1WMRA

Crystal structure of isopullulanase from aspergillus niger atcc 9642
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
549
structure length
549
Chain Sequence
REFMAVTANNSQLLTWWHNTGEINTQTPVADGNVRQSGLYSVKVQTTPASSSLYYDSFVYLAIPGNGMSDQLQYTQGYNQTQAWTSFLYSHDATVKISRNGSSANSNVVIRPTSLNFPVRYDNQSVYITVPYSPTGYRFSVEFDDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMYPGTILQDVFYHTDDDGLKMYYSNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQAYANAGNNPGIFGAVNNYLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQITVTDFSIEGFTVGNTTITASNAASVGRIDGVDPAYAGSVHYID
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Isopullulanase
publication title Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
pubmed doi rcsb
source organism Aspergillus niger
molecule tags Hydrolase
total genus 165
structure length 549
sequence length 549
chains with identical sequence B
ec nomenclature ec 3.2.1.57: Isopullulanase.
pdb deposition date 2004-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03718 Glyco_hydro_49 Glycosyl hydrolase family 49
A PF18783 IPU_b_solenoid Isopullulanase beta-solenoid repeat
A PF18841 B_solenoid_dext Beta solenoid repeat from Dextranase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.350.10 Mainly Beta Sandwich Dex49a from penicillium minioluteum complex, domain 1 Dextranase, N-terminal 1wmrA01
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1wmrA02
2O0WA 3GQAA 1BN8A 1AIRA 1KCDA 3GRHA 4XR6A 1O8HA 4Z03A 1O8KA 2O17A 3ZSCA 3GQ8A 1O8FA 1IDKA 4MR0A 4YZ0A 1RMGA 1PE9A 4U4BA 4YZQA 4W8QA 4XNFA 4U49A 1DBOA 4XLEA 1O8MA 4MXNA 1OGMX 3B90A 3UW0A 2ODLA 2VJJA 2NTBA 2BSPA 1RU4A 1JRGA 1NHCA 4YZAA 1H80A 2IQ7A 1IDJA 1O88A 1OOCA 4XN3A 4C2LA 4XMYA 4XOTA 4AVZA 4XLCA 2VJIA 4Z05A 1HG8A 2X6WA 3GQ9A 3VSVA 1O8GA 1KTWA 2O04A 4YELA 2UVFA 2X3HA 2Z8GA 1GQ8A 1XG2A 1QCXA 2NSTA 4XN0A 4W8TA 1X0CA 2O0VA 2NT6A 1PLUA 2X6XA 4URRA 4XORA 4OJPA 2QX3A 4OZZA 4XKVA 1EE6A 2VBMA 2PECA 3FY3A 2INVA 4OJLA 2PYHA 4Z06A 4W8SA 3VSUA 5C1CA 4XOPA 4YEJA 1WMRA 2X6YA 3WWGA 1O8JA 3ZPPA 3VMVA 4YZXA 1O8IA 1JTAA 4XL9A 2NZMA 4I84A 1O8DA 2NTPA 1DBGA 4XLFA 1IA5A 1QJVA 1IB4A 2PYGA 2X85A 3B8YA 2INUA 3B4NA 1K5CA 1O8LA 3GQ7A 2VBKA 3EQNA 1BHEA 2NSPA 3JURA 5C1EA 1RWRA 3VSTA 2EWEA 2QY1A 2VBEA 4OJOA 5AMVA 3EQOA 3SUCA 4OJ6A 3LMWA 4NK8A 1OFLA 1KCCA 4XLHA 4XM3A 3VMWA 1O8EA 4OZYA 2NT9A 4NK6A 1CZFA 3T9GA 1OFMA 4OJ5A 3KRGA 4W8RA 1VBLA 4XONA 2NTQA 2QXZA 4HWVA 4PMHA 4EW9A 2O1DA 4XKWA 1OGOX 2UVEA 4XLAA 1PXZA 4XQFA
