1WAQA

Crystal structure of human growth and differentiation factor 5 (gdf-5)
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
ARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Growth factor
molecule keywords GROWTH/DIFFERENTIATION FACTOR 5
publication title A Single Residue of Gdf-5 Defines Binding Specificity to Bmp Receptor Ib.
pubmed doi rcsb
source organism Homo sapiens
total genus 18
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2004-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1waqA00
1FZVA 4EDXV 1BTGA 4UI0A 5BQ8A 5BQ8B 1QTYR 5HHDA 5BQEA 3V6BA 5HI5A 4HQUA 1REUA 3S1BV 3JVFA 1FLTV 1XWDA 2QR0C 1XWDB 3BK3A 5FV1V 3HH2A 4GLSE 5F3BC 4KXZA 1HD4A 1B98A 2XACA 4KV5A 2X1WA 3FUBB 3EVSB 3SEKB 1M4UL 1KTZA 2GH0C 2ASKA 1SGFB 5HK5E 2V5EB 3BUKA 2C7WA 4EFVA 3QB4A 1KLAA 1QFWA 1BETA 5HHXA 5BQCA 1TFGA 1WWWV 4ZFFC 3P9WA 1CZ8V 5BPUA 4MQWA 1WQ8A 2R52A 4MQWB 5BQEB 4BV4L 4HQXA 4QHUC 5AEJA 1JPYA 1DZ7A 2TGIA 5JZ7A 4MPLA 2QCWA 1PDGA 1LXIA 2FJHV 4HR9A 4EDWV 1HCNA 5HI4A 4HSAA 1VPPV 1BJ1V 2H62A 1ES7A 3RJRA 3S1KV 2P6AA 4LXRJ 2PJYA 2QJBA 1TGJA 3EO1C 2GYZA 2QCQA 4X1JA 2VWEA 2QJ9A 1QFWB 4N1DA 5HHVA 1SG1A 1AOCA 2XV7A 2FJGV 5E4GA 5FV2V 3KFDA 3BDYV 1BNDA 3V2AA 1BNDB 4GLNE 2IFGE 5HI3A 1NYSB 2KD3A 2VXSA 2H64A 2BHKA 4ZBNA 3BMPA 1VPFA 1MKGA 3QTKA 4EAXA 1KLCA 1NYUB 4UHZA 4YCGC 1REWA 1HCNB 1BMPA 2R53A 5HK5A 4LXSJ 5BQBA 1WQ9A 1WQ9B 1MKKA 1B8KA 5BQ8D 2QJAA 1HRPA 1FL7A 1FL7B 1HRPB 2B0UA 2GOOA 4YCIC 1WAQA 4FAOA 4UI2B 2GYRA 4MIDA 4QCIC 2GNNA 3E07A 5HHCA 1HCFA 3MJKA 1AGQA 4WPBA 3MJGA 1NT3A 1B8MA 1B8MB 1RV6V 1LX5A 1TZHV 2ARPA 1ZKZA 1M4UA 4KZNA 3B4VA 2ARVA 4EC7A 1S4YB 1TGKA 4UI1A 2VPFA 1KATW 4QAFC 4AY9A 5F3HI 2X1XE 4AY9B 4XPJA 1E9JA 3IJ2A 4UHYA 1MJVA 1TZIV
chains in the Genus database with same CATH superfamily
