1WK8A

Isoleucyl-trna synthetase editing domain complexed with the pre-transfer editing substrate analogue, val-ams
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
182
structure length
182
Chain Sequence
QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLFKEESY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Isoleucyl-tRNA synthetase
publication title Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
pubmed doi rcsb
source organism Thermus thermophilus
total genus 54
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature ec 6.1.1.5: Isoleucine--tRNA ligase.
pdb deposition date 2004-05-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 1wk8A00
4AQ7A 1OBCA 4AS1A 1OBHA 5AGSA 1WNYA 1QU2A 4ARCA 1WZ2A 1WKAA 4ARIA 2AJHA 4K47A 3PZ6A 1JZSA 2BTEA 2WFDA 1QU3A 1IVSA 1GAXA 3ZJUA 1UDZA 1WK9A 1WNZA 2WFEA 5AGHA 5AGJA 2V0CA 1WK8A 5AGIA 1ILEA 5AGTA 2V0GA 2WFGA 3ZJVA 4CQNA 1WKBA 2BYTA 5AGRA 2AJGA 3PZ5A 3O0AA 3ZGZA 1FFYA 3ZJTA 3PZ0A 1JZQA 4K48A 2AJIA 1UE0A 1H3NA
chains in the Genus database with same CATH superfamily
4AQ7A 1OBCA 4AS1A 1OBHA 5AGSA 1WNYA 1QU2A 4ARCA 1WZ2A 1WKAA 4ARIA 2AJHA 4K47A 3PZ6A 1JZSA 2BTEA 2WFDA 1QU3A 1IVSA 1GAXA 3ZJUA 1UDZA 1WK9A 1WNZA 2WFEA 5AGHA 5AGJA 2V0CA 1WK8A 5AGIA 1ILEA 5AGTA 2V0GA 2WFGA 3ZJVA 4CQNA 1WKBA 2BYTA 5AGRA 2AJGA 3PZ5A 3O0AA 3ZGZA 1FFYA 3ZJTA 3PZ0A 1JZQA 4K48A 2AJIA 1UE0A 1H3NA
chains in the Genus database with same CATH topology
4AQ7A 1OBCA 4AS1A 1OBHA 5AGSA 1WNYA 1QU2A 4ARCA 1WZ2A 1WKAA 4ARIA 2AJHA 4K47A 3PZ6A 1JZSA 2BTEA 2WFDA 1QU3A 1IVSA 1GAXA 3ZJUA 1UDZA 1WK9A 1WNZA 2WFEA 5AGHA 5AGJA 2V0CA 1WK8A 5AGIA 1ILEA 5AGTA 2V0GA 2WFGA 3ZJVA 4CQNA 1WKBA 2BYTA 5AGRA 2AJGA 3PZ5A 3O0AA 3ZGZA 1FFYA 3ZJTA 3PZ0A 1JZQA 4K48A 2AJIA 1UE0A 1H3NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AQ7 A;  1OBC A;  4AS1 A;  1OBH A;  5AGS A;  1WNY A;  1QU2 A;  4ARC A;  1WZ2 A;  1WKA A;  4ARI A;  2AJH A;  4K47 A;  3PZ6 A;  1JZS A;  2BTE A;  2WFD A;  1QU3 A;  1IVS A;  1GAX A;  3ZJU A;  1UDZ A;  1WK9 A;  1WNZ A;  2WFE A;  5AGH A;  5AGJ A;  2V0C A;  1WK8 A;  5AGI A;  1ILE A;  5AGT A;  2V0G A;  2WFG A;  3ZJV A;  4CQN A;  1WKB A;  2BYT A;  5AGR A;  2AJG A;  3PZ5 A;  3O0A A;  3ZGZ A;  1FFY A;  3ZJT A;  3PZ0 A;  1JZQ A;  4K48 A;  2AJI A;  1UE0 A;  1H3N A; 
#chains in the Genus database with same CATH topology
 4AQ7 A;  1OBC A;  4AS1 A;  1OBH A;  5AGS A;  1WNY A;  1QU2 A;  4ARC A;  1WZ2 A;  1WKA A;  4ARI A;  2AJH A;  4K47 A;  3PZ6 A;  1JZS A;  2BTE A;  2WFD A;  1QU3 A;  1IVS A;  1GAX A;  3ZJU A;  1UDZ A;  1WK9 A;  1WNZ A;  2WFE A;  5AGH A;  5AGJ A;  2V0C A;  1WK8 A;  5AGI A;  1ILE A;  5AGT A;  2V0G A;  2WFG A;  3ZJV A;  4CQN A;  1WKB A;  2BYT A;  5AGR A;  2AJG A;  3PZ5 A;  3O0A A;  3ZGZ A;  1FFY A;  3ZJT A;  3PZ0 A;  1JZQ A;  4K48 A;  2AJI A;  1UE0 A;  1H3N A; 
#chains in the Genus database with same CATH homology
 4AQ7 A;  1OBC A;  4AS1 A;  1OBH A;  5AGS A;  1WNY A;  1QU2 A;  4ARC A;  1WZ2 A;  1WKA A;  4ARI A;  2AJH A;  4K47 A;  3PZ6 A;  1JZS A;  2BTE A;  2WFD A;  1QU3 A;  1IVS A;  1GAX A;  3ZJU A;  1UDZ A;  1WK9 A;  1WNZ A;  2WFE A;  5AGH A;  5AGJ A;  2V0C A;  1WK8 A;  5AGI A;  1ILE A;  5AGT A;  2V0G A;  2WFG A;  3ZJV A;  4CQN A;  1WKB A;  2BYT A;  5AGR A;  2AJG A;  3PZ5 A;  3O0A A;  3ZGZ A;  1FFY A;  3ZJT A;  3PZ0 A;  1JZQ A;  4K48 A;  2AJI A;  1UE0 A;  1H3N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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