1WFSA

Solution structure of glia maturation factor-gamma from mus musculus
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
151
structure length
151
Chain Sequence
GSSGSSGSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTETWLKEKLASGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Glia maturation factor gamma
publication title NMR solution structures of actin depolymerizing factor homology domains.
pubmed doi rcsb
source organism Mus musculus
total genus 22
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2004-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1wfsA00
1D0NA 3FFKA 1TMWA 1WM4A 4BEX1 4PKIG 5KYWA 2FF3A 1CFYA 1D4XG 4S10C 2XF1A 2FH1A 1X67A 1EQYS 1HQZ1 2NUTA 3EG9A 1M4JA 1SVRA 3EGDB 1P8XA 3CJBG 1YVNG 2I2QA 2KVKA 1J72A 2FGHA 2MV2A 1T44G 3Q2BA 4KEEA 1AK6A 1T3XA 5KYUA 4KEDA 1CNUA 1Q8GA 1H1VG 3FG6A 3DAWB 1QPVA 2NUTB 1KCQA 1AK7A 3EH2A 1PD0A 1VFQA 1PD1A 2VIKA 1V6FA 1NM1G 1NMDG 5FAFA 4CBUG 1NLVG 5KYXA 4Z94G 1ESVS 2W0IA 1M2VA 3FFNA 5KYUB 1SVQA 1P8ZG 2VACA 5HVKB 2VILA 3EGXA 5FAEA 5HVKD 1AHQA 5KYWB 2FH2A 1TVJA 2XFAA 2L72A 4LIZA 1WNJA 3L50A 1YAGG 3A5LS 4KEFA 1VKKA 2FF6G 4CBXG 5IVUA 1DEJS 2MP4A 3EG9B 1T3YA 2D8BA 2LLFA 1M2OA 4PKHB 1WFSA 5KYXB 2LJ8A 1C0GS 2FH4A 5KYYA 1M2VB 2NUPA 3EFOA 2QTVA 3EGXB 3TU5B 3CIPG 3EH1A 1T2LA 4JD2H 1UDMA 1PCXA 1RGIG 1Q8XA 1JHWA 3A5NS 3A5MS 1C0FS 5KYNA 1F7SA 3FG7A 3A5OS 3CI5G 2LXXA 1NPHA 5L6WC 1COFA 2HD7A 1SVYA 4PKGG 3EGDA 5DD2A 2MOTA 2FH3A 4CBWG 5KYYB 2NUPB 1MDUA 3CJCG 5A1MA 3EFOB
chains in the Genus database with same CATH superfamily
1D0NA 3FFKA 1TMWA 1WM4A 4BEX1 4PKIG 5KYWA 2FF3A 1CFYA 1D4XG 4S10C 2XF1A 2FH1A 1X67A 1EQYS 3DA7A 1HQZ1 2NUTA 3EG9A 1M4JA 1SVRA 3EGDB 1P8XA 3CJBG 1YVNG 2I2QA 2KVKA 1J72A 2FGHA 2MV2A 1T44G 3Q2BA 4KEEA 1AK6A 1T3XA 5KYUA 4KEDA 1CNUA 1Q8GA 1H1VG 3FG6A 3DAWB 1QPVA 2NUTB 1KCQA 1AK7A 3EH2A 1PD0A 1VFQA 1PD1A 2VIKA 1V6FA 1NM1G 1NMDG 5FAFA 4CBUG 1NLVG 5KYXA 4Z94G 1ESVS 2W0IA 1M2VA 3FFNA 5KYUB 1SVQA 1P8ZG 2VACA 5HVKB 2VILA 3EGXA 5FAEA 5HVKD 1AHQA 5KYWB 2FH2A 1TVJA 2XFAA 2L72A 4LIZA 1WNJA 3L50A 1YAGG 3A5LS 4KEFA 1VKKA 2FF6G 4CBXG 5IVUA 1DEJS 2MP4A 3EG9B 1T3YA 2D8BA 2LLFA 1M2OA 4PKHB 1WFSA 5KYXB 2LJ8A 1C0GS 2FH4A 5KYYA 1M2VB 2NUPA 3EFOA 2QTVA 3EGXB 3TU5B 3CIPG 3EH1A 1T2LA 4JD2H 1UDMA 1PCXA 1RGIG 1Q8XA 1JHWA 3A5NS 3A5MS 1C0FS 5KYNA 1F7SA 3FG7A 3A5OS 3CI5G 2LXXA 1NPHA 5L6WC 1COFA 2HD7A 1SVYA 4PKGG 3EGDA 5DD2A 2MOTA 2FH3A 4CBWG 5KYYB 2NUPB 1MDUA 3CJCG 5A1MA 3EFOB
chains in the Genus database with same CATH topology
