1WDVA

Crystal structure of hypothetical protein ape2540
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
150
structure length
150
Chain Sequence
EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAGKPVRLARANEVVELTGYPVGGVPPVALPPNIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATGAVVADVSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein APE2540
publication title Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
pubmed doi rcsb
source organism Aeropyrum pernix
total genus 39
structure length 150
sequence length 150
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04073 tRNA_edit Aminoacyl-tRNA editing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.960.10 Alpha Beta Alpha-Beta Complex YbaK protein YbaK/aminoacyl-tRNA synthetase-associated domain 1wdvA00
1DBUA 2Z0KA 2Z0XA 2DXAA 3RI0A 1VJFA 1VKIA 3RIJA 3OP6A 2J3LA 3MEMA 2J3MA 2CX5A 1WDVA 1DBXA
chains in the Genus database with same CATH superfamily
1DBUA 2Z0KA 2Z0XA 2DXAA 3RI0A 1VJFA 1VKIA 3RIJA 3OP6A 2J3LA 3MEMA 2J3MA 2CX5A 1WDVA 1DBXA
chains in the Genus database with same CATH topology
1DBUA 2Z0KA 2Z0XA 2DXAA 3RI0A 1VJFA 1VKIA 3RIJA 3OP6A 2J3LA 3MEMA 2J3MA 2CX5A 1WDVA 1DBXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DBU A;  2Z0K A;  2Z0X A;  2DXA A;  3RI0 A;  1VJF A;  1VKI A;  3RIJ A;  3OP6 A;  2J3L A;  3MEM A;  2J3M A;  2CX5 A;  1WDV A;  1DBX A; 
#chains in the Genus database with same CATH topology
 1DBU A;  2Z0K A;  2Z0X A;  2DXA A;  3RI0 A;  1VJF A;  1VKI A;  3RIJ A;  3OP6 A;  2J3L A;  3MEM A;  2J3M A;  2CX5 A;  1WDV A;  1DBX A; 
#chains in the Genus database with same CATH homology
 1DBU A;  2Z0K A;  2Z0X A;  2DXA A;  3RI0 A;  1VJF A;  1VKI A;  3RIJ A;  3OP6 A;  2J3L A;  3MEM A;  2J3M A;  2CX5 A;  1WDV A;  1DBX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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