1FZVA 4EDXV 1BTGA 4UI0A 5BQ8A 5BQ8B 1QTYR 5HHDA 5BQEA 3V6BA 5HI5A 4HQUA 1REUA 3S1BV 3JVFA 1FLTV 1XWDA 2QR0C 1XWDB 3BK3A 5FV1V 3HH2A 4GLSE 5F3BC 4KXZA 1HD4A 1B98A 2XACA 4KV5A 2X1WA 3FUBB 3EVSB 3SEKB 1M4UL 1KTZA 2GH0C 2ASKA 1SGFB 5HK5E 2V5EB 3BUKA 2C7WA 4EFVA 3QB4A 1KLAA 1QFWA 1BETA 5HHXA 5BQCA 1TFGA 1WWWV 4ZFFC 3P9WA 1CZ8V 5BPUA 4MQWA 1WQ8A 2R52A 4MQWB 5BQEB 4BV4L 4HQXA 4QHUC 5AEJA 1JPYA 1DZ7A 2TGIA 5JZ7A 4MPLA 2QCWA 1PDGA 1LXIA 2FJHV 4HR9A 4EDWV 1HCNA 5HI4A 4HSAA 1VPPV 1BJ1V 2H62A 1ES7A 3RJRA 3S1KV 2P6AA 4LXRJ 2PJYA 2QJBA 1TGJA 3EO1C 2GYZA 2QCQA 4X1JA 2VWEA 2QJ9A 1QFWB 4N1DA 5HHVA 1SG1A 1AOCA 2XV7A 2FJGV 5E4GA 5FV2V 3KFDA 3BDYV 1BNDA 3V2AA 1BNDB 4GLNE 2IFGE 5HI3A 1NYSB 2KD3A 2VXSA 2H64A 2BHKA 4ZBNA 3BMPA 1VPFA 1MKGA 3QTKA 4EAXA 1KLCA 1NYUB 4UHZA 4YCGC 1REWA 1HCNB 1BMPA 2R53A 5HK5A 4LXSJ 5BQBA 1WQ9A 1WQ9B 1MKKA 1B8KA 5BQ8D 2QJAA 1HRPA 1FL7A 1FL7B 1HRPB 2B0UA 2GOOA 4YCIC 1WAQA 4FAOA 4UI2B 2GYRA 4MIDA 4QCIC 2GNNA 3E07A 5HHCA 1HCFA 3MJKA 1AGQA 4WPBA 3MJGA 1NT3A 1B8MA 1B8MB 1RV6V 1LX5A 1TZHV 2ARPA 1ZKZA 1M4UA 4KZNA 3B4VA 2ARVA 4EC7A 1S4YB 1TGKA 4UI1A 2VPFA 1KATW 4QAFC 4AY9A 5F3HI 2X1XE 4AY9B 4XPJA 1E9JA 3IJ2A 4UHYA 1MJVA 1TZIV
chains in the Genus database with same CATH topology
1FZVA 4EDXV 1BTGA 4UI0A 5BQ8A 5BQ8B 1QTYR 5HHDA 5BQEA 3V6BA 5HI5A 4HQUA 1REUA 3S1BV 3JVFA 1FLTV 1XWDA 2QR0C 1XWDB 3BK3A 5FV1V 3HH2A 4GLSE 5F3BC 4KXZA 1HD4A 1B98A 2XACA 4KV5A 2X1WA 3FUBB 3EVSB 3SEKB 1M4UL 1KTZA 2GH0C 2ASKA 1SGFB 5HK5E 2V5EB 3BUKA 2C7WA 4EFVA 3QB4A 1KLAA 1QFWA 1BETA 5HHXA 5BQCA 1TFGA 1WWWV 4ZFFC 3P9WA 1CZ8V 5BPUA 4MQWA 1WQ8A 2R52A 4MQWB 5BQEB 4BV4L 4HQXA 4QHUC 5AEJA 1JPYA 1DZ7A 2TGIA 5JZ7A 4MPLA 2QCWA 1PDGA 1LXIA 2FJHV 4HR9A 4EDWV 1HCNA 5HI4A 4HSAA 1VPPV 1BJ1V 2H62A 1ES7A 3RJRA 3S1KV 2P6AA 4LXRJ 2PJYA 2QJBA 1TGJA 3EO1C 2GYZA 2QCQA 4X1JA 2VWEA 2QJ9A 1QFWB 4N1DA 5HHVA 1SG1A 1AOCA 2XV7A 2FJGV 5E4GA 5FV2V 3KFDA 3BDYV 1BNDA 3V2AA 1BNDB 4GLNE 2IFGE 5HI3A 1NYSB 2KD3A 2VXSA 2H64A 2BHKA 4ZBNA 3BMPA 1VPFA 1MKGA 3QTKA 4EAXA 1KLCA 1NYUB 4UHZA 4YCGC 1REWA 1HCNB 1BMPA 2R53A 5HK5A 4LXSJ 5BQBA 1WQ9A 1WQ9B 1MKKA 1B8KA 5BQ8D 2QJAA 1HRPA 1FL7A 1FL7B 1HRPB 