1W3OA

Crystal structure of nima from d. radiodurans
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
molecule keywords NIMA-RELATED PROTEIN
total genus 46
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3oA00
4ZKYA 3HY8A 3ZOCA 2A2JA 4L82A 2ED4A 3KYFA 1RFEA 3U5WA 2FURA 3A6QA 1VL7A 3K87A 1WGBA 3SWJA 3CP3A 3KYGA 1CI0A 3K86A 3R5RA 3R5PA 1WLKA 2HQ9A 2NR4A 4HMXA 4HMUA 5ESCA 5JABA 3CB0A 4HMVA 2D36A 3VY5A 1FLMA 2RDEA 3A6RA 3R5YA 1USCA 2AQ6A 1DNLA 1G76A 3FGEA 2QEAA 3F7EA 1W3PA 3VY2A 3K88A 4XHYA 2FHQA 4YWNA 2FG9A 4HMWA 3R5WA 1T9MA 2ARZA 3AWHA 3DMBA 1WLIA 2HTIA 4HMTA 3ZOEA 3U0IA 4Z85A 2E83A 1G77A 3BA3A 1W3RA 1YLNA 4XJ2A 2Q9KA 4HMSA 4HX6A 3NFWA 5CHOA 4YBNA 2X1JA 2IABA 2D5MA 1XHNA 1W9AA 3U35A 3ZOFA 5BNCA 3A20A 3B5MA 2IMLA 4F07A 2I51A 3AMFA 1W3OA 2GJGA 3RH7A 3U34A 1AXJA 1W3QA 1RZ0A 2OL5A 1USFA 1Y30A 2ASFA 2HHZA 1RZ1A 2VPAA 1NRGA 2R0XA 2HQ7A 2I02A 2R6VA 2QCKA 2OU5A 2ECRA 3HMZA 2HTDA 3ZOHA 1XXOA 3PFTA 1I0RA 3E4VA 1YOAA 3TGVA 1I0SA 2RE7A 3ZOGA 3GASA 3R5ZA 2IG6A 1G79A 3BPKA 4R82A 4QVBA 3VYAA 3DNHA 2D38A 4IRAA 3R5LA 1G78A 3FKHA 3H96A 2X1KA 2D37A 1WV4A 5CHEC 4Y9IA 3IN6A 2ECUA 4N7RC 3DB0A 3EC6A 1TY9A 3BNKA 2PTFA 1JNWA 1EJEA 3ZODA
chains in the Genus database with same CATH superfamily
4ZKYA 3HY8A 3ZOCA 2A2JA 4L82A 2ED4A 4W64A 3KYFA 1RFEA 3U5WA 2FURA 4HKHA 3A6QA 1VL7A 3K87A 1WGBA 3SWJA 3CP3A 3KYGA 1CI0A 3K86A 3R5RA 3R5PA 1WLKA 4MTKA 2HQ9A 2NR4A 4HMXA 4HMUA 5ESCA 5JABA 3CB0A 4HMVA 2D36A 3VY5A 1FLMA 2RDEA 3A6RA 3R5YA 3HE1A 1USCA 2AQ6A 1DNLA 1G76A 3FGEA 2QEAA 3F7EA 1W3PA 3VY2A 3K88A 4XHYA 2FHQA 4YWNA 2FG9A 4HMWA 3R5WA 1T9MA 2ARZA 3AWHA 3DMBA 1WLIA 2HTIA 4HMTA 3ZOEA 3U0IA 4Z85A 2K4QA 2E83A 1G77A 3BA3A 1W3RA 1YLNA 4XJ2A 2Q9KA 4HMSA 4HX6A 3NFWA 5CHOA 4YBNA 2X1JA 2IABA 2D5MA 1XHNA 1W9AA 3U35A 3ZOFA 2GUJA 5BNCA 3A20A 3B5MA 2IMLA 4F07A 2I51A 1Y12A 3AMFA 1W3OA 2GJGA 3RH7A 3U34A 4TV4A 1AXJA 1W3QA 1RZ0A 2OL5A 1USFA 4UHVA 1Y30A 2ASFA 2HHZA 1RZ1A 2VPAA 1NRGA 2R0XA 2HQ7A 2I02A 2R6VA 2QCKA 2OU5A 2ECRA 3V4HA 3HMZA 2HTDA 2P5ZX 3EAAA 3ZOHA 1XXOA 3PFTA 1I0RA 3E4VA 1YOAA 3TGVA 1I0SA 2RE7A 3ZOGA 3GASA 3R5ZA 2IG6A 1G79A 3BPKA 4R82A 4QVBA 3VYAA 3DNHA 2D38A 4IRAA 2L1TA 3R5LA 1G78A 3FKHA 3H96A 2X1KA 2D37A 1WV4A 5CHEC 4Y9IA 3IN6A 2ECUA 4N7RC 3DB0A 3EC6A 1TY9A 3BNKA 2PTFA 1JNWA 1EJEA 3ZODA
