1W81A

Crystal structure of apical membrane antigen 1 from plasmodium vivax
Total Genus 93
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
434
structure length
364
Chain Sequence
SIPTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDAEVENAKYRIPAGRCPVFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVQNSNYRHPAVYDEKEKTCHMLYLSAQENMGFCFKPDKDESFENLVYLSKNVRNDWDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASASDQFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEIEREIKGERIVLPRIFISNDKESIKCPCEPERISQSTCNFYVCNCVEKRAEIKENNQVVIKEEFRDYY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords APICAL MEMBRANE ANTIGEN 1
publication title Crystal Structure of the Malaria Vaccine Candidate Apical Membrane Antigen 1
pubmed doi rcsb
source organism Plasmodium vivax
molecule tags Antigen
total genus 93
structure length 364
sequence length 434
ec nomenclature
pdb deposition date 2004-09-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1w81A02
2Q8AA 2QJ2A 2Q8BA 5CT3A 3HMSA 5CS3A 3HMTA 2YIOA 5COEA 1NK1A 1YXEA 5CS9A 1HKYA 2QJ4A 4R1CA 1Z40A 3MKPA 1W81A 4Z0FA 1W8KA 4IUAA 2F83A 2LL4M 3ZLEA 3HMRA 3SRIA 5CT1A 1GMNA 4R1BA 4UV6A 3SP8A 1GMOA 2YIPA 2X2ZA 5CP9A 2LL3A 5CSQA 1BHTA 4APLA 4DURA 3HN4A 5EODA 2Z8VA 5CT2A 5I25A 2J8JA 5CS5A 5EOKA 2K13X 4Z0DA 2Y8RA 4Z0EA 2J8LA 4UAOA 3ZWZA 4APMA 5CS1A 2HGFA 3SRJA 1I8NA 2YILA 1GP9A 2Z8WA 4R1AA 4R19A 4A5TS 4Z09A
chains in the Genus database with same CATH superfamily
2Q8AA 2QJ2A 2Q8BA 5CT3A 3HMSA 5CS3A 3HMTA 2YIOA 5COEA 1NK1A 1YXEA 5CS9A 1HKYA 2QJ4A 4R1CA 1Z40A 3MKPA 1W81A 4Z0FA 1W8KA 4IUAA 2F83A 2LL4M 3ZLEA 3HMRA 3SRIA 5CT1A 1GMNA 4R1BA 4UV6A 3SP8A 1GMOA 2YIPA 2X2ZA 4YIZA 5CP9A 2KL5A 2LL3A 5CSQA 1BHTA 4APLA 4DURA 3HN4A 5EODA 2Z8VA 5CT2A 5I25A 2J8JA 5CS5A 5EOKA 2K13X 4Z0DA 2Y8RA 4Z0EA 2J8LA 4UAOA 3ZWZA 4APMA 5CS1A 2HGFA 3SRJA 1I8NA 2YILA 1GP9A 2Z8WA 4R1AA 4R19A 4A5TS 4YIVA 4Z09A
chains in the Genus database with same CATH topology
