1WKQA

Crystal structure of bacillus subtilis guanine deaminase. the first domain-swapped structure in the cytidine deaminase superfamily
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
158
structure length
158
Chain Sequence
HAMNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAWRNFANKKEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Guanine deaminase
publication title Crystal Structure of Bacillus subtilis Guanine Deaminase: THE FIRST DOMAIN-SWAPPED STRUCTURE IN THE CYTIDINE DEAMINASE SUPERFAMILY
pubmed doi rcsb
source organism Bacillus subtilis
total genus 52
structure length 158
sequence length 158
chains with identical sequence B
ec nomenclature ec 3.5.4.3: Guanine deaminase.
pdb deposition date 2004-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1wkqA00
1VQ2A 1WN5A 4MSDA 2Z3JA 4OWPA 2FR5A 2RPZA 5M59B 4LD2A 3OJ6A 4P9EA 4F3WA 4OCMA 4QFTA 2PW9A 4O8YA 4F7OA 2D5NA 2O7PA 4EG2A 2OG4A 4LD4A 3RZVA 4OCLB 3EX8A 1JTKA 5GAOA 4ILGC 3IJFX 2P87A 1P6OA 2QLCA 3B8FA 4JXEA 4ZD4A 3G8QA 2FR6A 5M52C 2NX8A 4OCNB 4P9DA 4KITC 3ZPCA 1UWZA 2B3ZA 4LCNA 1R5TA 2D30A 5DCAJ 4OWPB 2HXVA 1UX0A 1ZABA 2G6VA 3R2NA 4MS7A 2B3JA 1WWRA 4HRQA 2O96A 4LC5A 4OCMB 4O8YB 2KCQA 4MSJA 1ALNA 3DMOA 4K1RA 4O8XA 4MSQA 2G84A 4WIGA 4LCOA 1WN6A 4BGDC 4PQTA 3RZUA 2Z3GA 4D10F 4HRWA 3E1UA 4E0QA 1CTTA 1UX1A 1MQ0A 4I43B 2Z3IA 5CW6A 2ZNVA 2P8RA 4P9CA 1WKQA 4ZD5A 2OBCA 3OCQA 2HVWA 1YSBA 1TIYA 2O3KA 3DH1A 5C2OA 2NYTA 2O95A 4LCPA 1R5XA 4OCLA 1OI0A 2ZNRA 1YSDA 3ZEFB 4MSMA 4NQLA 4WIFA 1AF2A 2KKSA 4ZFTA 1OX7A 2A8NA 1RB7A 4ZFRA 1CTUA 2Z3HA 4G3MA 4OCNA 3ZPGA 4O8XB 3MPZA 3SBGA 1Z3AA 1UAQA 2HVVA 2W4LA
chains in the Genus database with same CATH superfamily
1VQ2A 1WN5A 4MSDA 2Z3JA 4OWPA 2FR5A 2RPZA 5M59B 4LD2A 3OJ6A 4P9EA 4F3WA 2IU0A 1VK9A 4OCMA 4QFTA 2B1GA 2PW9A 4O8YA 4F7OA 2D5NA 2O7PA 4EG2A 2OG4A 4LD4A 3RZVA 1ZCZA 4OCLB 3EX8A 2B1IA 1JTKA 5GAOA 4ILGC 3IJFX 2P87A 1P6OA 2QLCA 3B8FA 4JXEA 4ZD4A 3G8QA 2FR6A 5M52C 2NX8A 4OCNB 4P9DA 4KITC 1M9NA 1THZA 3ZPCA 1UWZA 2B3ZA 4A1OA 4LCNA 1R5TA 2D30A 5DCAJ 4OWPB 2HXVA 1UX0A 4J6EA 1ZABA 4GGMX 2G6VA 3R2NA 4MS7A 2B3JA 1WWRA 4EHIA 4HRQA 2O96A 4LC5A 4OCMB 4O8YB 2KCQA 4MSJA 1ALNA 3DMOA 2IU3A 4K1RA 4O8XA 3ZZMA 4MSQA 2G84A 4WIGA 4LCOA 1WN6A 1PL0A 4PQTA 4BGDC 3RZUA 2Z3GA 1G8MA 4HRWA 4D10F 3E1UA 4E0QA 1CTTA 1UX1A 1MQ0A 3BH1A 4I43B 2Z3IA 5CW6A 2ZNVA 2P8RA 1P4RA 1WKQA 4P9CA 4ZD5A 2OBCA 3OCQA 2HVWA 1YSBA 3VX8A 1TIYA 2O3KA 3DH1A 5C2OA 2NYTA 2O95A 4LCPA 1R5XA 4OCLA 1OI0A 1OZ0A 1YSDA 2ZNRA 3ZEFB 4MSMA 4NQLA 4WIFA 1AF2A 2KKSA 4ZFTA 1OX7A 2A8NA 1RB7A 4ZFRA 1CTUA 2Z3HA 4G3MA 4OCNA 3ZPGA 4O8XB 3MPZA 1PKXA 3SBGA 1Z3AA 1UAQA 2HVVA 2W4LA