chains in the Genus database with same CATH topology
4ZKYA 3HY8A 3ZOCA 2A2JA 4L82A 2ED4A 3KYFA 1RFEA 3U5WA 2FURA 3A6QA 1VL7A 3K87A 1WGBA 3SWJA 3CP3A 3KYGA 1CI0A 3K86A 3R5RA 3R5PA 1WLKA 2HQ9A 2NR4A 4HMXA 4HMUA 5ESCA 5JABA 3CB0A 4HMVA 2D36A 3VY5A 1FLMA 2RDEA 3A6RA 3R5YA 1USCA 2AQ6A 1DNLA 1G76A 3FGEA 2QEAA 3F7EA 1W3PA 3VY2A 3K88A 4XHYA 2FHQA 4YWNA 2FG9A 4HMWA 3R5WA 1T9MA 2ARZA 3AWHA 3DMBA 1WLIA 2HTIA 4HMTA 3ZOEA 3U0IA 4Z85A 2E83A 1G77A 3BA3A 1W3RA 1YLNA 4XJ2A 2Q9KA 4HMSA 4HX6A 3NFWA 5CHOA 4YBNA 2X1JA 2IABA 2D5MA 1XHNA 1W9AA 3U35A 3ZOFA 5BNCA 3A20A 3B5MA 2IMLA 4F07A 2I51A 3AMFA 1W3OA 2GJGA 3RH7A 3U34A 1AXJA 1W3QA 1RZ0A 2OL5A 1USFA 1Y30A 2ASFA 2HHZA 1RZ1A 2VPAA 1NRGA 2R0XA 2HQ7A 2I02A 2R6VA 2QCKA 2OU5A 2ECRA 3HMZA 2HTDA 3ZOHA 1XXOA 3PFTA 1I0RA 3E4VA 1YOAA 3TGVA 1I0SA 2RE7A 3ZOGA 3GASA 3R5ZA 2IG6A 1G79A 3BPKA 4R82A 4QVBA 3VYAA 3DNHA 2D38A 4IRAA 3R5LA 1G78A 3FKHA 3H96A 2X1KA 2D37A 1WV4A 5CHEC 4Y9IA 3IN6A 2ECUA 4N7RC 3DB0A 3EC6A 1TY9A 3BNKA 2PTFA 1JNWA 1EJEA 3ZODA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZKY A;  3HY8 A;  3ZOC A;  2A2J A;  4L82 A;  2ED4 A;  3KYF A;  1RFE A;  3U5W A;  2FUR A;  3A6Q A;  1VL7 A;  3K87 A;  1WGB A;  3SWJ A;  3CP3 A;  3KYG A;  1CI0 A;  3K86 A;  3R5R A;  3R5P A;  1WLK A;  2HQ9 A;  2NR4 A;  4HMX A;  4HMU A;  5ESC A;  5JAB A;  3CB0 A;  4HMV A;  2D36 A;  3VY5 A;  1FLM A;  2RDE A;  3A6R A;  3R5Y A;  1USC A;  2AQ6 A;  1DNL A;  1G76 A;  3FGE A;  2QEA A;  3F7E A;  1W3P A;  3VY2 A;  3K88 A;  4XHY A;  2FHQ A;  4YWN A;  2FG9 A;  4HMW A;  3R5W A;  1T9M A;  2ARZ A;  3AWH A;  3DMB A;  1WLI A;  2HTI A;  4HMT A;  3ZOE A;  3U0I A;  4Z85 A;  2E83 A;  1G77 A;  3BA3 A;  1W3R A;  1YLN A;  4XJ2 A;  2Q9K A;  