1WDEA

Crystal structure of the conserved hypothetical protein ape0931 from aeropyrum pernix k1
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
289
structure length
289
Chain Sequence
EAVTLLLVGWGYAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQRRPLEYDRSVYETVEENCKKGVYMEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb
source organism Aeropyrum pernix
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 91
structure length 289
sequence length 289
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1wdeA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1wdeA01
2EK2A 2PB5A 2E8SA 1WDEA 2DV3A 2Z6RA 2EHLA 3FQ6A 2P9DA 2PB6A 3NDCA 2EJKA 1S4DA 2PCIA 2P5CA 2EK7A 2DXXA 2EGSA 4E16A 2E7RA 2EKAA 2EK3A 2EGLA 2E08A 1WYZA 2OWUA 2DSGA 2DV7A 2E0NA 2YBOA 2EEQA 2HUTA 2DXWA 1VA0A 1VHVA 2EJZA 3NUTA 2E07A 2ZVBA 2E0KA 1V9AA 2OWKA 2P5FA 2E8QA 1CBFA 2E15A 2EN5A 2EH4A 2E4RA 2EK4A 2E8HA 2EGBA 2HUQA 3I4TA 2PB4A 2HUXA 2ED3A 2PCAA 2EMRA 2DV4A 2EH2A 5HW4A 3HH1A 2HUVA 2EL2A 2ENIA 2P6KA 2P6LA 2ELEA 2EH5A 2DSIA 1VCEA 2E8RA 2E17A 1PJQA 2OWGA 2CBFA 2OWVA 2EMUA 2DV5A 3KWPA 2OWFA 3NEIA 3FFYA 2DSHA 2P6IA 2PCMA 2E16A 2ED5A 2DEKA 1VE2A 2PCKA 2P6DA 2EL1A 2ELDA 2EHCA 2EL3A 2YBQA 3ND1A 2E4NA 2QBUA 1WNGA 2NPNA 2EJJA 1PJTA 2DXVA 2ZVCA 2HR8A 2EL0A 1PJSA 2PCGA 2PCHA 2P2XA 2BB3A
chains in the Genus database with same CATH superfamily
2EK2A 3SZUA 2PB5A 2E8SA 1WDEA 2DV3A 2Z6RA 2EHLA 4H4DA 3FQ6A 2P9DA 2PB6A 3NDCA 2EJKA 1S4DA 2PCIA 3SZOA 2P5CA 2EK7A 2KYYA 2DXXA 2EGSA 4E16A 3F7TA 2E7RA 2EKAA 2EK3A 2EGLA 2E08A 1WYZA 3ZGLA 2OWUA 3KEFA 3KE8A 2DSGA 2DV7A 2E0NA 2YBOA 2EEQA 2HUTA 2DXWA 1VA0A 4H4CA 1VHVA 3UTDA 2EJZA 3NUTA 2E07A 4EB3A 3UTCA 2ZVBA 2E0KA 3ZGNA 1V9AA 2OWKA 2P5FA 2E8QA 1CBFA 2E15A 2EN5A 2EH4A 2E4RA 2EK4A 2E8HA 2EGBA 2HUQA 3I4TA 2PB4A 2HUXA 2ED3A 2PCAA 2EMRA 2DV4A 3URKA 3SZLA 2EH2A 5HW4A 3HH1A 2HUVA 2EL2A 2ENIA 2P6KA 2P6LA 2ELEA 2EH5A 2DSIA 1VCEA 2E8RA 3UV3A 2E17A 1PJQA 2OWGA 2CBFA 3LMMA 2OWVA 2EMUA 2DV5A 3KWPA 4N7BA 3T0GA 2OWFA 3NEIA 3FFYA 4MV0A 2DSHA 3UWMA 4H4EA 4MUXA 2P6IA 2PCMA 2E16A 3KE9A 4MV5A 2ED5A 2DEKA 1VE2A 3UV7A 2PCKA 2P6DA 2EL1A 2ELDA 2EHCA 2EL3A 2YBQA 3ND1A 2E4NA 2QBUA 4MUYA 1WNGA 3TIXB 2NPNA 2EJJA 3KEMA 1PJTA 2DXVA 2ZVCA 2HR8A 3UV6A 2EL0A 3KELA 1PJSA 2PCGA 3T0FA 3DNFA 2PCHA 2P2XA 2BB3A
chains in the Genus database with same CATH topology
