1WHZA

Crystal structure of a hypothetical protein from thermus thermophilus hb8
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
70
structure length
70
Chain Sequence
MWMPPRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRIVVVPFHSGELPKGTFKRILRDAGLTEEEFHNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein
publication title Crystal structure of a hypothetical protein from thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 21
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07927 HicA_toxin HicA toxin of bacterial toxin-antitoxin,
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.30 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Hypothetical protein. 1whzA00
4P78C 4C26A 1WHZA
chains in the Genus database with same CATH superfamily
3T3TA 3GD0A 3SSEA 2P1XA 3IAS7 4JPDA 1EW4A 1EKGA 3T3LA 3SSDA 4LK8A 3T3KA 2EFFA 3S5FA 4P78C 1LY7A 3S4MA 1WHZA 4EC2A 3GD9A 2FQLA 3S5EA 1D2MA 1SOYA 2GA5A 3OEQA 4C26A 3A5PA 3SSCA 4HEA7 4HS5A 4LP1A 3S5DA 3T3JA 3IMOA 3IAM7 3T3XA 2FUG7 3OERA 1V5RA 3I9V7
chains in the Genus database with same CATH topology
2KKUA 3IUWA 2DP9A 1S04A 4P78C 1XNEA 2Z0TA 1TE7A 4C26A 2E5OA 1WK2A 1WHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P78 C;  4C26 A;  1WHZ A; 
#chains in the Genus database with same CATH topology
 3T3T A;  3GD0 A;  3SSE A;  2P1X A;  3IAS 7;  4JPD A;  1EW4 A;  1EKG A;  3T3L A;  3SSD A;  4LK8 A;  3T3K A;  2EFF A;  3S5F A;  4P78 C;  1LY7 A;  3S4M A;  1WHZ A;  4EC2 A;  3GD9 A;  2FQL A;  3S5E A;  1D2M A;  1SOY A;  2GA5 A;  3OEQ A;  4C26 A;  3A5P A;  3SSC A;  4HEA 7;  4HS5 A;  4LP1 A;  3S5D A;  3T3J A;  3IMO A;  3IAM 7;  3T3X A;  2FUG 7;  3OER A;  1V5R A;  3I9V 7; 
#chains in the Genus database with same CATH homology
 2KKU A;  3IUW A;  2DP9 A;  1S04 A;  4P78 C;  1XNE A;  2Z0T A;  1TE7 A;  4C26 A;  2E5O A;  1WK2 A;  1WHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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