1WIBA

Solution structure of the n-terminal domain from mouse hypothetical protein bab22488
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
92
structure length
92
Chain Sequence
GSSGSSGPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the N-terminal domain from mouse hypothetical protein BAB22488
rcsb
molecule tags Ribosome
source organism Mus musculus
molecule keywords 60S ribosomal protein L12
total genus 6
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1550.10 Alpha Beta 2-Layer Sandwich Ribosomal protein L11, N-terminal domain Ribosomal protein L11/L12, N-terminal domain 1wibA00
4V19K 5DM7F 5GAHJ 3J7ZI 2ZJPF 3EGVB 2E35A 2NXNB 1MMSA 3CJRB 2ZJQF 3J7YJ 3CF5F 1WIBA 5DM6F 2E36A 5GAGJ 2JQ7A 2K3FA 2H8WA 4UY8I 5GADJ 2E34A 3CJQB 3CJTB 3CJSB
chains in the Genus database with same CATH superfamily
4V19K 5DM7F 5GAHJ 3J7ZI 2ZJPF 3EGVB 2E35A 2NXNB 1MMSA 3CJRB 2ZJQF 3J7YJ 3CF5F 1WIBA 5DM6F 2E36A 5GAGJ 2JQ7A 2K3FA 2H8WA 4UY8I 5GADJ 2E34A 3CJQB 3CJTB 3CJSB
chains in the Genus database with same CATH topology
4V19K 5DM7F 5GAHJ 3J7ZI 2ZJPF 3EGVB 2E35A 2NXNB 1MMSA 3CJRB 2ZJQF 3J7YJ 3CF5F 1WIBA 5DM6F 2E36A 5GAGJ 2JQ7A 2K3FA 2H8WA 4UY8I 5GADJ 2E34A 3CJQB 3CJTB 3CJSB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V19 K;  5DM7 F;  5GAH J;  3J7Z I;  2ZJP F;  3EGV B;  2E35 A;  2NXN B;  1MMS A;  3CJR B;  2ZJQ F;  3J7Y J;  3CF5 F;  1WIB A;  5DM6 F;  2E36 A;  5GAG J;  2JQ7 A;  2K3F A;  2H8W A;  4UY8 I;  5GAD J;  2E34 A;  3CJQ B;  3CJT B;  3CJS B; 
#chains in the Genus database with same CATH topology
 4V19 K;  5DM7 F;  5GAH J;  3J7Z I;  2ZJP F;  3EGV B;  2E35 A;  2NXN B;  1MMS A;  3CJR B;  2ZJQ F;  3J7Y J;  3CF5 F;  1WIB A;  5DM6 F;  2E36 A;  5GAG J;  2JQ7 A;  2K3F A;  2H8W A;  4UY8 I;  5GAD J;  2E34 A;  3CJQ B;  3CJT B;  3CJS B; 
#chains in the Genus database with same CATH homology
 4V19 K;  5DM7 F;  5GAH J;  3J7Z I;  2ZJP F;  3EGV B;  2E35 A;  2NXN B;  1MMS A;  3CJR B;  2ZJQ F;  3J7Y J;  3CF5 F;  1WIB A;  5DM6 F;  2E36 A;  5GAG J;  2JQ7 A;  2K3F A;  2H8W A;  4UY8 I;  5GAD J;  2E34 A;  3CJQ B;  3CJT B;  3CJS B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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