1D0NA 3FFKA 1TMWA 1WM4A 4BEX1 4PKIG 5KYWA 2FF3A 1CFYA 1D4XG 4S10C 2XF1A 2FH1A 1X67A 1EQYS 3DA7A 1HQZ1 2NUTA 3EG9A 1M4JA 1SVRA 3EGDB 1P8XA 3CJBG 1YVNG 2I2QA 2KVKA 1J72A 2FGHA 2MV2A 1T44G 3Q2BA 4KEEA 1AK6A 1T3XA 5KYUA 4KEDA 1CNUA 1Q8GA 1H1VG 3FG6A 3DAWB 1QPVA 2NUTB 1KCQA 1AK7A 3EH2A 1PD0A 1VFQA 1PD1A 2VIKA 1V6FA 1NM1G 1NMDG 5FAFA 4CBUG 1NLVG 5KYXA 4Z94G 1ESVS 2W0IA 1M2VA 3FFNA 5KYUB 1SVQA 1P8ZG 2VACA 5HVKB 2VILA 3EGXA 5FAEA 5HVKD 1AHQA 5KYWB 2FH2A 1TVJA 2XFAA 2L72A 4LIZA 1WNJA 3L50A 1YAGG 3A5LS 4KEFA 1VKKA 2FF6G 4CBXG 5IVUA 1DEJS 2MP4A 3EG9B 1T3YA 2D8BA 2LLFA 1M2OA 4PKHB 1WFSA 5KYXB 2LJ8A 1C0GS 2FH4A 5KYYA 1M2VB 2NUPA 3EFOA 2QTVA 3EGXB 3TU5B 3CIPG 3EH1A 1T2LA 4JD2H 1UDMA 1PCXA 1RGIG 1Q8XA 1JHWA 3A5NS 3A5MS 1C0FS 5KYNA 1F7SA 3FG7A 3A5OS 3CI5G 2LXXA 1NPHA 5L6WC 1COFA 2HD7A 1SVYA 4PKGG 3EGDA 5DD2A 2MOTA 2FH3A 4CBWG 5KYYB 2NUPB 1MDUA 3CJCG 5A1MA 3EFOB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D0N A;  3FFK A;  1TMW A;  1WM4 A;  4BEX 1;  4PKI G;  5KYW A;  2FF3 A;  1CFY A;  1D4X G;  4S10 C;  2XF1 A;  2FH1 A;  1X67 A;  1EQY S;  1HQZ 1;  2NUT A;  3EG9 A;  1M4J A;  1SVR A;  3EGD B;  1P8X A;  3CJB G;  1YVN G;  2I2Q A;  2KVK A;  1J72 A;  2FGH A;  2MV2 A;  1T44 G;  3Q2B A;  4KEE A;  1AK6 A;  1T3X A;  5KYU A;  4KED A;  1CNU A;  1Q8G A;  1H1V G;  3FG6 A;  3DAW B;  1QPV A;  2NUT B;  1KCQ A;  1AK7 A;  3EH2 A;  1PD0 A;  1VFQ A;  1PD1 A;  2VIK A;  1V6F A;  1NM1 G;  1NMD G;  5FAF A;  4CBU G;  1NLV G;  5KYX A;  4Z94 G;  1ESV S;  2W0I A;  1M2V A;  3FFN A;  5KYU B;  1SVQ A;  1P8Z G;  2VAC A;  5HVK B;  2VIL A;  3EGX A;  5FAE A;  5HVK D;  1AHQ A;  5KYW B;  2FH2 A;  1TVJ A;  2XFA A;  2L72 A;  4LIZ A;  1WNJ A;  3L50 A;  1YAG G;  3A5L S;  4KEF A;  1VKK A;  2FF6 G;  4CBX G;  5IVU A;  1DEJ S;  2MP4 A;  3EG9 B;  1T3Y A;  2D8B A;  2LLF A;  1M2O A;  4PKH B;  1WFS A;  5KYX B;  2LJ8 A;  1C0G S;  2FH4 A;  5KYY A;  1M2V B;  2NUP A;  3EFO A;  2QTV A;  3EGX B;  3TU5 B;  3CIP G;  3EH1 A;  1T2L A;  4JD2 H;  1UDM A;  1PCX A;  1RGI G;  1Q8X A;  1JHW A;  3A5N S;  3A5M S;  1C0F S;  5KYN A;  1F7S A;  3FG7 A;  3A5O S;  3CI5 G;  2LXX A;  1NPH A;  5L6W C;  1COF A;  2HD7 A;  1SVY A;  4PKG G;  3EGD A;  5DD2 A;  2MOT A;  2FH3 A;  4CBW G;  5KYY B;  2NUP B;  1MDU A;  3CJC G;  5A1M A;  3EFO B; 
#chains in the Genus database with same CATH topology