2Q8AA 2QJ2A 2Q8BA 5CT3A 3HMSA 5CS3A 3HMTA 2YIOA 5COEA 1NK1A 1YXEA 5CS9A 1HKYA 2QJ4A 4R1CA 1Z40A 3MKPA 1W81A 4Z0FA 1W8KA 4IUAA 2F83A 2LL4M 3ZLEA 3HMRA 3SRIA 5CT1A 1GMNA 4R1BA 4UV6A 3SP8A 1GMOA 2YIPA 2X2ZA 4YIZA 5CP9A 2KL5A 2LL3A 5CSQA 1BHTA 4APLA 4DURA 3HN4A 5EODA 2Z8VA 5CT2A 5I25A 2J8JA 5CS5A 5EOKA 2K13X 4Z0DA 2Y8RA 4Z0EA 2J8LA 4UAOA 3ZWZA 4APMA 5CS1A 2HGFA 3SRJA 1I8NA 2YILA 1GP9A 2Z8WA 4R1AA 4R19A 4A5TS 4YIVA 4Z09A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q8A A;  2QJ2 A;  2Q8B A;  5CT3 A;  3HMS A;  5CS3 A;  3HMT A;  2YIO A;  5COE A;  1NK1 A;  1YXE A;  5CS9 A;  1HKY A;  2QJ4 A;  4R1C A;  1Z40 A;  3MKP A;  1W81 A;  4Z0F A;  1W8K A;  4IUA A;  2F83 A;  2LL4 M;  3ZLE A;  3HMR A;  3SRI A;  5CT1 A;  1GMN A;  4R1B A;  4UV6 A;  3SP8 A;  1GMO A;  2YIP A;  2X2Z A;  5CP9 A;  2LL3 A;  5CSQ A;  1BHT A;  4APL A;  4DUR A;  3HN4 A;  5EOD A;  2Z8V A;  5CT2 A;  5I25 A;  2J8J A;  5CS5 A;  5EOK A;  2K13 X;  4Z0D A;  2Y8R A;  4Z0E A;  2J8L A;  4UAO A;  3ZWZ A;  4APM A;  5CS1 A;  2HGF A;  3SRJ A;  1I8N A;  2YIL A;  1GP9 A;  2Z8W A;  4R1A A;  4R19 A;  4A5T S;  4Z09 A; 
#chains in the Genus database with same CATH topology
 2Q8A A;  2QJ2 A;  2Q8B A;  5CT3 A;  3HMS A;  5CS3 A;  3HMT A;  2YIO A;  5COE A;  1NK1 A;  1YXE A;  5CS9 A;  1HKY A;  2QJ4 A;  4R1C A;  1Z40 A;  3MKP A;  1W81 A;  4Z0F A;  1W8K A;  4IUA A;  2F83 A;  2LL4 M;  3ZLE A;  3HMR A;  3SRI A;  5CT1 A;  1GMN A;  4R1B A;  4UV6 A;  3SP8 A;  1GMO A;  2YIP A;  2X2Z A;  4YIZ A;  5CP9 A;  2KL5 A;  2LL3 A;  5CSQ A;  1BHT A;  4APL A;  4DUR A;  3HN4 A;  5EOD A;  2Z8V A;  5CT2 A;  5I25 A;  2J8J A;  5CS5 A;  5EOK A;  2K13 X;  4Z0D A;  2Y8R A;  4Z0E A;  2J8L A;  4UAO A;  3ZWZ A;  4APM A;  5CS1 A;  2HGF A;  3SRJ A;  1I8N A;  2YIL A;  1GP9 A;  2Z8W A;  4R1A A;  4R19 A;  4A5T S;  4YIV A;  4Z09 A; 
#chains in the Genus database with same CATH homology
 2Q8A A;  2QJ2 A;  2Q8B A;  5CT3 A;  3HMS A;  5CS3 A;  3HMT A;  2YIO A;  5COE A;  1NK1 A;  1YXE A;  5CS9 A;  1HKY A;  2QJ4 A;  4R1C A;  1Z40 A;  3MKP A;  1W81 A;  4Z0F A;  1W8K A;  4IUA A;  2F83 A;  2LL4 M;  3ZLE A;  3HMR A;  3SRI A;  5CT1 A;  1GMN A;  4R1B A;  4UV6 A;  3SP8 A;  1GMO A;  2YIP A;  2X2Z A;  4YIZ A;  5CP9 A;  2KL5 A;  2LL3 A;  5CSQ A;  1BHT A;  4APL A;  4DUR A;  3HN4 A;  5EOD A;  2Z8V A;  5CT2 A;  5I25 A;  2J8J A;  5CS5 A;  5EOK A;  2K13 X;  4Z0D A;  2Y8R A;  4Z0E A;  2J8L A;  4UAO A;  3ZWZ A;  4APM A;  5CS1 A;  2HGF A;  3SRJ A;  1I8N A;  2YIL A;  1GP9 A;  2Z8W A;  4R1A A;  4R19 A;  4A5T S;  4YIV A;  4Z09 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...