4HMS A;  4HX6 A;  3NFW A;  5CHO A;  4YBN A;  2X1J A;  2IAB A;  2D5M A;  1XHN A;  1W9A A;  3U35 A;  3ZOF A;  5BNC A;  3A20 A;  3B5M A;  2IML A;  4F07 A;  2I51 A;  3AMF A;  1W3O A;  2GJG A;  3RH7 A;  3U34 A;  1AXJ A;  1W3Q A;  1RZ0 A;  2OL5 A;  1USF A;  1Y30 A;  2ASF A;  2HHZ A;  1RZ1 A;  2VPA A;  1NRG A;  2R0X A;  2HQ7 A;  2I02 A;  2R6V A;  2QCK A;  2OU5 A;  2ECR A;  3HMZ A;  2HTD A;  3ZOH A;  1XXO A;  3PFT A;  1I0R A;  3E4V A;  1YOA A;  3TGV A;  1I0S A;  2RE7 A;  3ZOG A;  3GAS A;  3R5Z A;  2IG6 A;  1G79 A;  3BPK A;  4R82 A;  4QVB A;  3VYA A;  3DNH A;  2D38 A;  4IRA A;  3R5L A;  1G78 A;  3FKH A;  3H96 A;  2X1K A;  2D37 A;  1WV4 A;  5CHE C;  4Y9I A;  3IN6 A;  2ECU A;  4N7R C;  3DB0 A;  3EC6 A;  1TY9 A;  3BNK A;  2PTF A;  1JNW A;  1EJE A;  3ZOD A; 
#chains in the Genus database with same CATH topology
 4ZKY A;  3HY8 A;  3ZOC A;  2A2J A;  4L82 A;  2ED4 A;  4W64 A;  3KYF A;  1RFE A;  3U5W A;  2FUR A;  4HKH A;  3A6Q A;  1VL7 A;  3K87 A;  1WGB A;  3SWJ A;  3CP3 A;  3KYG A;  1CI0 A;  3K86 A;  3R5R A;  3R5P A;  1WLK A;  4MTK A;  2HQ9 A;  2NR4 A;  4HMX A;  4HMU A;  5ESC A;  5JAB A;  3CB0 A;  4HMV A;  2D36 A;  3VY5 A;  1FLM A;  2RDE A;  3A6R A;  3R5Y A;  3HE1 A;  1USC A;  2AQ6 A;  1DNL A;  1G76 A;  3FGE A;  2QEA A;  3F7E A;  1W3P A;  3VY2 A;  3K88 A;  4XHY A;  2FHQ A;  4YWN A;  2FG9 A;  4HMW A;  3R5W A;  1T9M A;  2ARZ A;  3AWH A;  3DMB A;  1WLI A;  2HTI A;  4HMT A;  3ZOE A;  3U0I A;  4Z85 A;  2K4Q A;  2E83 A;  1G77 A;  3BA3 A;  1W3R A;  1YLN A;  4XJ2 A;  2Q9K A;  4HMS A;  4HX6 A;  3NFW A;  5CHO A;  4YBN A;  2X1J A;  2IAB A;  2D5M A;  1XHN A;  1W9A A;  3U35 A;  3ZOF A;  2GUJ A;  5BNC A;  3A20 A;  3B5M A;  2IML A;  4F07 A;  2I51 A;  1Y12 A;  3AMF A;  1W3O A;  2GJG A;  3RH7 A;  3U34 A;  4TV4 A;  1AXJ A;  1W3Q A;  1RZ0 A;  2OL5 A;  1USF A;  4UHV A;  1Y30 A;  2ASF A;  2HHZ A;  1RZ1 A;  2VPA A;  1NRG A;  2R0X A;  2HQ7 A;  2I02 A;  2R6V A;  2QCK A;  2OU5 A;  2ECR A;  3V4H A;  3HMZ A;  2HTD A;  2P5Z X;  