2B0UA 2GOOA 4YCIC 1WAQA 4FAOA 4UI2B 2GYRA 4MIDA 4QCIC 2GNNA 3E07A 5HHCA 1HCFA 3MJKA 1AGQA 4WPBA 3MJGA 1NT3A 1B8MA 1B8MB 1RV6V 1LX5A 1TZHV 2ARPA 1ZKZA 1M4UA 4KZNA 3B4VA 2ARVA 4EC7A 1S4YB 1TGKA 4UI1A 2VPFA 1KATW 4QAFC 4AY9A 5F3HI 2X1XE 4AY9B 4XPJA 1E9JA 3IJ2A 4UHYA 1MJVA 1TZIV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZV A;  4EDX V;  1BTG A;  4UI0 A;  5BQ8 A;  5BQ8 B;  1QTY R;  5HHD A;  5BQE A;  3V6B A;  5HI5 A;  4HQU A;  1REU A;  3S1B V;  3JVF A;  1FLT V;  1XWD A;  2QR0 C;  1XWD B;  3BK3 A;  5FV1 V;  3HH2 A;  4GLS E;  5F3B C;  4KXZ A;  1HD4 A;  1B98 A;  2XAC A;  4KV5 A;  2X1W A;  3FUB B;  3EVS B;  3SEK B;  1M4U L;  1KTZ A;  2GH0 C;  2ASK A;  1SGF B;  5HK5 E;  2V5E B;  3BUK A;  2C7W A;  4EFV A;  3QB4 A;  1KLA A;  1QFW A;  1BET A;  5HHX A;  5BQC A;  1TFG A;  1WWW V;  4ZFF C;  3P9W A;  1CZ8 V;  5BPU A;  4MQW A;  1WQ8 A;  2R52 A;  4MQW B;  5BQE B;  4BV4 L;  4HQX A;  4QHU C;  5AEJ A;  1JPY A;  1DZ7 A;  2TGI A;  5JZ7 A;  4MPL A;  2QCW A;  1PDG A;  1LXI A;  2FJH V;  4HR9 A;  4EDW V;  1HCN A;  5HI4 A;  4HSA A;  1VPP V;  1BJ1 V;  2H62 A;  1ES7 A;  3RJR A;  3S1K V;  2P6A A;  4LXR J;  2PJY A;  2QJB A;  1TGJ A;  3EO1 C;  2GYZ A;  2QCQ A;  4X1J A;  2VWE A;  2QJ9 A;  1QFW B;  4N1D A;  5HHV A;  1SG1 A;  1AOC A;  2XV7 A;  2FJG V;  5E4G A;  5FV2 V;  3KFD A;  3BDY V;  1BND A;  3V2A A;  1BND B;  4GLN E;  2IFG E;  5HI3 A;  1NYS B;  2KD3 A;  2VXS A;  2H64 A;  2BHK A;  4ZBN A;  3BMP A;  1VPF A;  1MKG A;  3QTK A;  4EAX A;  1KLC A;  1NYU B;  4UHZ A;  4YCG C;  1REW A;  1HCN B;  1BMP A;  2R53 A;  5HK5 A;  4LXS J;  5BQB A;  1WQ9 A;  1WQ9 B;  1MKK A;  1B8K A;  5BQ8 D;  2QJA A;  1HRP A;  1FL7 A;  1FL7 B;  1HRP B;  2B0U A;  2GOO A;  4YCI C;  1WAQ A;  4FAO A;  4UI2 B;  2GYR A;  4MID A;  4QCI C;  2GNN A;  3E07 A;  5HHC A;  1HCF A;  3MJK A;  1AGQ A;  4WPB A;  3MJG A;  1NT3 A;  1B8M A;  1B8M B;  1RV6 V;  1LX5 A;  1TZH V;  2ARP A;  1ZKZ A;  1M4U A;  4KZN A;  3B4V A;  2ARV A;  4EC7 A;  1S4Y B;  1TGK A;  4UI1 A;  2VPF A;  1KAT W;  4QAF C;  4AY9 A;  5F3H I;  2X1X E;  4AY9 B;  4XPJ A;  1E9J A;  3IJ2 A;  4UHY A;  1MJV A;  1TZI V; 