2EK2A 3SZUA 2PB5A 2E8SA 1WDEA 2DV3A 2Z6RA 2EHLA 4H4DA 3FQ6A 2P9DA 2PB6A 3NDCA 2EJKA 1S4DA 2PCIA 3SZOA 2P5CA 2EK7A 2KYYA 2DXXA 2EGSA 4E16A 3F7TA 2E7RA 2EKAA 2EK3A 2EGLA 2E08A 1WYZA 3ZGLA 2OWUA 3KEFA 3KE8A 2DSGA 2DV7A 2E0NA 2YBOA 2EEQA 2HUTA 2DXWA 1VA0A 4H4CA 1VHVA 3UTDA 2EJZA 3NUTA 2E07A 4EB3A 3UTCA 2ZVBA 2E0KA 3ZGNA 1V9AA 2OWKA 2P5FA 2E8QA 1CBFA 2E15A 2EN5A 2EH4A 2E4RA 2EK4A 2E8HA 2EGBA 2HUQA 3I4TA 2PB4A 2HUXA 2ED3A 2PCAA 2EMRA 2DV4A 3URKA 3SZLA 2EH2A 5HW4A 3HH1A 2HUVA 2EL2A 2ENIA 2P6KA 2P6LA 2ELEA 2EH5A 2DSIA 1VCEA 2E8RA 3UV3A 2E17A 1PJQA 2OWGA 2CBFA 3LMMA 2OWVA 2EMUA 2DV5A 3KWPA 4N7BA 3T0GA 2OWFA 3NEIA 3FFYA 4MV0A 2DSHA 3UWMA 4H4EA 4MUXA 2P6IA 2PCMA 2E16A 3KE9A 4MV5A 2ED5A 2DEKA 1VE2A 3UV7A 2PCKA 2P6DA 2EL1A 2ELDA 2EHCA 2EL3A 2YBQA 3ND1A 2E4NA 2QBUA 4MUYA 1WNGA 3TIXB 2NPNA 2EJJA 3KEMA 1PJTA 2DXVA 2ZVCA 2HR8A 3UV6A 2EL0A 3KELA 1PJSA 2PCGA 3T0FA 3DNFA 2PCHA 2P2XA 2BB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EK2 A;  2PB5 A;  2E8S A;  1WDE A;  2DV3 A;  2Z6R A;  2EHL A;  3FQ6 A;  2P9D A;  2PB6 A;  3NDC A;  2EJK A;  1S4D A;  2PCI A;  2P5C A;  2EK7 A;  2DXX A;  2EGS A;  4E16 A;  2E7R A;  2EKA A;  2EK3 A;  2EGL A;  2E08 A;  1WYZ A;  2OWU A;  2DSG A;  2DV7 A;  2E0N A;  2YBO A;  2EEQ A;  2HUT A;  2DXW A;  1VA0 A;  1VHV A;  2EJZ A;  3NUT A;  2E07 A;  2ZVB A;  2E0K A;  1V9A A;  2OWK A;  2P5F A;  2E8Q A;  1CBF A;  2E15 A;  2EN5 A;  2EH4 A;  2E4R A;  2EK4 A;  2E8H A;  2EGB A;  2HUQ A;  3I4T A;  2PB4 A;  2HUX A;  2ED3 A;  2PCA A;  2EMR A;  2DV4 A;  2EH2 A;  5HW4 A;  3HH1 A;  2HUV A;  2EL2 A;  2ENI A;  2P6K A;  2P6L A;  2ELE A;  2EH5 A;  2DSI A;  1VCE A;  2E8R A;  2E17 A;  1PJQ A;  2OWG A;  2CBF A;  2OWV A;  2EMU A;  2DV5 A;  3KWP A;  2OWF A;  3NEI A;  3FFY A;  2DSH A;  2P6I A;  2PCM A;  2E16 A;  2ED5 A;  2DEK A;  1VE2 A;  2PCK A;  2P6D A;  2EL1 A;  2ELD A;  2EHC A;  2EL3 A;  2YBQ A;  3ND1 A;  2E4N A;  2QBU A;  1WNG A;  2NPN A;  2EJJ A;  1PJT A;  2DXV A;  2ZVC A;  2HR8 A;  2EL0 A;  1PJS A;  2PCG A;  2PCH A;  2P2X A;  2BB3 A; 
#chains in the Genus database with same CATH topology
 2EK2 A;  3SZU A;  2PB5 A;  2E8S A;  1WDE A;  2DV3 A;  2Z6R A;  2EHL A;  4H4D A;  3FQ6 A;  2P9D A;  2PB6 A;  3NDC A;  2EJK A;  1S4D A;  2PCI A;  3SZO A;  2P5C A;  2EK7 A;  2KYY A;  2DXX A;  2EGS A;  4E16 A;  3F7T A;  2E7R A;  2EKA A;  2EK3 A;  2EGL A;  2E08 A;  1WYZ A;  3ZGL A;  2OWU A;  3KEF A;  3KE8 A;  2DSG A;  2DV7 A;  2E0N A;  2YBO A;  2EEQ A;  2HUT A;  2DXW A;  1VA0 A;  4H4C A;  1VHV A;  3UTD A;  2EJZ A;  3NUT A;  2E07 A;  4EB3 A;  