1WDEA

Crystal structure of the conserved hypothetical protein ape0931 from aeropyrum pernix k1
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
289
structure length
289
Chain Sequence
b'EAVTLLLVGWGYAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQRRPLEYDRSVYETVEENCKKGVYMEPV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb
source organism Aeropyrum pernix
molecule tags Transferase
total genus 91
structure length 289
sequence length 289
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1wdeA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1wdeA01
2P5CA 2E8HA 2PB4A 4E16A 2HUXA 2EGBA 1PJQA 2YBOA 1CBFA 2EMRA 2PCGA 2P9DA 2PCAA 3I4TA 2EJZA 2EH4A 2DXVA 1PJTA 3HH1A 2PB6A 2DV3A 2EMUA 3KWPA 2ED5A 2Z6RA 2YBQA 2ENIA 2P2XA 2EH5A 2EGSA 2DV7A 2EKAA 2E8SA 1PJSA 3NEIA 1VCEA 2DSHA 2NPNA 2P6DA 2PCIA 3NDCA 2DSGA 2EN5A 1V9AA 2EGLA 2HUQA 2EH2A 2DEKA 2PCMA 2QBUA 2EK4A 2ELEA 2EEQA 2E16A 2DXXA 2E8QA 2DV5A 2DXWA 2E08A 2HR8A 2PCHA 2E7RA 2E8RA 3FFYA 1S4DA 2ELDA 2DV4A 2P6KA 2EJKA 2BB3A 2EL1A 2PCKA 2OWGA 3FQ6A 2EJJA 2EL2A 2EK3A 2OWKA 1WDEA 2EL3A 2ZVBA 2EL0A 2P5FA 2E0KA 3NUTA 2CBFA 5HW4A 1VHVA 2E15A 2E4RA 2EK7A 1WNGA 2HUTA 2EHLA 2DSIA 2OWVA 1VE2A 2ED3A 2EK2A 2OWUA 2EHCA 2E07A 2HUVA 2E4NA 2PB5A 1VA0A 2P6IA 2P6LA 2OWFA 2ZVCA 2E0NA 1WYZA 3ND1A 2E17A
chains in the Genus database with same CATH superfamily
2P5CA 2E8HA 3UTCA 2PB4A 4E16A 2HUXA 2EGBA 1PJQA 2YBOA 4MV0A 1CBFA 2EMRA 2PCGA 2P9DA 2PCAA 3I4TA 3SZUA 2EJZA 2EH4A 3UWMA 2DXVA 4N7BA 3ZGLA 1PJTA 3HH1A 2PB6A 4H4DA 2DV3A 2EMUA 3KWPA 2ED5A 4H4CA 2Z6RA 3KE9A 2YBQA 2ENIA 3KELA 2P2XA 2EH5A 2EGSA 3KE8A 2DV7A 2EKAA 2E8SA 1PJSA 3NEIA 1VCEA 2DSHA 2NPNA 3F7TA 3T0GA 2P6DA 3LMMA 2PCIA 3NDCA 2DSGA 2EN5A 1V9AA 2EGLA 2HUQA 2EH2A 2DEKA 2PCMA 2QBUA 2EK4A 2ELEA 2EEQA 2E16A 2DXXA 2E8QA 2DV5A 2DXWA 2E08A 3SZOA 2HR8A 2PCHA 2E7RA 2E8RA 3URKA 3FFYA 1S4DA 2ELDA 2DV4A 2P6KA 2EJKA 4EB3A 2BB3A 2EL1A 2PCKA 2OWGA 3KEMA 3FQ6A 3SZLA 2EJJA 2EL2A 3KEFA 3UTDA 2EK3A 4H4EA 2OWKA 1WDEA 2EL3A 2ZVBA 2EL0A 2P5FA 2E0KA 3NUTA 2CBFA 5HW4A 3UV6A 3DNFA 3ZGNA 1VHVA 2E15A 2E4RA 2EK7A 1WNGA 2HUTA 2EHLA 2DSIA 2OWVA 1VE2A 2ED3A 2EK2A 2KYYA 2OWUA 4MUYA 2EHCA 2E07A 2HUVA 2E4NA 3UV3A 3UV7A 4MUXA 4MV5A 2PB5A 1VA0A 2P6IA 2P6LA 3TIXB 2OWFA 2ZVCA 2E0NA 1WYZA 3T0FA 3ND1A 2E17A
chains in the Genus database with same CATH topology
