1WDEA

Crystal structure of the conserved hypothetical protein ape0931 from aeropyrum pernix k1
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
289
structure length
289
Chain Sequence
EAVTLLLVGWGYAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRALDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQRRPLEYDRSVYETVEENCKKGVYMEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb
source organism Aeropyrum pernix
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 91
structure length 289
sequence length 289
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1wdeA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1wdeA01
2DSGA 2P6LA 2EN5A 3KWPA 2EL0A 2OWVA 2PB4A 3HH1A 2EKAA 2EHCA 2PCHA 1WYZA 2ELEA 2EHLA 2EK7A 2E0NA 2EMUA 3FQ6A 2P6DA 2EJZA 2E8SA 2PCMA 3NUTA 2DSIA 2DXXA 2P9DA 2CBFA 2ED5A 2E8QA 2Z6RA 2PB6A 2OWGA 2PCGA 2PCKA 1PJTA 3NDCA 2P5FA 1V9AA 2PCAA 2DV4A 2P2XA 2E7RA 2EMRA 2EK3A 2EL3A 2EK2A 2E17A 2DV3A 3NEIA 2PCIA 2ZVCA 2EGLA 2E8RA 2YBOA 2E4NA 1PJSA 2EH4A 2E8HA 2E15A 1WDEA 2OWUA 2HR8A 2EJJA 2ED3A 2HUVA 2PB5A 2DV7A 2DXWA 1CBFA 3I4TA 1VHVA 2E08A 1S4DA 2EL2A 2P5CA 2QBUA 2EH5A 2DV5A 2ENIA 2EJKA 1VA0A 2HUXA 3ND1A 2EGBA 2P6IA 1VCEA 2NPNA 1PJQA 2YBQA 2E0KA 1WNGA 1VE2A 5HW4A 2HUQA 2ELDA 2EEQA 2EL1A 2DXVA 3FFYA 2OWFA 2BB3A 2EGSA 2E07A 2HUTA 2E16A 2ZVBA 2E4RA 2OWKA 2DEKA 4E16A 2P6KA 2EH2A 2DSHA 2EK4A
chains in the Genus database with same CATH superfamily
2DSGA 3SZUA 3T0GA 2P6LA 2EN5A 3KWPA 2EL0A 2OWVA 2PB4A 3HH1A 2EKAA 2EHCA 2PCHA 1WYZA 2ELEA 3SZLA 2EHLA 3ZGLA 2EK7A 3UTCA 2E0NA 2EMUA 3FQ6A 4N7BA 4H4EA 2P6DA 2EJZA 2E8SA 3UTDA 2PCMA 2KYYA 3UV6A 3KELA 3NUTA 2DSIA 2DXXA 2P9DA 2CBFA 2ED5A 2E8QA 2Z6RA 2PB6A 2OWGA 2PCGA 2PCKA 1PJTA 3NDCA 3KE8A 2P5FA 4MV0A 1V9AA 2PCAA 2DV4A 3URKA 2P2XA 2E7RA 2EMRA 2EK3A 2EL3A 2EK2A 2E17A 2DV3A 3NEIA 2PCIA 2ZVCA 2EGLA 2E8RA 4MV5A 4EB3A 3KE9A 3UV7A 2YBOA 2E4NA 3DNFA 1PJSA 3T0FA 2EH4A 2E8HA 2E15A 1WDEA 2OWUA 3SZOA 2HR8A 2EJJA 2ED3A 2HUVA 2PB5A 2DV7A 3UWMA 3UV3A 2DXWA 3TIXB 1CBFA 3KEFA 3F7TA 3I4TA 1VHVA 2E08A 1S4DA 2EL2A 2P5CA 4MUYA 2QBUA 2EH5A 2DV5A 3ZGNA 2ENIA 2EJKA 1VA0A 2HUXA 3KEMA 3ND1A 2EGBA 2P6IA 1VCEA 2NPNA 1PJQA 2YBQA 2E0KA 1WNGA 4H4DA 1VE2A 5HW4A 2HUQA 2ELDA 2EEQA 2EL1A 2DXVA 3FFYA 2OWFA 2BB3A 2EGSA 2E07A 2HUTA 2E16A 2ZVBA 2E4RA 2OWKA 2DEKA 4H4CA 4E16A 4MUXA 2P6KA 2EH2A 2DSHA 3LMMA 2EK4A
chains in the Genus database with same CATH topology