#chains in the Genus database with same CATH topology
 1FZV A;  4EDX V;  1BTG A;  4UI0 A;  5BQ8 A;  5BQ8 B;  1QTY R;  5HHD A;  5BQE A;  3V6B A;  5HI5 A;  4HQU A;  1REU A;  3S1B V;  3JVF A;  1FLT V;  1XWD A;  2QR0 C;  1XWD B;  3BK3 A;  5FV1 V;  3HH2 A;  4GLS E;  5F3B C;  4KXZ A;  1HD4 A;  1B98 A;  2XAC A;  4KV5 A;  2X1W A;  3FUB B;  3EVS B;  3SEK B;  1M4U L;  1KTZ A;  2GH0 C;  2ASK A;  1SGF B;  5HK5 E;  2V5E B;  3BUK A;  2C7W A;  4EFV A;  3QB4 A;  1KLA A;  1QFW A;  1BET A;  5HHX A;  5BQC A;  1TFG A;  1WWW V;  4ZFF C;  3P9W A;  1CZ8 V;  5BPU A;  4MQW A;  1WQ8 A;  2R52 A;  4MQW B;  5BQE B;  4BV4 L;  4HQX A;  4QHU C;  5AEJ A;  1JPY A;  1DZ7 A;  2TGI A;  5JZ7 A;  4MPL A;  2QCW A;  1PDG A;  1LXI A;  2FJH V;  4HR9 A;  4EDW V;  1HCN A;  5HI4 A;  4HSA A;  1VPP V;  1BJ1 V;  2H62 A;  1ES7 A;  3RJR A;  3S1K V;  2P6A A;  4LXR J;  2PJY A;  2QJB A;  1TGJ A;  3EO1 C;  2GYZ A;  2QCQ A;  4X1J A;  2VWE A;  2QJ9 A;  1QFW B;  4N1D A;  5HHV A;  1SG1 A;  1AOC A;  2XV7 A;  2FJG V;  5E4G A;  5FV2 V;  3KFD A;  3BDY V;  1BND A;  3V2A A;  1BND B;  4GLN E;  2IFG E;  5HI3 A;  1NYS B;  2KD3 A;  2VXS A;  2H64 A;  2BHK A;  4ZBN A;  3BMP A;  1VPF A;  1MKG A;  3QTK A;  4EAX A;  1KLC A;  1NYU B;  4UHZ A;  4YCG C;  1REW A;  1HCN B;  1BMP A;  2R53 A;  5HK5 A;  4LXS J;  5BQB A;  1WQ9 A;  1WQ9 B;  1MKK A;  1B8K A;  5BQ8 D;  2QJA A;  1HRP A;  1FL7 A;  1FL7 B;  1HRP B;  2B0U A;  2GOO A;  4YCI C;  1WAQ A;  4FAO A;  4UI2 B;  2GYR A;  4MID A;  4QCI C;  2GNN A;  3E07 A;  5HHC A;  1HCF A;  3MJK A;  1AGQ A;  4WPB A;  3MJG A;  1NT3 A;  1B8M A;  1B8M B;  1RV6 V;  1LX5 A;  1TZH V;  2ARP A;  1ZKZ A;  1M4U A;  4KZN A;  3B4V A;  2ARV A;  4EC7 A;  1S4Y B;  1TGK A;  4UI1 A;  2VPF A;  1KAT W;  4QAF C;  4AY9 A;  5F3H I;  2X1X E;  4AY9 B;  4XPJ A;  1E9J A;  3IJ2 A;  4UHY A;  1MJV A;  1TZI V; 
