1WADA

Cytochrome c3 with 4 heme groups and one calcium ion
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
111
structure length
111
Chain Sequence
VDVPADGAKIDFIAGGEKNLTVVFNHSTHKDVKCDDCHHDPGDKQYAGCTTDGCHNILDKADKSVNSWYKVVHDAKGGAKPTCISCHKDKAGDDKELKKKLTGCKGSACHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C3
publication title Cytochrome c3 from Desulfovibrio gigas: crystal structure at 1.8 A resolution and evidence for a specific calcium-binding site.
pubmed rcsb
total genus 23
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 1996-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02085 Cytochrom_CIII Class III cytochrome C family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1wadA00
2CDVA 1UPDA 1GWSA 1EHJA 2CTHA 1OFWA 1HH5A 3H33A 2MZ9A 1I77A 3OUEA 3CYRA 1DUWA 4HDLA 1QN1A 1WADA 2FFNA 2A3PA 2BPNA 3SJ1X 3CAOA 4HB6A 1J0PA 3CARA 2LDOA 3SJ0X 2CVCA 1UP9A 1H29A 1NEWA 1J0OA 4HC3A 2N91A 2CY3A 3OV0A 1WR5A 1AQEA 1GMBA 1IT1A 3OUQA 1Z1NX 2E84A 2KMYA 4HBFA 3SJ4X 3H4NA 1GYOA 1L3OA 2EWUA 1F22A 1QN0A 2BQ4A 2YXCA 1RWJA 1GM4A 1A2IA 4HB8A 4HAJA 1OS6A 2EWIA 1LM2A 2KSUA 3H34A 1KWJA 2LZZA 1W7OA 2CYMA 2YYWA 3BXUA 3SELX 2Z47A 19HCA 2A3MA 1MDVA 2EWKA 1OFYA 2YYXA 1CZJA
chains in the Genus database with same CATH superfamily
2CDVA 1UPDA 1GWSA 1EHJA 2CTHA 1OFWA 1HH5A 3H33A 2MZ9A 1I77A 3OUEA 3CYRA 1DUWA 4HDLA 1QN1A 1WADA 2FFNA 2A3PA 2BPNA 3SJ1X 3CAOA 4HB6A 1J0PA 3CARA 2LDOA 3SJ0X 2CVCA 1UP9A 1H29A 1NEWA 1J0OA 4HC3A 2N91A 2CY3A 3OV0A 1WR5A 1AQEA 1GMBA 1IT1A 3OUQA 1Z1NX 2E84A 2KMYA 4HBFA 3SJ4X 3H4NA 1GYOA 1L3OA 2EWUA 1F22A 1QN0A 2BQ4A 2YXCA 1RWJA 1GM4A 1A2IA 4HB8A 4HAJA 1OS6A 2EWIA 1LM2A 2KSUA 3H34A 1KWJA 2LZZA 1W7OA 2CYMA 2YYWA 3BXUA 3SELX 2Z47A 19HCA 2A3MA 1MDVA 2EWKA 1OFYA 2YYXA 1CZJA
chains in the Genus database with same CATH topology
2CDVA 1UPDA 1GWSA 1EHJA 2CTHA 1OFWA 1HH5A 3H33A 2MZ9A 1I77A 3OUEA 3CYRA 1DUWA 4HDLA 1QN1A 1WADA 2FFNA 2A3PA 2BPNA 3SJ1X 3CAOA 4HB6A 1J0PA 3CARA 2LDOA 3SJ0X 2CVCA 1UP9A 1H29A 1NEWA 1J0OA 4HC3A 2N91A 2CY3A 3OV0A 1WR5A 1AQEA 1GMBA 1IT1A 3OUQA 1Z1NX 2E84A 2KMYA 4HBFA 3SJ4X 3H4NA 1GYOA 1L3OA 2EWUA 1F22A 1QN0A 2BQ4A 2YXCA 1RWJA 1GM4A 1A2IA 4HB8A 4HAJA 1OS6A 2EWIA 1LM2A 2KSUA 3H34A 1KWJA 2LZZA 1W7OA 2CYMA 2YYWA 3BXUA 3SELX 2Z47A 19HCA 2A3MA 1MDVA 2EWKA 1OFYA 2YYXA 1CZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CDV A;  1UPD A;  