1W2BE

Trigger factor ribosome binding domain in complex with 50s
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
b'PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S RRNA
publication title Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins
pubmed doi rcsb
source organism Escherichia coli
molecule tags Ribosome
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2004-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1w2bE01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1w2bE02
3I55E 3G71E 3G4SE 3J7ZG 3CCQE 5DM7E 1YJNE 1VQLE 5MLCH 3CCJE 1YITE 1Q81G 1KQSE 3CCLE 1KC8G 3DLLE 2ZJPE 2QEXE 1QVGE 3PIPE 2QA4E 3CC4E 5GADG 3I56E 3CD6E 1YJ9E 3G6EE 1VQPE 5GAGG 1JJ2E 5H1SI 5HL7E 1M90G 1VQ8E 4WFNE 3CCVE 4U67E 2ZJRE 3CF5E 4IOAE 1K9MG 1Q82G 3CMAE 4WFAE 1YIJE 4IO9E 3OW2E 3CCRE 3CC2E 1YI2E 1K73G 5JVGE 3CMEE 3CCSE 1VQNE 3CCUE 1VQOE 4UY8G 4WFBE 1VQ4E 2OTJE 5AN9B 3CC7E 4WCEE 1VQ7E 1Q7YG 1VQ5E 1S72E 1NJIG 1W2BE 2CQLA 2OTLE 3CXCE 1RL6A 1QVFE 1VQ9E 1VQ6E 1VQKE 5GAHG 3PIOE 1K8AG 2ZJQE 3CPWE 1M1KG 1YJWE 5JVHE 5GAEG 1YHQE 1VQME 3CCME 1KD1G 1Q86G 4IOCE 1N8RG 3CCEE 5DM6E 4WF9E
chains in the Genus database with same CATH superfamily
3I55E 3G71E 3G4SE 3J7ZG 3CCQE 5DM7E 1YJNE 1VQLE 5MLCH 3CCJE 2PI3O 3AUMO 1YITE 1Q81G 1KQSE 3CCLE 1FJ1E 1KC8G 3DLLE 3CKGA 2ZJPE 2QEXE 1QVGE 3PIPE 2QA4E 3CC4E 5GADG 3I56E 3CD6E 1YJ9E 2OY8A 3G6EE 1VQPE 1P4PA 5GAGG 2I5VO 2OY7A 1JJ2E 5H1SI 5HL7E 2I5ZO 1M90G 1VQ8E 4WFNE 3CCVE 4U67E 2ZJRE 3CF5E 1RJLC 4IOAE 2OY1O 2OL8O 3CKFA 2OY5O 1K9MG 2HKDA 3CMAE 1Q82G 4WFAE 1YIJE 3EC5A 3IG9A 4IO9E 3OW2E 3CCRE 3CC2E 2OL6O 3IGEA 1YI2E 1K73G 5JVGE 3CMEE 3CCSE 1VQNE 3CCUE 1VQOE 4UY8G 4WFBE 1VQ4E 2FKGA 2OTJE 5AN9B 3CC7E 4WCEE 1VQ7E 1Q7YG 1VQ5E 1S72E 2OL7A 1NJIG 1W2BE 2CQLA 2OTLE 3CXCE 1RL6A 1QVFE 1VQ9E 1VQ6E 1VQKE 1OSPO 5GAHG 3PIOE 1K8AG 2ZJQE 3CPWE 2AF5A 5B10O 1M1KG 1YJWE 5JVHE 2OYBO 5GAEG 2G8CO 1YHQE 1VQME 3CCME 1KD1G 1Q86G 5B11O 4IOCE 1N8RG 5B2AO 5B3MO 3CCEE 5DM6E 4WF9E 2FKJA
chains in the Genus database with same CATH topology
3I55E 3G71E 3G4SE 3J7ZG 3CCQE 5DM7E 1YJNE 1VQLE 5MLCH 3CCJE 1YITE 1Q81G 1KQSE 3CCLE 1KC8G 3DLLE 2ZJPE 2QEXE 1QVGE 3PIPE 2QA4E 3CC4E 5GADG 3I56E 3CD6E 1YJ9E 3G6EE 1VQPE 5GAGG 1JJ2E 5H1SI 5HL7E 1M90G 1VQ8E 4WFNE 3CCVE 4U67E 2ZJRE 3CF5E 4IOAE 1K9MG 1Q82G 3CMAE 4WFAE 1YIJE 4IO9E 3OW2E 3CCRE 3CC2E 1YI2E 1K73G 5JVGE 3CMEE 3CCSE 1VQNE 3CCUE 1VQOE 4UY8G 4WFBE 1VQ4E 2OTJE 5AN9B 3CC7E 4WCEE 1VQ7E 1Q7YG 1VQ5E 1S72E 1NJIG 1W2BE 2CQLA 2OTLE 3CXCE 1RL6A 1QVFE 1VQ9E 1VQ6E 1VQKE 5GAHG 3PIOE 1K8AG 2ZJQE 3CPWE 1M1KG 1YJWE 5JVHE 5GAEG 1YHQE 1VQME 3CCME 1KD1G 1Q86G 4IOCE 1N8RG 3CCEE 5DM6E 4WF9E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I55 E;  3G71 E;  3G4S E;  3J7Z G;  3CCQ E;  5DM7 E;  1YJN E;  1VQL E;  5MLC H;  3CCJ E;  1YIT E;  1Q81 G;  1KQS E;  3CCL E;  1KC8 G;  3DLL E;  2ZJP E;  2QEX E;  1QVG E;  3PIP E;  2QA4 E;  3CC4 E;  5GAD G;  3I56 E;  3CD6 E;  1YJ9 E;  3G6E E;  1VQP E;  