2P5CA 2E8HA 3UTCA 2PB4A 4E16A 2HUXA 2EGBA 1PJQA 2YBOA 4MV0A 1CBFA 2EMRA 2PCGA 2P9DA 2PCAA 3I4TA 3SZUA 2EJZA 2EH4A 3UWMA 2DXVA 4N7BA 3ZGLA 1PJTA 3HH1A 2PB6A 4H4DA 2DV3A 2EMUA 3KWPA 2ED5A 4H4CA 2Z6RA 3KE9A 2YBQA 2ENIA 3KELA 2P2XA 2EH5A 2EGSA 3KE8A 2DV7A 2EKAA 2E8SA 1PJSA 3NEIA 1VCEA 2DSHA 2NPNA 3F7TA 3T0GA 2P6DA 3LMMA 2PCIA 3NDCA 2DSGA 2EN5A 1V9AA 2EGLA 2HUQA 2EH2A 2DEKA 2PCMA 2QBUA 2EK4A 2ELEA 2EEQA 2E16A 2DXXA 2E8QA 2DV5A 2DXWA 2E08A 3SZOA 2HR8A 2PCHA 2E7RA 2E8RA 3URKA 3FFYA 1S4DA 2ELDA 2DV4A 2P6KA 2EJKA 4EB3A 2BB3A 2EL1A 2PCKA 2OWGA 3KEMA 3FQ6A 3SZLA 2EJJA 2EL2A 3KEFA 3UTDA 2EK3A 4H4EA 2OWKA 1WDEA 2EL3A 2ZVBA 2EL0A 2P5FA 2E0KA 3NUTA 2CBFA 5HW4A 3UV6A 3DNFA 3ZGNA 1VHVA 2E15A 2E4RA 2EK7A 1WNGA 2HUTA 2EHLA 2DSIA 2OWVA 1VE2A 2ED3A 2EK2A 2KYYA 2OWUA 4MUYA 2EHCA 2E07A 2HUVA 2E4NA 3UV3A 3UV7A 4MUXA 4MV5A 2PB5A 1VA0A 2P6IA 2P6LA 3TIXB 2OWFA 2ZVCA 2E0NA 1WYZA 3T0FA 3ND1A 2E17A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P5C A;  2E8H A;  2PB4 A;  4E16 A;  2HUX A;  2EGB A;  1PJQ A;  2YBO A;  1CBF A;  2EMR A;  2PCG A;  2P9D A;  2PCA A;  3I4T A;  2EJZ A;  2EH4 A;  2DXV A;  1PJT A;  3HH1 A;  2PB6 A;  2DV3 A;  2EMU A;  3KWP A;  2ED5 A;  2Z6R A;  2YBQ A;  2ENI A;  2P2X A;  2EH5 A;  2EGS A;  2DV7 A;  2EKA A;  2E8S A;  1PJS A;  3NEI A;  1VCE A;  2DSH A;  2NPN A;  2P6D A;  2PCI A;  3NDC A;  2DSG A;  2EN5 A;  1V9A A;  2EGL A;  2HUQ A;  2EH2 A;  2DEK A;  2PCM A;  2QBU A;  2EK4 A;  2ELE A;  2EEQ A;  2E16 A;  2DXX A;  2E8Q A;  2DV5 A;  2DXW A;  2E08 A;  2HR8 A;  2PCH A;  2E7R A;  2E8R A;  3FFY A;  1S4D A;  2ELD A;  2DV4 A;  2P6K A;  2EJK A;  2BB3 A;  2EL1 A;  2PCK A;  2OWG A;  3FQ6 A;  2EJJ A;  2EL2 A;  2EK3 A;  2OWK A;  1WDE A;  2EL3 A;  2ZVB A;  2EL0 A;  2P5F A;  2E0K A;  3NUT A;  2CBF A;  5HW4 A;  1VHV A;  2E15 A;  2E4R A;  2EK7 A;  1WNG A;  2HUT A;  2EHL A;  2DSI A;  2OWV A;  1VE2 A;  2ED3 A;  2EK2 A;  2OWU A;  2EHC A;  2E07 A;  2HUV A;  2E4N A;  2PB5 A;  1VA0 A;  2P6I A;  2P6L A;  2OWF A;  2ZVC A;  2E0N A;  1WYZ A;  3ND1 A;  2E17 A; 
#chains in the Genus database with same CATH topology
 2P5C A;  2E8H A;  3UTC A;  2PB4 A;  4E16 A;  2HUX A;  2EGB A;  1PJQ A;  2YBO A;  4MV0 A;  1CBF A;  2EMR A;  2PCG A;  2P9D A;  2PCA A;  3I4T A;  3SZU A;  2EJZ A;  2EH4 A;  3UWM A;  2DXV A;  4N7B A;  3ZGL A;  1PJT A;  3HH1 A;  2PB6 A;  4H4D A;  2DV3 A;  2EMU A;  3KWP A;  2ED5 A;  4H4C A;  2Z6R A;  3KE9 A;  2YBQ A;  2ENI A;  3KEL A;  2P2X A;  2EH5 A;  2EGS A;  3KE8 A;  2DV7 A;  2EKA A;  2E8S A;  1PJS A;  3NEI A;  1VCE A;  2DSH A;  2NPN A;  3F7T