1GWS A;  1EHJ A;  2CTH A;  1OFW A;  1HH5 A;  3H33 A;  2MZ9 A;  1I77 A;  3OUE A;  3CYR A;  1DUW A;  4HDL A;  1QN1 A;  1WAD A;  2FFN A;  2A3P A;  2BPN A;  3SJ1 X;  3CAO A;  4HB6 A;  1J0P A;  3CAR A;  2LDO A;  3SJ0 X;  2CVC A;  1UP9 A;  1H29 A;  1NEW A;  1J0O A;  4HC3 A;  2N91 A;  2CY3 A;  3OV0 A;  1WR5 A;  1AQE A;  1GMB A;  1IT1 A;  3OUQ A;  1Z1N X;  2E84 A;  2KMY A;  4HBF A;  3SJ4 X;  3H4N A;  1GYO A;  1L3O A;  2EWU A;  1F22 A;  1QN0 A;  2BQ4 A;  2YXC A;  1RWJ A;  1GM4 A;  1A2I A;  4HB8 A;  4HAJ A;  1OS6 A;  2EWI A;  1LM2 A;  2KSU A;  3H34 A;  1KWJ A;  2LZZ A;  1W7O A;  2CYM A;  2YYW A;  3BXU A;  3SEL X;  2Z47 A;  19HC A;  2A3M A;  1MDV A;  2EWK A;  1OFY A;  2YYX A;  1CZJ A; 
#chains in the Genus database with same CATH topology
 2CDV A;  1UPD A;  1GWS A;  1EHJ A;  2CTH A;  1OFW A;  1HH5 A;  3H33 A;  2MZ9 A;  1I77 A;  3OUE A;  3CYR A;  1DUW A;  4HDL A;  1QN1 A;  1WAD A;  2FFN A;  2A3P A;  2BPN A;  3SJ1 X;  3CAO A;  4HB6 A;  1J0P A;  3CAR A;  2LDO A;  3SJ0 X;  2CVC A;  1UP9 A;  1H29 A;  1NEW A;  1J0O A;  4HC3 A;  2N91 A;  2CY3 A;  3OV0 A;  1WR5 A;  1AQE A;  1GMB A;  1IT1 A;  3OUQ A;  1Z1N X;  2E84 A;  2KMY A;  4HBF A;  3SJ4 X;  3H4N A;  1GYO A;  1L3O A;  2EWU A;  1F22 A;  1QN0 A;  2BQ4 A;  2YXC A;  1RWJ A;  1GM4 A;  1A2I A;  4HB8 A;  4HAJ A;  1OS6 A;  2EWI A;  1LM2 A;  2KSU A;  3H34 A;  1KWJ A;  2LZZ A;  1W7O A;  2CYM A;  2YYW A;  3BXU A;  3SEL X;  2Z47 A;  19HC A;  2A3M A;  1MDV A;  2EWK A;  1OFY A;  2YYX A;  1CZJ A; 
#chains in the Genus database with same CATH homology
 2CDV A;  1UPD A;  1GWS A;  1EHJ A;  2CTH A;  1OFW A;  1HH5 A;  3H33 A;  2MZ9 A;  1I77 A;  3OUE A;  3CYR A;  1DUW A;  4HDL A;  1QN1 A;  1WAD A;  2FFN A;  2A3P A;  2BPN A;  3SJ1 X;  3CAO A;  4HB6 A;  1J0P A;  3CAR A;  2LDO A;  3SJ0 X;  2CVC A;  1UP9 A;  1H29 A;  1NEW A;  1J0O A;  4HC3 A;  2N91 A;  2CY3 A;  3OV0 A;  1WR5 A;  1AQE A;  1GMB A;  1IT1 A;  3OUQ A;  1Z1N X;  2E84 A;  2KMY A;  4HBF A;  3SJ4 X;  3H4N A;  1GYO A;  1L3O A;  2EWU A;  1F22 A;  1QN0 A;  2BQ4 A;  2YXC A;  1RWJ A;  1GM4 A;  1A2I A;  4HB8 A;  4HAJ A;  1OS6 A;  2EWI A;  1LM2 A;  2KSU A;  3H34 A;  1KWJ A;  2LZZ A;  1W7O A;  2CYM A;  2YYW A;  3BXU A;  3SEL X;  2Z47 A;  19HC A;  2A3M A;  1MDV A;  2EWK A;  1OFY A;  2YYX A;  1CZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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