1WIXA

The solution structure of rsgi ruh-026, conserved domain of hook1 protein from mouse
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
164
structure length
164
Chain Sequence
GSSGSSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hook homolog 1
publication title The solution structure of RSGI RUH-026, conserved domain of HOOK1 protein from mouse
rcsb
source organism Mus musculus
total genus 41
structure length 164
sequence length 164
ec nomenclature
pdb deposition date 2004-05-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wixA01
2K3SA 2QJZA 1WYPA 2WA7A 4B7LA 2R8UA 3JALM 3HOCA 1AA2A 2DK9A 5J8EA 2VZDA 1SH5A 4EDNA 1WIXA 2D85A 1DXXA 1WKUA 1PA7A 5L0OA 2D88A 2D89A 2WA6A 4Q59A 2WFNA 3HOPA 5A4BA 2K2RA 4TXKA 1P5SA 2VZCA 3KY9A 1UEGA 3FERA 1BKRA 4Q58A 1QAGA 2RR8A 1WYLA 1BHDA 1WJOA 1WYMA 3REPB 2QJXA 5A38A 3KMUB 2EYNA 1SH6A 3F7PA 1H67A 3CO1A 2L3GA 1VKAA 1WYOA 4EDMA 2R0OA 2VZGB 4Q57B 2D87A 2YRNA 2D86A 4EDLA 2E9KA 1PXYA 3I6XA 3JARM 2VZIB 4TXIA 1RT8A 5BVRA 1AOAA 2EE7A 1UJOA 1V5KA 3KMWB 5A37A 1P2XA 2WA5A 1WYQA 5A36A 2JV9A 1WYRA 3HORA 1WYNA 3JAKM 1TJTA 2EYIA 1MB8A
chains in the Genus database with same CATH superfamily
2K3SA 2QJZA 1WYPA 2WA7A 4B7LA 2R8UA 3JALM 3HOCA 1AA2A 2DK9A 5J8EA 2VZDA 1SH5A 4EDNA 1WIXA 2D85A 4LVRA 1DXXA 1WKUA 1PA7A 5L0OA 2D88A 2EQOA 2D89A 2WA6A 4Q59A 2WFNA 3HOPA 5A4BA 2K2RA 4TXKA 1P5SA 2VZCA 3KY9A 1UEGA 3FERA 2WDTA 1BKRA 4Q58A 1QAGA 2RR8A 1WYLA 1BHDA 2VE7C 1WJOA 1WYMA 3REPB 2QJXA 5A38A 2HL9A 3KMUB 2EYNA 1SH6A 2VE7A 3F7PA 1H67A 3CO1A 2L3GA 1VKAA 1WYOA 3VP7A 4EDMA 2R0OA 2VZGB 4Q57B 4DDPA 2D87A 5FMUA 2YRNA 2D86A 4EDLA 2E9KA 1PXYA 3I6XA 3JARM 2WE6A 2VZIB 4TXIA 1RT8A 5BVRA 2HL8A 1AOAA 2EE7A 1UJOA 1V5KA 2IGPA 3KMWB 1EUVA 5A37A 5FMTA 1P2XA 2WA5A 2HKPA 4LVPA 1WYQA 5A36A 2JV9A 1WYRA 3HORA 1WYNA 3EAYA 3JAKM 1TJTA 2EYIA 1MB8A
chains in the Genus database with same CATH topology
2K3SA 2QJZA 1WYPA 2WA7A 4B7LA 2R8UA 3JALM 3HOCA 1AA2A 2DK9A 5J8EA 2VZDA 1SH5A 4EDNA 1WIXA 2D85A 1DXXA 1WKUA 1PA7A 5L0OA 2D88A 2D89A 2WA6A 4Q59A 2WFNA 3HOPA 5A4BA 2K2RA 4TXKA 1P5SA 2VZCA 3KY9A 1UEGA 3FERA 1BKRA 4Q58A 1QAGA 2RR8A 1WYLA 1BHDA 1WJOA 1WYMA 3REPB 2QJXA 5A38A 3KMUB 2EYNA 1SH6A 3F7PA 1H67A 3CO1A 2L3GA 1VKAA 1WYOA 4EDMA 2R0OA 2VZGB 4Q57B 2D87A 2YRNA 2D86A 4EDLA 2E9KA 1PXYA 3I6XA 3JARM 2VZIB 4TXIA 1RT8A 5BVRA 1AOAA 2EE7A 1UJOA 1V5KA 3KMWB 5A37A 1P2XA 2WA5A 1WYQA 5A36A 2JV9A 1WYRA 3HORA 1WYNA 3JAKM 1TJTA 2EYIA 1MB8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3S A;  2QJZ A;  1WYP A;  2WA7 A;  4B7L A;  2R8U A;  3JAL M;  3HOC A;  1AA2 A;  2DK9 A;  5J8E A;  2VZD A;  1SH5 A;  4EDN A;  1WIX A;  2D85 A;  1DXX A;  1WKU A;  1PA7 A;  