A;  3T0G A;  2P6D A;  3LMM A;  2PCI A;  3NDC A;  2DSG A;  2EN5 A;  1V9A A;  2EGL A;  2HUQ A;  2EH2 A;  2DEK A;  2PCM A;  2QBU A;  2EK4 A;  2ELE A;  2EEQ A;  2E16 A;  2DXX A;  2E8Q A;  2DV5 A;  2DXW A;  2E08 A;  3SZO A;  2HR8 A;  2PCH A;  2E7R A;  2E8R A;  3URK A;  3FFY A;  1S4D A;  2ELD A;  2DV4 A;  2P6K A;  2EJK A;  4EB3 A;  2BB3 A;  2EL1 A;  2PCK A;  2OWG A;  3KEM A;  3FQ6 A;  3SZL A;  2EJJ A;  2EL2 A;  3KEF A;  3UTD A;  2EK3 A;  4H4E A;  2OWK A;  1WDE A;  2EL3 A;  2ZVB A;  2EL0 A;  2P5F A;  2E0K A;  3NUT A;  2CBF A;  5HW4 A;  3UV6 A;  3DNF A;  3ZGN A;  1VHV A;  2E15 A;  2E4R A;  2EK7 A;  1WNG A;  2HUT A;  2EHL A;  2DSI A;  2OWV A;  1VE2 A;  2ED3 A;  2EK2 A;  2KYY A;  2OWU A;  4MUY A;  2EHC A;  2E07 A;  2HUV A;  2E4N A;  3UV3 A;  3UV7 A;  4MUX A;  4MV5 A;  2PB5 A;  1VA0 A;  2P6I A;  2P6L A;  3TIX B;  2OWF A;  2ZVC A;  2E0N A;  1WYZ A;  3T0F A;  3ND1 A;  2E17 A; 
#chains in the Genus database with same CATH homology
 2P5C A;  2E8H A;  3UTC A;  2PB4 A;  4E16 A;  2HUX A;  2EGB A;  1PJQ A;  2YBO A;  4MV0 A;  1CBF A;  2EMR A;  2PCG A;  2P9D A;  2PCA A;  3I4T A;  3SZU A;  2EJZ A;  2EH4 A;  3UWM A;  2DXV A;  4N7B A;  3ZGL A;  1PJT A;  3HH1 A;  2PB6 A;  4H4D A;  2DV3 A;  2EMU A;  3KWP A;  2ED5 A;  4H4C A;  2Z6R A;  3KE9 A;  2YBQ A;  2ENI A;  3KEL A;  2P2X A;  2EH5 A;  2EGS A;  3KE8 A;  2DV7 A;  2EKA A;  2E8S A;  1PJS A;  3NEI A;  1VCE A;  2DSH A;  2NPN A;  3F7T A;  3T0G A;  2P6D A;  3LMM A;  2PCI A;  3NDC A;  2DSG A;  2EN5 A;  1V9A A;  2EGL A;  2HUQ A;  2EH2 A;  2DEK A;  2PCM A;  2QBU A;  2EK4 A;  2ELE A;  2EEQ A;  2E16 A;  2DXX A;  2E8Q A;  2DV5 A;  2DXW A;  2E08 A;  3SZO A;  2HR8 A;  2PCH A;  2E7R A;  2E8R A;  3URK A;  3FFY A;  1S4D A;  2ELD A;  2DV4 A;  2P6K A;  2EJK A;  4EB3 A;  2BB3 A;  2EL1 A;  2PCK A;  2OWG A;  3KEM A;  3FQ6 A;  3SZL A;  2EJJ A;  2EL2 A;  3KEF A;  3UTD A;  2EK3 A;  4H4E A;  2OWK A;  1WDE A;  2EL3 A;  2ZVB A;  2EL0 A;  2P5F A;  2E0K A;  3NUT A;  2CBF A;  5HW4 A;  3UV6 A;  3DNF A;  3ZGN A;  1VHV A;  2E15 A;  2E4R A;  2EK7 A;  1WNG A;  2HUT A;  2EHL A;  2DSI A;  2OWV A;  1VE2 A;  2ED3 A;  2EK2 A;  2KYY A;  2OWU A;  4MUY A;  2EHC A;  2E07 A;  2HUV A;  2E4N A;  3UV3 A;  3UV7 A;  4MUX A;  4MV5 A;  2PB5 A;  1VA0 A;  2P6I A;  2P6L A;  3TIX B;  2OWF A;  2ZVC A;  2E0N A;  1WYZ A;  3T0F A;  3ND1 A;  2E17 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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