chains in the Genus database with same CATH topology
1VQ2A 1WN5A 4MSDA 2Z3JA 4OWPA 2FR5A 2RPZA 5M59B 4LD2A 3OJ6A 4P9EA 4F3WA 4OCMA 4QFTA 2PW9A 4O8YA 4F7OA 2D5NA 2O7PA 4EG2A 2OG4A 4LD4A 3RZVA 4OCLB 3EX8A 1JTKA 5GAOA 4ILGC 3IJFX 2P87A 1P6OA 2QLCA 3B8FA 4JXEA 4ZD4A 3G8QA 2FR6A 5M52C 2NX8A 4OCNB 4P9DA 4KITC 3ZPCA 1UWZA 2B3ZA 4LCNA 1R5TA 2D30A 5DCAJ 4OWPB 2HXVA 1UX0A 1ZABA 2G6VA 3R2NA 4MS7A 2B3JA 1WWRA 4HRQA 2O96A 4LC5A 4OCMB 4O8YB 2KCQA 4MSJA 1ALNA 3DMOA 4K1RA 4O8XA 4MSQA 2G84A 4WIGA 4LCOA 1WN6A 4BGDC 4PQTA 3RZUA 2Z3GA 4D10F 4HRWA 3E1UA 4E0QA 1CTTA 1UX1A 1MQ0A 4I43B 2Z3IA 5CW6A 2ZNVA 2P8RA 4P9CA 1WKQA 4ZD5A 2OBCA 3OCQA 2HVWA 1YSBA 1TIYA 2O3KA 3DH1A 5C2OA 2NYTA 2O95A 4LCPA 1R5XA 4OCLA 1OI0A 2ZNRA 1YSDA 3ZEFB 4MSMA 4NQLA 4WIFA 1AF2A 2KKSA 4ZFTA 1OX7A 2A8NA 1RB7A 4ZFRA 1CTUA 2Z3HA 4G3MA 4OCNA 3ZPGA 4O8XB 3MPZA 3SBGA 1Z3AA 1UAQA 2HVVA 2W4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ2 A;  1WN5 A;  4MSD A;  2Z3J A;  4OWP A;  2FR5 A;  2RPZ A;  5M59 B;  4LD2 A;  3OJ6 A;  4P9E A;  4F3W A;  4OCM A;  4QFT A;  2PW9 A;  4O8Y A;  4F7O A;  2D5N A;  2O7P A;  4EG2 A;  2OG4 A;  4LD4 A;  3RZV A;  4OCL B;  3EX8 A;  1JTK A;  5GAO A;  4ILG C;  3IJF X;  2P87 A;  1P6O A;  2QLC A;  3B8F A;  4JXE A;  4ZD4 A;  3G8Q A;  2FR6 A;  5M52 C;  2NX8 A;  4OCN B;  4P9D A;  4KIT C;  3ZPC A;  1UWZ A;  2B3Z A;  4LCN A;  1R5T A;  2D30 A;  5DCA J;  4OWP B;  2HXV A;  1UX0 A;  1ZAB A;  2G6V A;  3R2N A;  4MS7 A;  2B3J A;  1WWR A;  4HRQ A;  2O96 A;  4LC5 A;  4OCM B;  4O8Y B;  2KCQ A;  4MSJ A;  1ALN A;  3DMO A;  4K1R A;  4O8X A;  4MSQ A;  2G84 A;  4WIG A;  4LCO A;  1WN6 A;  4BGD C;  4PQT A;  3RZU A;  2Z3G A;  4D10 F;  4HRW A;  3E1U A;  4E0Q A;  1CTT A;  1UX1 A;  1MQ0 A;  4I43 B;  2Z3I A;  5CW6 A;  2ZNV A;  2P8R A;  4P9C A;  1WKQ A;  4ZD5 A;  2OBC A;  3OCQ A;  2HVW A;  1YSB A;  1TIY A;  2O3K A;  3DH1 A;  5C2O A;  2NYT A;  2O95 A;  4LCP A;  1R5X A;  4OCL A;  1OI0 A;  2ZNR A;  1YSD A;  3ZEF B;  4MSM A;  4NQL A;  4WIF A;  1AF2 A;  2KKS A;  4ZFT A;  1OX7 A;  2A8N A;  1RB7 A;  4ZFR A;  1CTU A;  2Z3H A;  4G3M A;  4OCN A;  3ZPG A;  4O8X B;  3MPZ A;  3SBG A;  1Z3A A;  1UAQ A;  2HVV A;  2W4L A; 
#chains in the Genus database with same CATH topology
