1WMGA

Crystal structure of the unc5h2 death domain
Total Genus 26
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
90
structure length
90
Chain Sequence
YAFKIPLSIRQKICSSLDAPNSRGNDWRLLAQKLSMDRYLNYFATKASPTGVILDLWEARQQDDGDLNSLASALEEMGKSEMLVAMATDG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
molecule keywords netrin receptor Unc5h2
publication title Structure of the UNC5H2 death domain
pubmed doi rcsb
source organism Mus musculus
total genus 26
structure length 90
sequence length 90
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2004-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1wmgA00
4DWNA 2DBHA 2MB9A 4A2QA 3J63A 2L9MA 1Z6TA 4IZ7B 2N7ZA 2KM6A 4IZ5E 4IZAB 3CL3A 3KATA 2MN4A 1C15A 2B1WA 3YGSP 4JUPA 4O9LA 3LQQA 1FADA 2IB1A 1WMGA 3MOPG 4F44A 2NAQA 2LS7A 3CRDA 4RHWA 2A5YB 4N1LA 2HM2Q 2YU0A 4RHWE 4I16A 2DBGA 2YVIA 1N3KA 1YGOA 2N97A 1A1ZA 1DDFA 1E3YA 2DBDA 2N1FA 1WH4A 3LQRA 1D2ZA 2O71A 4UZ0A 3EZQB 2L6AA 2N80A 4P4HI 4ZBWA 4A2WA 2NSNA 3MOPK 1DGNA 2G7RA 4D8OA 4F42A 4P4HA 4JQWA 2F1SA 3YGSC 2DO9A 2VGQA 3QF2A 1ICHA 2BBZA 1NGRA 2N83A 2MPCA 1E41A 2DBFA 1A1WA 3MOPA 1PN5A 2NZ7A 1WXPA 2YQFA 4O6XA 4N1KA 2N00A 3EZQA 2M5VA 2KN6A 2LWDA 4M9XA 1CWWA 2P1HA 4LWDA 4O7QA 1UCPA 2A9IA 4M9ZA 4E9MA 2BBRA 2MS8A 4NQKA 3J6JA 4N1JA 1D2ZB 3T6PA 2MS7A 2GF5A 1CY5A 2YGSA 4QOBA 2LWEA 2D96A 2OF5H 4EWIA 2OF5A 4O9FA 4FH0A 4M9SA
chains in the Genus database with same CATH superfamily
4DWNA 2DBHA 2MB9A 4A2QA 3J63A 2L9MA 1Z6TA 4IZ7B 2N7ZA 2KM6A 2MJMA 4IZ5E 4IZAB 3CL3A 3KATA 2MN4A 1C15A 2B1WA 3YGSP 4JUPA 4O9LA 3LQQA 1FADA 2IB1A 1WMGA 3MOPG 4F44A 2NAQA 2LS7A 3CRDA 4RHWA 2A5YB 4N1LA 2HM2Q 2YU0A 4RHWE 4I16A 2DBGA 2YVIA 1N3KA 1YGOA 2N97A 1A1ZA 1DDFA 1E3YA 2DBDA 2N1FA 1WH4A 3LQRA 1D2ZA 2O71A 4UZ0A 3EZQB 2L6AA 2N80A 4P4HI 4ZBWA 4A2WA 2NSNA 3MOPK 1DGNA 2G7RA 4D8OA 4F42A 4P4HA 4JQWA 2F1SA 3YGSC 2DO9A 2VGQA 3QF2A 1ICHA 2BBZA 1NGRA 2N83A 2MPCA 1E41A 2DBFA 1A1WA 3MOPA 1PN5A 2NZ7A 1WXPA 2YQFA 4O6XA 4N1KA 2N00A 3EZQA 2M5VA 2KN6A 2LWDA 4M9XA 1CWWA 2P1HA 4LWDA 4O7QA 2XV9A 1UCPA 2A9IA 4M9ZA 4E9MA 2BBRA 2MS8A 4NQKA 3J6JA 4N1JA 1D2ZB 3T6PA 2MS7A 2GF5A 1CY5A 2YGSA 4QOBA 2LWEA 2D96A 2OF5H 4EWIA 2OF5A 4O9FA 4FH0A 4M9SA
