1W8KA

Crystal structure of apical membrane antigen 1 from plasmodium vivax
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
433
structure length
362
Chain Sequence
PTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDAEVENAKYRIPAGRCPVFGKGIVIENSDVSFLRPVATGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVSNYRHPAVYDEKEKTCHMLYLSAQENMYCSDAVFCFKPDKDESFENLVYLSKNVRNDWDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASASDQPTFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEIEREIKKQERIVLPRIFISNDKESIKCPCEPERISQSTCNFYVCNCVEKRAEIKENNQVVIKEEFRDYYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords APICAL MEMBRANE ANTIGEN 1
publication title Crystal Structure of the Malaria Vaccine Candidate Apical Membrane Antigen 1
pubmed doi rcsb
source organism Plasmodium vivax
molecule tags Antigen
total genus 105
structure length 362
sequence length 433
ec nomenclature
pdb deposition date 2004-09-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1w8kA02
2QJ2A 1GMNA 1W8KA 4IUAA 4R1CA 2QJ4A 5CS5A 3MKPA 4UV6A 5CP9A 5EODA 1BHTA 2LL3A 2HGFA 2Q8BA 2YILA 5CS3A 3SP8A 1NK1A 1W81A 1Z40A 2K13X 2J8JA 4APMA 5CS1A 5CT3A 3ZLEA 4R1AA 5COEA 4A5TS 3HMTA 2Y8RA 2YIPA 4Z0FA 5CS9A 1GP9A 5I25A 5CT1A 4Z0EA 5EOKA 3ZWZA 2Q8AA 4Z09A 2F83A 2YIOA 1I8NA 2X2ZA 4R1BA 4UAOA 4DURA 4R19A 4APLA 5CSQA 3HN4A 1GMOA 2J8LA 4Z0DA 2LL4M 1HKYA 1YXEA 2Z8VA 3HMRA 3HMSA 3SRJA 5CT2A 2Z8WA 3SRIA
chains in the Genus database with same CATH superfamily
2QJ2A 1GMNA 1W8KA 4IUAA 4R1CA 2QJ4A 5CS5A 3MKPA 4UV6A 5CP9A 5EODA 1BHTA 2LL3A 2HGFA 2Q8BA 2YILA 5CS3A 3SP8A 1NK1A 1W81A 1Z40A 2K13X 2J8JA 4APMA 5CS1A 5CT3A 3ZLEA 4R1AA 5COEA 4A5TS 3HMTA 2Y8RA 2YIPA 4Z0FA 5CS9A 1GP9A 4YIVA 5I25A 5CT1A 4Z0EA 5EOKA 3ZWZA 2Q8AA 4Z09A 2F83A 2YIOA 1I8NA 2X2ZA 4R1BA 4UAOA 4DURA 4R19A 4APLA 5CSQA 3HN4A 1GMOA 2J8LA 2KL5A 4Z0DA 2LL4M 1HKYA 1YXEA 2Z8VA 3HMRA 3HMSA 3SRJA 5CT2A 2Z8WA 4YIZA 3SRIA
chains in the Genus database with same CATH topology
