1WC9A

The crystal structure of truncated mouse bet3p
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
160
structure length
160
Chain Sequence
KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT3
publication title Crystal Structure of Bet3 Reveals a Novel Mechanism for Golgi Localization of Tethering Factor Trapp
pubmed doi rcsb
source organism Mus musculus
total genus 49
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2004-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 1wc9A01
3NJCA 3CUEB 2BJNA 3KXCA 2J3WD 2J3TA 1SZ7A 1WC8A 2J3TB 2OSDA 2CFHC 2C0JA 3KXCC 2J3WB 2C0JB 3CUED 2OSOA 1WC9A 2J3RA 2J3RB 2CFHA 2PWNA
chains in the Genus database with same CATH superfamily
1LBUA 2WFQA 2WG3A 3N1OA 3CUEB 3N1PB 3NJCA 4NT9A 2BJNA 1TZPA 3KXCA 2J3WD 4C4NA 2J3TA 3K7IB 4MUQA 3K7JB 4F78A 1SZ7A 1WC8A 4OAKA 1R44A 3N1GA 3N1QA 2IBGE 2J3TB 2OSDA 3D1MA 2CFHC 3N1RA 4MURA 4OXDA 4C4MA 3K7HB 4MUSA 4D0YA 3N1MB 3K7GB 4MUTA 2C0JA 2VO9A 3MXWA 3KXCC 2J3WB 2C0JB 3CUED 2OSOA 3M1NA 3HO5H 4JIDA 1VHHA 2WFRA 4OX3A 2WG4A 1WC9A 2J3RA 3N1FA 4MPHA 4OX5A 1U10A 2J3RB 2WFXA 5HNMA 2CFHA 2PWNA
chains in the Genus database with same CATH topology
3NJCA 3CUEB 2BJNA 3KXCA 2J3WD 2J3TA 1SZ7A 1WC8A 2J3TB 2OSDA 2CFHC 2C0JA 3KXCC 2J3WB 2C0JB 3CUED 2OSOA 1WC9A 2J3RA 2J3RB 2CFHA 2PWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NJC A;  3CUE B;  2BJN A;  3KXC A;  2J3W D;  2J3T A;  1SZ7 A;  1WC8 A;  2J3T B;  2OSD A;  2CFH C;  2C0J A;  3KXC C;  2J3W B;  2C0J B;  3CUE D;  2OSO A;  1WC9 A;  2J3R A;  2J3R B;  2CFH A;  2PWN A; 
#chains in the Genus database with same CATH topology
 1LBU A;  2WFQ A;  2WG3 A;  3N1O A;  3CUE B;  3N1P B;  3NJC A;  4NT9 A;  2BJN A;  1TZP A;  3KXC A;  2J3W D;  4C4N A;  2J3T A;  3K7I B;  4MUQ A;  3K7J B;  4F78 A;  1SZ7 A;  1WC8 A;  4OAK A;  1R44 A;  3N1G A;  3N1Q A;  2IBG E;  2J3T B;  2OSD A;  3D1M A;  2CFH C;  3N1R A;  4MUR A;  4OXD A;  4C4M A;  3K7H B;  4MUS A;  4D0Y A;  3N1M B;  3K7G B;  4MUT A;  2C0J A;  2VO9 A;  3MXW A;  3KXC C;  2J3W B;  2C0J B;  3CUE D;  2OSO A;  3M1N A;  3HO5 H;  4JID A;  1VHH A;  2WFR A;  4OX3 A;  2WG4 A;  1WC9 A;  2J3R A;  3N1F A;  4MPH A;  4OX5 A;  1U10 A;  2J3R B;  2WFX A;  5HNM A;  2CFH A;  2PWN A; 
#chains in the Genus database with same CATH homology
 3NJC A;  3CUE B;  2BJN A;  3KXC A;  2J3W D;  2J3T A;  1SZ7 A;  1WC8 A;  2J3T B;  2OSD A;  2CFH C;  2C0J A;  3KXC C;  2J3W B;  2C0J B;  3CUE D;  2OSO A;  1WC9 A;  2J3R A;  2J3R B;  2CFH A;  2PWN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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