chains in the Genus database with same CATH topology
4DWNA 2DBHA 2MB9A 4A2QA 3J63A 2L9MA 1Z6TA 4IZ7B 2N7ZA 2KM6A 2MJMA 4IZ5E 4IZAB 3CL3A 3KATA 2MN4A 1C15A 2B1WA 3YGSP 4JUPA 4O9LA 3LQQA 1FADA 2IB1A 1WMGA 3MOPG 4F44A 2NAQA 2LS7A 3CRDA 4RHWA 2A5YB 4N1LA 2HM2Q 2YU0A 4RHWE 4I16A 2DBGA 2YVIA 1N3KA 1YGOA 2N97A 1A1ZA 1DDFA 1E3YA 2DBDA 2N1FA 1WH4A 3LQRA 1D2ZA 2O71A 4UZ0A 3EZQB 2L6AA 2N80A 4P4HI 4ZBWA 4A2WA 2NSNA 3MOPK 1DGNA 2G7RA 4D8OA 4F42A 4P4HA 4JQWA 2F1SA 3YGSC 2DO9A 2VGQA 3QF2A 1ICHA 2BBZA 1NGRA 2N83A 2MPCA 1E41A 2DBFA 1A1WA 3MOPA 1PN5A 2NZ7A 1WXPA 2YQFA 4O6XA 4N1KA 2N00A 3EZQA 2M5VA 2KN6A 2LWDA 4M9XA 1CWWA 2P1HA 4LWDA 4O7QA 2XV9A 1UCPA 2A9IA 4M9ZA 4E9MA 2BBRA 2MS8A 4NQKA 3J6JA 4N1JA 1D2ZB 3T6PA 2MS7A 2GF5A 1CY5A 2YGSA 4QOBA 2LWEA 2D96A 2OF5H 4EWIA 2OF5A 4O9FA 4FH0A 4M9SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DWN A;  2DBH A;  2MB9 A;  4A2Q A;  3J63 A;  2L9M A;  1Z6T A;  4IZ7 B;  2N7Z A;  2KM6 A;  4IZ5 E;  4IZA B;  3CL3 A;  3KAT A;  2MN4 A;  1C15 A;  2B1W A;  3YGS P;  4JUP A;  4O9L A;  3LQQ A;  1FAD A;  2IB1 A;  1WMG A;  3MOP G;  4F44 A;  2NAQ A;  2LS7 A;  3CRD A;  4RHW A;  2A5Y B;  4N1L A;  2HM2 Q;  2YU0 A;  4RHW E;  4I16 A;  2DBG A;  2YVI A;  1N3K A;  1YGO A;  2N97 A;  1A1Z A;  1DDF A;  1E3Y A;  2DBD A;  2N1F A;  1WH4 A;  3LQR A;  1D2Z A;  2O71 A;  4UZ0 A;  3EZQ B;  2L6A A;  2N80 A;  4P4H I;  4ZBW A;  4A2W A;  2NSN A;  3MOP K;  1DGN A;  2G7R A;  4D8O A;  4F42 A;  4P4H A;  4JQW A;  2F1S A;  3YGS C;  2DO9 A;  2VGQ A;  3QF2 A;  1ICH A;  2BBZ A;  1NGR A;  2N83 A;  2MPC A;  1E41 A;  2DBF A;  1A1W A;  3MOP A;  1PN5 A;  2NZ7 A;  1WXP A;  2YQF A;  4O6X A;  4N1K A;  2N00 A;  3EZQ A;  2M5V A;  2KN6 A;  2LWD A;  4M9X A;  1CWW A;  2P1H A;  4LWD A;  4O7Q A;  1UCP A;  2A9I A;  4M9Z A;  4E9M A;  2BBR A;  2MS8 A;  4NQK A;  3J6J A;  4N1J A;  1D2Z B;  3T6P A;  2MS7 A;  2GF5 A;  1CY5 A;  2YGS A;  4QOB A;  2LWE A;  2D96 A;  2OF5 H;  4EWI A;  2OF5 A;  4O9F A;  4FH0 A;  4M9S A; 
#chains in the Genus database with same CATH topology