3UTC A;  2ZVB A;  2E0K A;  3ZGN A;  1V9A A;  2OWK A;  2P5F A;  2E8Q A;  1CBF A;  2E15 A;  2EN5 A;  2EH4 A;  2E4R A;  2EK4 A;  2E8H A;  2EGB A;  2HUQ A;  3I4T A;  2PB4 A;  2HUX A;  2ED3 A;  2PCA A;  2EMR A;  2DV4 A;  3URK A;  3SZL A;  2EH2 A;  5HW4 A;  3HH1 A;  2HUV A;  2EL2 A;  2ENI A;  2P6K A;  2P6L A;  2ELE A;  2EH5 A;  2DSI A;  1VCE A;  2E8R A;  3UV3 A;  2E17 A;  1PJQ A;  2OWG A;  2CBF A;  3LMM A;  2OWV A;  2EMU A;  2DV5 A;  3KWP A;  4N7B A;  3T0G A;  2OWF A;  3NEI A;  3FFY A;  4MV0 A;  2DSH A;  3UWM A;  4H4E A;  4MUX A;  2P6I A;  2PCM A;  2E16 A;  3KE9 A;  4MV5 A;  2ED5 A;  2DEK A;  1VE2 A;  3UV7 A;  2PCK A;  2P6D A;  2EL1 A;  2ELD A;  2EHC A;  2EL3 A;  2YBQ A;  3ND1 A;  2E4N A;  2QBU A;  4MUY A;  1WNG A;  3TIX B;  2NPN A;  2EJJ A;  3KEM A;  1PJT A;  2DXV A;  2ZVC A;  2HR8 A;  3UV6 A;  2EL0 A;  3KEL A;  1PJS A;  2PCG A;  3T0F A;  3DNF A;  2PCH A;  2P2X A;  2BB3 A; 
#chains in the Genus database with same CATH homology
 2EK2 A;  3SZU A;  2PB5 A;  2E8S A;  1WDE A;  2DV3 A;  2Z6R A;  2EHL A;  4H4D A;  3FQ6 A;  2P9D A;  2PB6 A;  3NDC A;  2EJK A;  1S4D A;  2PCI A;  3SZO A;  2P5C A;  2EK7 A;  2KYY A;  2DXX A;  2EGS A;  4E16 A;  3F7T A;  2E7R A;  2EKA A;  2EK3 A;  2EGL A;  2E08 A;  1WYZ A;  3ZGL A;  2OWU A;  3KEF A;  3KE8 A;  2DSG A;  2DV7 A;  2E0N A;  2YBO A;  2EEQ A;  2HUT A;  2DXW A;  1VA0 A;  4H4C A;  1VHV A;  3UTD A;  2EJZ A;  3NUT A;  2E07 A;  4EB3 A;  3UTC A;  2ZVB A;  2E0K A;  3ZGN A;  1V9A A;  2OWK A;  2P5F A;  2E8Q A;  1CBF A;  2E15 A;  2EN5 A;  2EH4 A;  2E4R A;  2EK4 A;  2E8H A;  2EGB A;  2HUQ A;  3I4T A;  2PB4 A;  2HUX A;  2ED3 A;  2PCA A;  2EMR A;  2DV4 A;  3URK A;  3SZL A;  2EH2 A;  5HW4 A;  3HH1 A;  2HUV A;  2EL2 A;  2ENI A;  2P6K A;  2P6L A;  2ELE A;  2EH5 A;  2DSI A;  1VCE A;  2E8R A;  3UV3 A;  2E17 A;  1PJQ A;  2OWG A;  2CBF A;  3LMM A;  2OWV A;  2EMU A;  2DV5 A;  3KWP A;  4N7B A;  3T0G A;  2OWF A;  3NEI A;  3FFY A;  4MV0 A;  2DSH A;  3UWM A;  4H4E A;  4MUX A;  2P6I A;  2PCM A;  2E16 A;  3KE9 A;  4MV5 A;  2ED5 A;  2DEK A;  1VE2 A;  3UV7 A;  2PCK A;  2P6D A;  2EL1 A;  2ELD A;  2EHC A;  2EL3 A;  2YBQ A;  3ND1 A;  2E4N A;  2QBU A;  4MUY A;  1WNG A;  3TIX B;  2NPN A;  2EJJ A;  3KEM A;  1PJT A;  2DXV A;  2ZVC A;  2HR8 A;  3UV6 A;  2EL0 A;  3KEL A;  1PJS A;  2PCG A;  3T0F A;  3DNF A;  2PCH A;  2P2X A;  2BB3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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