5L0O A;  2D88 A;  2D89 A;  2WA6 A;  4Q59 A;  2WFN A;  3HOP A;  5A4B A;  2K2R A;  4TXK A;  1P5S A;  2VZC A;  3KY9 A;  1UEG A;  3FER A;  1BKR A;  4Q58 A;  1QAG A;  2RR8 A;  1WYL A;  1BHD A;  1WJO A;  1WYM A;  3REP B;  2QJX A;  5A38 A;  3KMU B;  2EYN A;  1SH6 A;  3F7P A;  1H67 A;  3CO1 A;  2L3G A;  1VKA A;  1WYO A;  4EDM A;  2R0O A;  2VZG B;  4Q57 B;  2D87 A;  2YRN A;  2D86 A;  4EDL A;  2E9K A;  1PXY A;  3I6X A;  3JAR M;  2VZI B;  4TXI A;  1RT8 A;  5BVR A;  1AOA A;  2EE7 A;  1UJO A;  1V5K A;  3KMW B;  5A37 A;  1P2X A;  2WA5 A;  1WYQ A;  5A36 A;  2JV9 A;  1WYR A;  3HOR A;  1WYN A;  3JAK M;  1TJT A;  2EYI A;  1MB8 A; 
#chains in the Genus database with same CATH topology
 2K3S A;  2QJZ A;  1WYP A;  2WA7 A;  4B7L A;  2R8U A;  3JAL M;  3HOC A;  1AA2 A;  2DK9 A;  5J8E A;  2VZD A;  1SH5 A;  4EDN A;  1WIX A;  2D85 A;  4LVR A;  1DXX A;  1WKU A;  1PA7 A;  5L0O A;  2D88 A;  2EQO A;  2D89 A;  2WA6 A;  4Q59 A;  2WFN A;  3HOP A;  5A4B A;  2K2R A;  4TXK A;  1P5S A;  2VZC A;  3KY9 A;  1UEG A;  3FER A;  2WDT A;  1BKR A;  4Q58 A;  1QAG A;  2RR8 A;  1WYL A;  1BHD A;  2VE7 C;  1WJO A;  1WYM A;  3REP B;  2QJX A;  5A38 A;  2HL9 A;  3KMU B;  2EYN A;  1SH6 A;  2VE7 A;  3F7P A;  1H67 A;  3CO1 A;  2L3G A;  1VKA A;  1WYO A;  3VP7 A;  4EDM A;  2R0O A;  2VZG B;  4Q57 B;  4DDP A;  2D87 A;  5FMU A;  2YRN A;  2D86 A;  4EDL A;  2E9K A;  1PXY A;  3I6X A;  3JAR M;  2WE6 A;  2VZI B;  4TXI A;  1RT8 A;  5BVR A;  2HL8 A;  1AOA A;  2EE7 A;  1UJO A;  1V5K A;  2IGP A;  3KMW B;  1EUV A;  5A37 A;  5FMT A;  1P2X A;  2WA5 A;  2HKP A;  4LVP A;  1WYQ A;  5A36 A;  2JV9 A;  1WYR A;  3HOR A;  1WYN A;  3EAY A;  3JAK M;  1TJT A;  2EYI A;  1MB8 A; 
#chains in the Genus database with same CATH homology
 2K3S A;  2QJZ A;  1WYP A;  2WA7 A;  4B7L A;  2R8U A;  3JAL M;  3HOC A;  1AA2 A;  2DK9 A;  5J8E A;  2VZD A;  1SH5 A;  4EDN A;  1WIX A;  2D85 A;  1DXX A;  1WKU A;  1PA7 A;  5L0O A;  2D88 A;  2D89 A;  2WA6 A;  4Q59 A;  2WFN A;  3HOP A;  5A4B A;  2K2R A;  4TXK A;  1P5S A;  2VZC A;  3KY9 A;  1UEG A;  3FER A;  1BKR A;  4Q58 A;  1QAG A;  2RR8 A;  1WYL A;  1BHD A;  1WJO A;  1WYM A;  3REP B;  2QJX A;  5A38 A;  3KMU B;  2EYN A;  1SH6 A;  3F7P A;  1H67 A;  3CO1 A;  2L3G A;  1VKA A;  1WYO A;  4EDM A;  2R0O A;  2VZG B;  4Q57 B;  2D87 A;  2YRN A;  2D86 A;  4EDL A;  2E9K A;  1PXY A;  3I6X A;  3JAR M;  2VZI B;  4TXI A;  1RT8 A;  5BVR A;  1AOA A;  2EE7 A;  1UJO A;  1V5K A;  3KMW B;  5A37 A;  1P2X A;  2WA5 A;  1WYQ A;  5A36 A;  2JV9 A;  1WYR A;  3HOR A;  1WYN A;  3JAK M;  1TJT A;  2EYI A;  1MB8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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