 4DWN A;  2DBH A;  2MB9 A;  4A2Q A;  3J63 A;  2L9M A;  1Z6T A;  4IZ7 B;  2N7Z A;  2KM6 A;  2MJM A;  4IZ5 E;  4IZA B;  3CL3 A;  3KAT A;  2MN4 A;  1C15 A;  2B1W A;  3YGS P;  4JUP A;  4O9L A;  3LQQ A;  1FAD A;  2IB1 A;  1WMG A;  3MOP G;  4F44 A;  2NAQ A;  2LS7 A;  3CRD A;  4RHW A;  2A5Y B;  4N1L A;  2HM2 Q;  2YU0 A;  4RHW E;  4I16 A;  2DBG A;  2YVI A;  1N3K A;  1YGO A;  2N97 A;  1A1Z A;  1DDF A;  1E3Y A;  2DBD A;  2N1F A;  1WH4 A;  3LQR A;  1D2Z A;  2O71 A;  4UZ0 A;  3EZQ B;  2L6A A;  2N80 A;  4P4H I;  4ZBW A;  4A2W A;  2NSN A;  3MOP K;  1DGN A;  2G7R A;  4D8O A;  4F42 A;  4P4H A;  4JQW A;  2F1S A;  3YGS C;  2DO9 A;  2VGQ A;  3QF2 A;  1ICH A;  2BBZ A;  1NGR A;  2N83 A;  2MPC A;  1E41 A;  2DBF A;  1A1W A;  3MOP A;  1PN5 A;  2NZ7 A;  1WXP A;  2YQF A;  4O6X A;  4N1K A;  2N00 A;  3EZQ A;  2M5V A;  2KN6 A;  2LWD A;  4M9X A;  1CWW A;  2P1H A;  4LWD A;  4O7Q A;  2XV9 A;  1UCP A;  2A9I A;  4M9Z A;  4E9M A;  2BBR A;  2MS8 A;  4NQK A;  3J6J A;  4N1J A;  1D2Z B;  3T6P A;  2MS7 A;  2GF5 A;  1CY5 A;  2YGS A;  4QOB A;  2LWE A;  2D96 A;  2OF5 H;  4EWI A;  2OF5 A;  4O9F A;  4FH0 A;  4M9S A; 
#chains in the Genus database with same CATH homology
 4DWN A;  2DBH A;  2MB9 A;  4A2Q A;  3J63 A;  2L9M A;  1Z6T A;  4IZ7 B;  2N7Z A;  2KM6 A;  2MJM A;  4IZ5 E;  4IZA B;  3CL3 A;  3KAT A;  2MN4 A;  1C15 A;  2B1W A;  3YGS P;  4JUP A;  4O9L A;  3LQQ A;  1FAD A;  2IB1 A;  1WMG A;  3MOP G;  4F44 A;  2NAQ A;  2LS7 A;  3CRD A;  4RHW A;  2A5Y B;  4N1L A;  2HM2 Q;  2YU0 A;  4RHW E;  4I16 A;  2DBG A;  2YVI A;  1N3K A;  1YGO A;  2N97 A;  1A1Z A;  1DDF A;  1E3Y A;  2DBD A;  2N1F A;  1WH4 A;  3LQR A;  1D2Z A;  2O71 A;  4UZ0 A;  3EZQ B;  2L6A A;  2N80 A;  4P4H I;  4ZBW A;  4A2W A;  2NSN A;  3MOP K;  1DGN A;  2G7R A;  4D8O A;  4F42 A;  4P4H A;  4JQW A;  2F1S A;  3YGS C;  2DO9 A;  2VGQ A;  3QF2 A;  1ICH A;  2BBZ A;  1NGR A;  2N83 A;  2MPC A;  1E41 A;  2DBF A;  1A1W A;  3MOP A;  1PN5 A;  2NZ7 A;  1WXP A;  2YQF A;  4O6X A;  4N1K A;  2N00 A;  3EZQ A;  2M5V A;  2KN6 A;  2LWD A;  4M9X A;  1CWW A;  2P1H A;  4LWD A;  4O7Q A;  2XV9 A;  1UCP A;  2A9I A;  4M9Z A;  4E9M A;  2BBR A;  2MS8 A;  4NQK A;  3J6J A;  4N1J A;  1D2Z B;  3T6P A;  2MS7 A;  2GF5 A;  1CY5 A;  2YGS A;  4QOB A;  2LWE A;  2D96 A;  2OF5 H;  4EWI A;  2OF5 A;  4O9F A;  4FH0 A;  4M9S A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...