#chains in the Genus database with same CATH homology
 1FZV A;  4EDX V;  1BTG A;  4UI0 A;  5BQ8 A;  5BQ8 B;  1QTY R;  5HHD A;  5BQE A;  3V6B A;  5HI5 A;  4HQU A;  1REU A;  3S1B V;  3JVF A;  1FLT V;  1XWD A;  2QR0 C;  1XWD B;  3BK3 A;  5FV1 V;  3HH2 A;  4GLS E;  5F3B C;  4KXZ A;  1HD4 A;  1B98 A;  2XAC A;  4KV5 A;  2X1W A;  3FUB B;  3EVS B;  3SEK B;  1M4U L;  1KTZ A;  2GH0 C;  2ASK A;  1SGF B;  5HK5 E;  2V5E B;  3BUK A;  2C7W A;  4EFV A;  3QB4 A;  1KLA A;  1QFW A;  1BET A;  5HHX A;  5BQC A;  1TFG A;  1WWW V;  4ZFF C;  3P9W A;  1CZ8 V;  5BPU A;  4MQW A;  1WQ8 A;  2R52 A;  4MQW B;  5BQE B;  4BV4 L;  4HQX A;  4QHU C;  5AEJ A;  1JPY A;  1DZ7 A;  2TGI A;  5JZ7 A;  4MPL A;  2QCW A;  1PDG A;  1LXI A;  2FJH V;  4HR9 A;  4EDW V;  1HCN A;  5HI4 A;  4HSA A;  1VPP V;  1BJ1 V;  2H62 A;  1ES7 A;  3RJR A;  3S1K V;  2P6A A;  4LXR J;  2PJY A;  2QJB A;  1TGJ A;  3EO1 C;  2GYZ A;  2QCQ A;  4X1J A;  2VWE A;  2QJ9 A;  1QFW B;  4N1D A;  5HHV A;  1SG1 A;  1AOC A;  2XV7 A;  2FJG V;  5E4G A;  5FV2 V;  3KFD A;  3BDY V;  1BND A;  3V2A A;  1BND B;  4GLN E;  2IFG E;  5HI3 A;  1NYS B;  2KD3 A;  2VXS A;  2H64 A;  2BHK A;  4ZBN A;  3BMP A;  1VPF A;  1MKG A;  3QTK A;  4EAX A;  1KLC A;  1NYU B;  4UHZ A;  4YCG C;  1REW A;  1HCN B;  1BMP A;  2R53 A;  5HK5 A;  4LXS J;  5BQB A;  1WQ9 A;  1WQ9 B;  1MKK A;  1B8K A;  5BQ8 D;  2QJA A;  1HRP A;  1FL7 A;  1FL7 B;  1HRP B;  2B0U A;  2GOO A;  4YCI C;  1WAQ A;  4FAO A;  4UI2 B;  2GYR A;  4MID A;  4QCI C;  2GNN A;  3E07 A;  5HHC A;  1HCF A;  3MJK A;  1AGQ A;  4WPB A;  3MJG A;  1NT3 A;  1B8M A;  1B8M B;  1RV6 V;  1LX5 A;  1TZH V;  2ARP A;  1ZKZ A;  1M4U A;  4KZN A;  3B4V A;  2ARV A;  4EC7 A;  1S4Y B;  1TGK A;  4UI1 A;  2VPF A;  1KAT W;  4QAF C;  4AY9 A;  5F3H I;  2X1X E;  4AY9 B;  4XPJ A;  1E9J A;  3IJ2 A;  4UHY A;  1MJV A;  1TZI V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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