2DSGA 3SZUA 3T0GA 2P6LA 2EN5A 3KWPA 2EL0A 2OWVA 2PB4A 3HH1A 2EKAA 2EHCA 2PCHA 1WYZA 2ELEA 3SZLA 2EHLA 3ZGLA 2EK7A 3UTCA 2E0NA 2EMUA 3FQ6A 4N7BA 4H4EA 2P6DA 2EJZA 2E8SA 3UTDA 2PCMA 2KYYA 3UV6A 3KELA 3NUTA 2DSIA 2DXXA 2P9DA 2CBFA 2ED5A 2E8QA 2Z6RA 2PB6A 2OWGA 2PCGA 2PCKA 1PJTA 3NDCA 3KE8A 2P5FA 4MV0A 1V9AA 2PCAA 2DV4A 3URKA 2P2XA 2E7RA 2EMRA 2EK3A 2EL3A 2EK2A 2E17A 2DV3A 3NEIA 2PCIA 2ZVCA 2EGLA 2E8RA 4MV5A 4EB3A 3KE9A 3UV7A 2YBOA 2E4NA 3DNFA 1PJSA 3T0FA 2EH4A 2E8HA 2E15A 1WDEA 2OWUA 3SZOA 2HR8A 2EJJA 2ED3A 2HUVA 2PB5A 2DV7A 3UWMA 3UV3A 2DXWA 3TIXB 1CBFA 3KEFA 3F7TA 3I4TA 1VHVA 2E08A 1S4DA 2EL2A 2P5CA 4MUYA 2QBUA 2EH5A 2DV5A 3ZGNA 2ENIA 2EJKA 1VA0A 2HUXA 3KEMA 3ND1A 2EGBA 2P6IA 1VCEA 2NPNA 1PJQA 2YBQA 2E0KA 1WNGA 4H4DA 1VE2A 5HW4A 2HUQA 2ELDA 2EEQA 2EL1A 2DXVA 3FFYA 2OWFA 2BB3A 2EGSA 2E07A 2HUTA 2E16A 2ZVBA 2E4RA 2OWKA 2DEKA 4H4CA 4E16A 4MUXA 2P6KA 2EH2A 2DSHA 3LMMA 2EK4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DSG A;  2P6L A;  2EN5 A;  3KWP A;  2EL0 A;  2OWV A;  2PB4 A;  3HH1 A;  2EKA A;  2EHC A;  2PCH A;  1WYZ A;  2ELE A;  2EHL A;  2EK7 A;  2E0N A;  2EMU A;  3FQ6 A;  2P6D A;  2EJZ A;  2E8S A;  2PCM A;  3NUT A;  2DSI A;  2DXX A;  2P9D A;  2CBF A;  2ED5 A;  2E8Q A;  2Z6R A;  2PB6 A;  2OWG A;  2PCG A;  2PCK A;  1PJT A;  3NDC A;  2P5F A;  1V9A A;  2PCA A;  2DV4 A;  2P2X A;  2E7R A;  2EMR A;  2EK3 A;  2EL3 A;  2EK2 A;  2E17 A;  2DV3 A;  3NEI A;  2PCI A;  2ZVC A;  2EGL A;  2E8R A;  2YBO A;  2E4N A;  1PJS A;  2EH4 A;  2E8H A;  2E15 A;  1WDE A;  2OWU A;  2HR8 A;  2EJJ A;  2ED3 A;  2HUV A;  2PB5 A;  2DV7 A;  2DXW A;  1CBF A;  3I4T A;  1VHV A;  2E08 A;  1S4D A;  2EL2 A;  2P5C A;  2QBU A;  2EH5 A;  2DV5 A;  2ENI A;  2EJK A;  1VA0 A;  2HUX A;  3ND1 A;  2EGB A;  2P6I A;  1VCE A;  2NPN A;  1PJQ A;  2YBQ A;  2E0K A;  1WNG A;  1VE2 A;  5HW4 A;  2HUQ A;  2ELD A;  2EEQ A;  2EL1 A;  2DXV A;  3FFY A;  2OWF A;  2BB3 A;  2EGS A;  2E07 A;  2HUT A;  2E16 A;  2ZVB A;  2E4R A;  2OWK A;  2DEK A;  4E16 A;  2P6K A;  2EH2 A;  2DSH A;  2EK4 A; 
#chains in the Genus database with same CATH topology
 2DSG A;  3SZU A;  3T0G A;  2P6L A;  2EN5 A;  3KWP A;  2EL0 A;  2OWV A;  2PB4 A;  3HH1 A;  2EKA A;  2EHC A;  2PCH A;  1WYZ A;  2ELE A;  3SZL A;  2EHL A;  3ZGL A;  2EK7 A;  3UTC A;  2E0N A;  2EMU A;  3FQ6 A;  4N7B A;  4H4E A;  2P6D A;  2EJZ A;  2E8S A;  3UTD A;  2PCM A;  2KYY A;  3UV6 A;  3KEL A;  3NUT A;  2DSI A;  2DXX A;  2P9D A;  2CBF A;  2ED5 A;  2E8Q A;  2Z6R A;  2PB6 A;  2OWG A;  2PCG A;  2PCK A;  1PJT A;  3NDC A;  