 1D0N A;  3FFK A;  1TMW A;  1WM4 A;  4BEX 1;  4PKI G;  5KYW A;  2FF3 A;  1CFY A;  1D4X G;  4S10 C;  2XF1 A;  2FH1 A;  1X67 A;  1EQY S;  3DA7 A;  1HQZ 1;  2NUT A;  3EG9 A;  1M4J A;  1SVR A;  3EGD B;  1P8X A;  3CJB G;  1YVN G;  2I2Q A;  2KVK A;  1J72 A;  2FGH A;  2MV2 A;  1T44 G;  3Q2B A;  4KEE A;  1AK6 A;  1T3X A;  5KYU A;  4KED A;  1CNU A;  1Q8G A;  1H1V G;  3FG6 A;  3DAW B;  1QPV A;  2NUT B;  1KCQ A;  1AK7 A;  3EH2 A;  1PD0 A;  1VFQ A;  1PD1 A;  2VIK A;  1V6F A;  1NM1 G;  1NMD G;  5FAF A;  4CBU G;  1NLV G;  5KYX A;  4Z94 G;  1ESV S;  2W0I A;  1M2V A;  3FFN A;  5KYU B;  1SVQ A;  1P8Z G;  2VAC A;  5HVK B;  2VIL A;  3EGX A;  5FAE A;  5HVK D;  1AHQ A;  5KYW B;  2FH2 A;  1TVJ A;  2XFA A;  2L72 A;  4LIZ A;  1WNJ A;  3L50 A;  1YAG G;  3A5L S;  4KEF A;  1VKK A;  2FF6 G;  4CBX G;  5IVU A;  1DEJ S;  2MP4 A;  3EG9 B;  1T3Y A;  2D8B A;  2LLF A;  1M2O A;  4PKH B;  1WFS A;  5KYX B;  2LJ8 A;  1C0G S;  2FH4 A;  5KYY A;  1M2V B;  2NUP A;  3EFO A;  2QTV A;  3EGX B;  3TU5 B;  3CIP G;  3EH1 A;  1T2L A;  4JD2 H;  1UDM A;  1PCX A;  1RGI G;  1Q8X A;  1JHW A;  3A5N S;  3A5M S;  1C0F S;  5KYN A;  1F7S A;  3FG7 A;  3A5O S;  3CI5 G;  2LXX A;  1NPH A;  5L6W C;  1COF A;  2HD7 A;  1SVY A;  4PKG G;  3EGD A;  5DD2 A;  2MOT A;  2FH3 A;  4CBW G;  5KYY B;  2NUP B;  1MDU A;  3CJC G;  5A1M A;  3EFO B; 
#chains in the Genus database with same CATH homology
 1D0N A;  3FFK A;  1TMW A;  1WM4 A;  4BEX 1;  4PKI G;  5KYW A;  2FF3 A;  1CFY A;  1D4X G;  4S10 C;  2XF1 A;  2FH1 A;  1X67 A;  1EQY S;  3DA7 A;  1HQZ 1;  2NUT A;  3EG9 A;  1M4J A;  1SVR A;  3EGD B;  1P8X A;  3CJB G;  1YVN G;  2I2Q A;  2KVK A;  1J72 A;  2FGH A;  2MV2 A;  1T44 G;  3Q2B A;  4KEE A;  1AK6 A;  1T3X A;  5KYU A;  4KED A;  1CNU A;  1Q8G A;  1H1V G;  3FG6 A;  3DAW B;  1QPV A;  2NUT B;  1KCQ A;  1AK7 A;  3EH2 A;  1PD0 A;  1VFQ A;  1PD1 A;  2VIK A;  1V6F A;  1NM1 G;  1NMD G;  5FAF A;  4CBU G;  1NLV G;  5KYX A;  4Z94 G;  1ESV S;  2W0I A;  1M2V A;  3FFN A;  5KYU B;  1SVQ A;  1P8Z G;  2VAC A;  5HVK B;  2VIL A;  3EGX A;  5FAE A;  5HVK D;  1AHQ A;  5KYW B;  2FH2 A;  1TVJ A;  2XFA A;  2L72 A;  4LIZ A;  1WNJ A;  3L50 A;  1YAG G;  3A5L S;  4KEF A;  1VKK A;  2FF6 G;  4CBX G;  5IVU A;  1DEJ S;  2MP4 A;  3EG9 B;  1T3Y A;  2D8B A;  2LLF A;  1M2O A;  4PKH B;  1WFS A;  5KYX B;  2LJ8 A;  1C0G S;  2FH4 A;  5KYY A;  1M2V B;  2NUP A;  3EFO A;  2QTV A;  3EGX B;  3TU5 B;  3CIP G;  3EH1 A;  1T2L A;  4JD2 H;  1UDM A;  1PCX A;  1RGI G;  1Q8X A;  1JHW A;  3A5N S;  3A5M S;  1C0F S;  5KYN A;  1F7S A;  3FG7 A;  3A5O S;  3CI5 G;  2LXX A;  1NPH A;  5L6W C;  1COF A;  2HD7 A;  1SVY A;  4PKG G;  3EGD A;  5DD2 A;  2MOT A;  2FH3 A;  4CBW G;  5KYY B;  2NUP B;  1MDU A;  3CJC G;  5A1M A;  3EFO B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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