2QJ2A 1GMNA 1W8KA 4IUAA 4R1CA 2QJ4A 5CS5A 3MKPA 4UV6A 5CP9A 5EODA 1BHTA 2LL3A 2HGFA 2Q8BA 2YILA 5CS3A 3SP8A 1NK1A 1W81A 1Z40A 2K13X 2J8JA 4APMA 5CS1A 5CT3A 3ZLEA 4R1AA 5COEA 4A5TS 3HMTA 2Y8RA 2YIPA 4Z0FA 5CS9A 1GP9A 4YIVA 5I25A 5CT1A 4Z0EA 5EOKA 3ZWZA 2Q8AA 4Z09A 2F83A 2YIOA 1I8NA 2X2ZA 4R1BA 4UAOA 4DURA 4R19A 4APLA 5CSQA 3HN4A 1GMOA 2J8LA 2KL5A 4Z0DA 2LL4M 1HKYA 1YXEA 2Z8VA 3HMRA 3HMSA 3SRJA 5CT2A 2Z8WA 4YIZA 3SRIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJ2 A;  1GMN A;  1W8K A;  4IUA A;  4R1C A;  2QJ4 A;  5CS5 A;  3MKP A;  4UV6 A;  5CP9 A;  5EOD A;  1BHT A;  2LL3 A;  2HGF A;  2Q8B A;  2YIL A;  5CS3 A;  3SP8 A;  1NK1 A;  1W81 A;  1Z40 A;  2K13 X;  2J8J A;  4APM A;  5CS1 A;  5CT3 A;  3ZLE A;  4R1A A;  5COE A;  4A5T S;  3HMT A;  2Y8R A;  2YIP A;  4Z0F A;  5CS9 A;  1GP9 A;  5I25 A;  5CT1 A;  4Z0E A;  5EOK A;  3ZWZ A;  2Q8A A;  4Z09 A;  2F83 A;  2YIO A;  1I8N A;  2X2Z A;  4R1B A;  4UAO A;  4DUR A;  4R19 A;  4APL A;  5CSQ A;  3HN4 A;  1GMO A;  2J8L A;  4Z0D A;  2LL4 M;  1HKY A;  1YXE A;  2Z8V A;  3HMR A;  3HMS A;  3SRJ A;  5CT2 A;  2Z8W A;  3SRI A; 
#chains in the Genus database with same CATH topology
 2QJ2 A;  1GMN A;  1W8K A;  4IUA A;  4R1C A;  2QJ4 A;  5CS5 A;  3MKP A;  4UV6 A;  5CP9 A;  5EOD A;  1BHT A;  2LL3 A;  2HGF A;  2Q8B A;  2YIL A;  5CS3 A;  3SP8 A;  1NK1 A;  1W81 A;  1Z40 A;  2K13 X;  2J8J A;  4APM A;  5CS1 A;  5CT3 A;  3ZLE A;  4R1A A;  5COE A;  4A5T S;  3HMT A;  2Y8R A;  2YIP A;  4Z0F A;  5CS9 A;  1GP9 A;  4YIV A;  5I25 A;  5CT1 A;  4Z0E A;  5EOK A;  3ZWZ A;  2Q8A A;  4Z09 A;  2F83 A;  2YIO A;  1I8N A;  2X2Z A;  4R1B A;  4UAO A;  4DUR A;  4R19 A;  4APL A;  5CSQ A;  3HN4 A;  1GMO A;  2J8L A;  2KL5 A;  4Z0D A;  2LL4 M;  1HKY A;  1YXE A;  2Z8V A;  3HMR A;  3HMS A;  3SRJ A;  5CT2 A;  2Z8W A;  4YIZ A;  3SRI A; 
#chains in the Genus database with same CATH homology
 2QJ2 A;  1GMN A;  1W8K A;  4IUA A;  4R1C A;  2QJ4 A;  5CS5 A;  3MKP A;  4UV6 A;  5CP9 A;  5EOD A;  1BHT A;  2LL3 A;  2HGF A;  2Q8B A;  2YIL A;  5CS3 A;  3SP8 A;  1NK1 A;  1W81 A;  1Z40 A;  2K13 X;  2J8J A;  4APM A;  5CS1 A;  5CT3 A;  3ZLE A;  4R1A A;  5COE A;  4A5T S;  3HMT A;  2Y8R A;  2YIP A;  4Z0F A;  5CS9 A;  1GP9 A;  4YIV A;  5I25 A;  5CT1 A;  4Z0E A;  5EOK A;  3ZWZ A;  2Q8A A;  4Z09 A;  2F83 A;  2YIO A;  1I8N A;  2X2Z A;  4R1B A;  4UAO A;  4DUR A;  4R19 A;  4APL A;  5CSQ A;  3HN4 A;  1GMO A;  2J8L A;  2KL5 A;  4Z0D A;  2LL4 M;  1HKY A;  1YXE A;  2Z8V A;  3HMR A;  3HMS A;  3SRJ A;  5CT2 A;  2Z8W A;  4YIZ A;  3SRI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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