3KE8 A;  2P5F A;  4MV0 A;  1V9A A;  2PCA A;  2DV4 A;  3URK A;  2P2X A;  2E7R A;  2EMR A;  2EK3 A;  2EL3 A;  2EK2 A;  2E17 A;  2DV3 A;  3NEI A;  2PCI A;  2ZVC A;  2EGL A;  2E8R A;  4MV5 A;  4EB3 A;  3KE9 A;  3UV7 A;  2YBO A;  2E4N A;  3DNF A;  1PJS A;  3T0F A;  2EH4 A;  2E8H A;  2E15 A;  1WDE A;  2OWU A;  3SZO A;  2HR8 A;  2EJJ A;  2ED3 A;  2HUV A;  2PB5 A;  2DV7 A;  3UWM A;  3UV3 A;  2DXW A;  3TIX B;  1CBF A;  3KEF A;  3F7T A;  3I4T A;  1VHV A;  2E08 A;  1S4D A;  2EL2 A;  2P5C A;  4MUY A;  2QBU A;  2EH5 A;  2DV5 A;  3ZGN A;  2ENI A;  2EJK A;  1VA0 A;  2HUX A;  3KEM A;  3ND1 A;  2EGB A;  2P6I A;  1VCE A;  2NPN A;  1PJQ A;  2YBQ A;  2E0K A;  1WNG A;  4H4D A;  1VE2 A;  5HW4 A;  2HUQ A;  2ELD A;  2EEQ A;  2EL1 A;  2DXV A;  3FFY A;  2OWF A;  2BB3 A;  2EGS A;  2E07 A;  2HUT A;  2E16 A;  2ZVB A;  2E4R A;  2OWK A;  2DEK A;  4H4C A;  4E16 A;  4MUX A;  2P6K A;  2EH2 A;  2DSH A;  3LMM A;  2EK4 A; 
#chains in the Genus database with same CATH homology
 2DSG A;  3SZU A;  3T0G A;  2P6L A;  2EN5 A;  3KWP A;  2EL0 A;  2OWV A;  2PB4 A;  3HH1 A;  2EKA A;  2EHC A;  2PCH A;  1WYZ A;  2ELE A;  3SZL A;  2EHL A;  3ZGL A;  2EK7 A;  3UTC A;  2E0N A;  2EMU A;  3FQ6 A;  4N7B A;  4H4E A;  2P6D A;  2EJZ A;  2E8S A;  3UTD A;  2PCM A;  2KYY A;  3UV6 A;  3KEL A;  3NUT A;  2DSI A;  2DXX A;  2P9D A;  2CBF A;  2ED5 A;  2E8Q A;  2Z6R A;  2PB6 A;  2OWG A;  2PCG A;  2PCK A;  1PJT A;  3NDC A;  3KE8 A;  2P5F A;  4MV0 A;  1V9A A;  2PCA A;  2DV4 A;  3URK A;  2P2X A;  2E7R A;  2EMR A;  2EK3 A;  2EL3 A;  2EK2 A;  2E17 A;  2DV3 A;  3NEI A;  2PCI A;  2ZVC A;  2EGL A;  2E8R A;  4MV5 A;  4EB3 A;  3KE9 A;  3UV7 A;  2YBO A;  2E4N A;  3DNF A;  1PJS A;  3T0F A;  2EH4 A;  2E8H A;  2E15 A;  1WDE A;  2OWU A;  3SZO A;  2HR8 A;  2EJJ A;  2ED3 A;  2HUV A;  2PB5 A;  2DV7 A;  3UWM A;  3UV3 A;  2DXW A;  3TIX B;  1CBF A;  3KEF A;  3F7T A;  3I4T A;  1VHV A;  2E08 A;  1S4D A;  2EL2 A;  2P5C A;  4MUY A;  2QBU A;  2EH5 A;  2DV5 A;  3ZGN A;  2ENI A;  2EJK A;  1VA0 A;  2HUX A;  3KEM A;  3ND1 A;  2EGB A;  2P6I A;  1VCE A;  2NPN A;  1PJQ A;  2YBQ A;  2E0K A;  1WNG A;  4H4D A;  1VE2 A;  5HW4 A;  2HUQ A;  2ELD A;  2EEQ A;  2EL1 A;  2DXV A;  3FFY A;  2OWF A;  2BB3 A;  2EGS A;  2E07 A;  2HUT A;  2E16 A;  2ZVB A;  2E4R A;  2OWK A;  2DEK A;  4H4C A;  4E16 A;  4MUX A;  2P6K A;  2EH2 A;  2DSH A;  3LMM A;  2EK4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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