3EAA A;  3ZOH A;  1XXO A;  3PFT A;  1I0R A;  3E4V A;  1YOA A;  3TGV A;  1I0S A;  2RE7 A;  3ZOG A;  3GAS A;  3R5Z A;  2IG6 A;  1G79 A;  3BPK A;  4R82 A;  4QVB A;  3VYA A;  3DNH A;  2D38 A;  4IRA A;  2L1T A;  3R5L A;  1G78 A;  3FKH A;  3H96 A;  2X1K A;  2D37 A;  1WV4 A;  5CHE C;  4Y9I A;  3IN6 A;  2ECU A;  4N7R C;  3DB0 A;  3EC6 A;  1TY9 A;  3BNK A;  2PTF A;  1JNW A;  1EJE A;  3ZOD A; 
#chains in the Genus database with same CATH homology
 4ZKY A;  3HY8 A;  3ZOC A;  2A2J A;  4L82 A;  2ED4 A;  3KYF A;  1RFE A;  3U5W A;  2FUR A;  3A6Q A;  1VL7 A;  3K87 A;  1WGB A;  3SWJ A;  3CP3 A;  3KYG A;  1CI0 A;  3K86 A;  3R5R A;  3R5P A;  1WLK A;  2HQ9 A;  2NR4 A;  4HMX A;  4HMU A;  5ESC A;  5JAB A;  3CB0 A;  4HMV A;  2D36 A;  3VY5 A;  1FLM A;  2RDE A;  3A6R A;  3R5Y A;  1USC A;  2AQ6 A;  1DNL A;  1G76 A;  3FGE A;  2QEA A;  3F7E A;  1W3P A;  3VY2 A;  3K88 A;  4XHY A;  2FHQ A;  4YWN A;  2FG9 A;  4HMW A;  3R5W A;  1T9M A;  2ARZ A;  3AWH A;  3DMB A;  1WLI A;  2HTI A;  4HMT A;  3ZOE A;  3U0I A;  4Z85 A;  2E83 A;  1G77 A;  3BA3 A;  1W3R A;  1YLN A;  4XJ2 A;  2Q9K A;  4HMS A;  4HX6 A;  3NFW A;  5CHO A;  4YBN A;  2X1J A;  2IAB A;  2D5M A;  1XHN A;  1W9A A;  3U35 A;  3ZOF A;  5BNC A;  3A20 A;  3B5M A;  2IML A;  4F07 A;  2I51 A;  3AMF A;  1W3O A;  2GJG A;  3RH7 A;  3U34 A;  1AXJ A;  1W3Q A;  1RZ0 A;  2OL5 A;  1USF A;  1Y30 A;  2ASF A;  2HHZ A;  1RZ1 A;  2VPA A;  1NRG A;  2R0X A;  2HQ7 A;  2I02 A;  2R6V A;  2QCK A;  2OU5 A;  2ECR A;  3HMZ A;  2HTD A;  3ZOH A;  1XXO A;  3PFT A;  1I0R A;  3E4V A;  1YOA A;  3TGV A;  1I0S A;  2RE7 A;  3ZOG A;  3GAS A;  3R5Z A;  2IG6 A;  1G79 A;  3BPK A;  4R82 A;  4QVB A;  3VYA A;  3DNH A;  2D38 A;  4IRA A;  3R5L A;  1G78 A;  3FKH A;  3H96 A;  2X1K A;  2D37 A;  1WV4 A;  5CHE C;  4Y9I A;  3IN6 A;  2ECU A;  4N7R C;  3DB0 A;  3EC6 A;  1TY9 A;  3BNK A;  2PTF A;  1JNW A;  1EJE A;  3ZOD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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