5GAG G;  1JJ2 E;  5H1S I;  5HL7 E;  1M90 G;  1VQ8 E;  4WFN E;  3CCV E;  4U67 E;  2ZJR E;  3CF5 E;  4IOA E;  1K9M G;  1Q82 G;  3CMA E;  4WFA E;  1YIJ E;  4IO9 E;  3OW2 E;  3CCR E;  3CC2 E;  1YI2 E;  1K73 G;  5JVG E;  3CME E;  3CCS E;  1VQN E;  3CCU E;  1VQO E;  4UY8 G;  4WFB E;  1VQ4 E;  2OTJ E;  5AN9 B;  3CC7 E;  4WCE E;  1VQ7 E;  1Q7Y G;  1VQ5 E;  1S72 E;  1NJI G;  1W2B E;  2CQL A;  2OTL E;  3CXC E;  1RL6 A;  1QVF E;  1VQ9 E;  1VQ6 E;  1VQK E;  5GAH G;  3PIO E;  1K8A G;  2ZJQ E;  3CPW E;  1M1K G;  1YJW E;  5JVH E;  5GAE G;  1YHQ E;  1VQM E;  3CCM E;  1KD1 G;  1Q86 G;  4IOC E;  1N8R G;  3CCE E;  5DM6 E;  4WF9 E; 
#chains in the Genus database with same CATH topology
 3I55 E;  3G71 E;  3G4S E;  3J7Z G;  3CCQ E;  5DM7 E;  1YJN E;  1VQL E;  5MLC H;  3CCJ E;  2PI3 O;  3AUM O;  1YIT E;  1Q81 G;  1KQS E;  3CCL E;  1FJ1 E;  1KC8 G;  3DLL E;  3CKG A;  2ZJP E;  2QEX E;  1QVG E;  3PIP E;  2QA4 E;  3CC4 E;  5GAD G;  3I56 E;  3CD6 E;  1YJ9 E;  2OY8 A;  3G6E E;  1VQP E;  1P4P A;  5GAG G;  2I5V O;  2OY7 A;  1JJ2 E;  5H1S I;  5HL7 E;  2I5Z O;  1M90 G;  1VQ8 E;  4WFN E;  3CCV E;  4U67 E;  2ZJR E;  3CF5 E;  1RJL C;  4IOA E;  2OY1 O;  2OL8 O;  3CKF A;  2OY5 O;  1K9M G;  2HKD A;  3CMA E;  1Q82 G;  4WFA E;  1YIJ E;  3EC5 A;  3IG9 A;  4IO9 E;  3OW2 E;  3CCR E;  3CC2 E;  2OL6 O;  3IGE A;  1YI2 E;  1K73 G;  5JVG E;  3CME E;  3CCS E;  1VQN E;  3CCU E;  1VQO E;  4UY8 G;  4WFB E;  1VQ4 E;  2FKG A;  2OTJ E;  5AN9 B;  3CC7 E;  4WCE E;  1VQ7 E;  1Q7Y G;  1VQ5 E;  1S72 E;  2OL7 A;  1NJI G;  1W2B E;  2CQL A;  2OTL E;  3CXC E;  1RL6 A;  1QVF E;  1VQ9 E;  1VQ6 E;  1VQK E;  1OSP O;  5GAH G;  3PIO E;  1K8A G;  2ZJQ E;  3CPW E;  2AF5 A;  5B10 O;  1M1K G;  1YJW E;  5JVH E;  2OYB O;  5GAE G;  2G8C O;  1YHQ E;  1VQM E;  3CCM E;  1KD1 G;  1Q86 G;  5B11 O;  4IOC E;  1N8R G;  5B2A O;  5B3M O;  3CCE E;  5DM6 E;  4WF9 E;  2FKJ A; 
#chains in the Genus database with same CATH homology
 3I55 E;  3G71 E;  3G4S E;  3J7Z G;  3CCQ E;  5DM7 E;  1YJN E;  1VQL E;  5MLC H;  3CCJ E;  1YIT E;  1Q81 G;  1KQS E;  3CCL E;  1KC8 G;  3DLL E;  2ZJP E;  2QEX E;  1QVG E;  3PIP E;  2QA4 E;  3CC4 E;  5GAD G;  3I56 E;  3CD6 E;  1YJ9 E;  3G6E E;  1VQP E;  5GAG G;  1JJ2 E;  5H1S I;  5HL7 E;  1M90 G;  1VQ8 E;  4WFN E;  3CCV E;  4U67 E;  2ZJR E;  3CF5 E;  4IOA E;  1K9M G;  1Q82 G;  3CMA E;  4WFA E;  1YIJ E;  4IO9 E;  3OW2 E;  3CCR E;  3CC2 E;  1YI2 E;  1K73 G;  5JVG E;  3CME E;  3CCS E;  1VQN E;  3CCU E;  1VQO E;  4UY8 G;  4WFB E;  1VQ4 E;  2OTJ E;  5AN9 B;  3CC7 E;  4WCE E;  1VQ7 E;  1Q7Y G;  1VQ5 E;  1S72 E;  1NJI G;  1W2B E;  2CQL A;  2OTL E;  3CXC E;  1RL6 A;  1QVF E;  1VQ9 E;  1VQ6 E;  1VQK E;  5GAH G;  3PIO E;  1K8A G;  2ZJQ E;  3CPW E;  1M1K G;  1YJW E;  5JVH E;  5GAE G;  1YHQ E;  1VQM E;  3CCM E;  1KD1 G;  1Q86 G;  4IOC E;  1N8R G;  3CCE E;  5DM6 E;  4WF9 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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