  5JVH E;  1VQ5 E;  2QEX E;  5DM7 E;  2QA4 E;  1K8A G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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