 1VQ2 A;  1WN5 A;  4MSD A;  2Z3J A;  4OWP A;  2FR5 A;  2RPZ A;  5M59 B;  4LD2 A;  3OJ6 A;  4P9E A;  4F3W A;  2IU0 A;  1VK9 A;  4OCM A;  4QFT A;  2B1G A;  2PW9 A;  4O8Y A;  4F7O A;  2D5N A;  2O7P A;  4EG2 A;  2OG4 A;  4LD4 A;  3RZV A;  1ZCZ A;  4OCL B;  3EX8 A;  2B1I A;  1JTK A;  5GAO A;  4ILG C;  3IJF X;  2P87 A;  1P6O A;  2QLC A;  3B8F A;  4JXE A;  4ZD4 A;  3G8Q A;  2FR6 A;  5M52 C;  2NX8 A;  4OCN B;  4P9D A;  4KIT C;  1M9N A;  1THZ A;  3ZPC A;  1UWZ A;  2B3Z A;  4A1O A;  4LCN A;  1R5T A;  2D30 A;  5DCA J;  4OWP B;  2HXV A;  1UX0 A;  4J6E A;  1ZAB A;  4GGM X;  2G6V A;  3R2N A;  4MS7 A;  2B3J A;  1WWR A;  4EHI A;  4HRQ A;  2O96 A;  4LC5 A;  4OCM B;  4O8Y B;  2KCQ A;  4MSJ A;  1ALN A;  3DMO A;  2IU3 A;  4K1R A;  4O8X A;  3ZZM A;  4MSQ A;  2G84 A;  4WIG A;  4LCO A;  1WN6 A;  1PL0 A;  4PQT A;  4BGD C;  3RZU A;  2Z3G A;  1G8M A;  4HRW A;  4D10 F;  3E1U A;  4E0Q A;  1CTT A;  1UX1 A;  1MQ0 A;  3BH1 A;  4I43 B;  2Z3I A;  5CW6 A;  2ZNV A;  2P8R A;  1P4R A;  1WKQ A;  4P9C A;  4ZD5 A;  2OBC A;  3OCQ A;  2HVW A;  1YSB A;  3VX8 A;  1TIY A;  2O3K A;  3DH1 A;  5C2O A;  2NYT A;  2O95 A;  4LCP A;  1R5X A;  4OCL A;  1OI0 A;  1OZ0 A;  1YSD A;  2ZNR A;  3ZEF B;  4MSM A;  4NQL A;  4WIF A;  1AF2 A;  2KKS A;  4ZFT A;  1OX7 A;  2A8N A;  1RB7 A;  4ZFR A;  1CTU A;  2Z3H A;  4G3M A;  4OCN A;  3ZPG A;  4O8X B;  3MPZ A;  1PKX A;  3SBG A;  1Z3A A;  1UAQ A;  2HVV A;  2W4L A; 
#chains in the Genus database with same CATH homology
 1VQ2 A;  1WN5 A;  4MSD A;  2Z3J A;  4OWP A;  2FR5 A;  2RPZ A;  5M59 B;  4LD2 A;  3OJ6 A;  4P9E A;  4F3W A;  4OCM A;  4QFT A;  2PW9 A;  4O8Y A;  4F7O A;  2D5N A;  2O7P A;  4EG2 A;  2OG4 A;  4LD4 A;  3RZV A;  4OCL B;  3EX8 A;  1JTK A;  5GAO A;  4ILG C;  3IJF X;  2P87 A;  1P6O A;  2QLC A;  3B8F A;  4JXE A;  4ZD4 A;  3G8Q A;  2FR6 A;  5M52 C;  2NX8 A;  4OCN B;  4P9D A;  4KIT C;  3ZPC A;  1UWZ A;  2B3Z A;  4LCN A;  1R5T A;  2D30 A;  5DCA J;  4OWP B;  2HXV A;  1UX0 A;  1ZAB A;  2G6V A;  3R2N A;  4MS7 A;  2B3J A;  1WWR A;  4HRQ A;  2O96 A;  4LC5 A;  4OCM B;  4O8Y B;  2KCQ A;  4MSJ A;  1ALN A;  3DMO A;  4K1R A;  4O8X A;  4MSQ A;  2G84 A;  4WIG A;  4LCO A;  1WN6 A;  4BGD C;  4PQT A;  3RZU A;  2Z3G A;  4D10 F;  4HRW A;  3E1U A;  4E0Q A;  1CTT A;  1UX1 A;  1MQ0 A;  4I43 B;  2Z3I A;  5CW6 A;  2ZNV A;  2P8R A;  4P9C A;  1WKQ A;  4ZD5 A;  2OBC A;  3OCQ A;  2HVW A;  1YSB A;  1TIY A;  2O3K A;  3DH1 A;  5C2O A;  2NYT A;  2O95 A;  4LCP A;  1R5X A;  4OCL A;  1OI0 A;  2ZNR A;  1YSD A;  3ZEF B;  4MSM A;  4NQL A;  4WIF A;  1AF2 A;  2KKS A;  4ZFT A;  1OX7 A;  2A8N A;  1RB7 A;  4ZFR A;  1CTU A;  2Z3H A;  4G3M A;  4OCN A;  3ZPG A;  4O8X B;  3MPZ A;  3SBG A;  1Z3A A;  1UAQ A;  2HVV A;  2W4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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