chains in the Genus database with same CATH superfamily
2O0WA 2XTXA 1KQ5A 3GQAA 1BN8A 1AIRA 1KCDA 3JX8A 3GRHA 4YEIA 4XR6A 1O8HA 3ML3A 2BM6A 4Z03A 1O8KA 4OPWA 2O17A 3ZSCA 3GQ8A 1O8FA 1IDKA 4MR0A 1HF2A 2VFPA 4YZ0A 1RMGA 1PE9A 4U4BA 4YC5A 4YZQA 1LLZA 4W8QA 4XNFA 2XTYA 4U49A 1DBOA 4XLEA 1O8MA 2XTWA 4MXNA 1OGMX 3B90A 3UW0A 1QQ1A 2BX6A 2BM5A 2ODLA 2QZAA 3SY2A 2VJJA 2NTBA 2BSPA 1RU4A 2VFMA 3SYJA 1JRGA 1NHCA 4YZAA 1H80A 2F3LA 1IDJA 2IQ7A 2XC1A 1O88A 1LM1A 1OOCA 1OFDA 4XN3A 4C2LA 3N6ZA 1TYXA 4XMYA 4XOTA 4AVZA 4XLCA 2VJIA 3BH7B 4Z05A 1DABA 2V5IA 1HG8A 2X6WA 3GQ9A 3PSSA 1O8GA 3VSVA 4KH3A 1KTWA 2XT2A 2O04A 4YELA 2UVFA 2X3HA 2Z8GA 1GQ8A 1CLWA 2B0RA 1XG2A 1QCXA 2NSTA 4XN0A 4OM9A 4W8TA 3PETA 1X0CA 2O0VA 1TYWA 1TYUA 2IOUG 3DU1X 2NT6A 1PLUA 2X6XA 5JMCB 4URRA 4XORA 2BM4A 1QA1A 1K8FA 1TYVA 2VFNA 4OJPA 2QX3A 2BM7A 2XT4A 4OZZA 4XKVA 1EE6A 2O6WA 2VBMA 3PSZA 2PECA 3FY3A 2INVA 1L1IA 4OJLA 2PYHA 4Z06A 3AK5A 4W8SA 3H09A 3VSUA 2YUHA 5C1CA 4XOPA 4YEJA 1WMRA 2X6YA 2J8KA 3LJYA 3WWGA 1O8JA 3ZPPA 2W7ZA 3VMVA 3NAWA 4JRAC 4YZXA 1O8IA 1JTAA 1K4ZA 1TSPA 3LYCA 4V02C 2NZMA 4XL9A 4I84A 1O8DA 2NTPA 1DBGA 2QYUA 4XLFA 1IA5A 1QJVA 1WXRA 1IB4A 2PYGA 2X85A 3B8YA 2INUA 1OFEA 3B4NA 1O8LA 1QRCA 3GQ7A 5JLVC 2VBKA 3EQNA 1K5CA 1BHEA 2NSPA 3JURA 5C1EA 2VFOA 1RWRA 3VSTA 2EWEA 4YDTA 1LLWA 2QY1A 1EZGA 2VBEA 4OJOA 4YFOA 5AMVA 3SZEA 3BH6B 3EQOA 3SUCA 4OJ6A 3LMWA 2G0YA 4NK8A 1OFLA 4YCQA 1KCCA 1QRBA 1QA2A 4XLHA 3TH0A 4XM3A 3VMWA 1O8EA 4OZYA 3RIQA 2NT9A 4NK6A 1CZFA 3T9GA 1OFMA 4OJ5A 3KRGA 4W8RA 1VBLA 2J8IA 3SQVA 4XONA 5DNSA 2NTQA 2QXZA 4HWVA 3P4GA 4PMHA 2O1DA 2VFQA 4EW9A 4XKWA 1QA3A 3N90A 1OGOX 2UVEA 3NB2A 1PXZA 4XLAA 4XQFA 1EA0A
chains in the Genus database with same CATH topology
2O0WA 3GQAA 1BN8A 1AIRA 1KCDA 3GRHA 4XR6A 1O8HA 4Z03A 1O8KA 2O17A 3ZSCA 3GQ8A 1O8FA 1IDKA 4MR0A 4YZ0A 1RMGA 1PE9A 4U4BA 4YZQA 4W8QA 4XNFA 4U49A 1DBOA 4XLEA 1O8MA 4MXNA 1OGMX 3B90A 3UW0A 2ODLA 2VJJA 2NTBA 2BSPA 1RU4A 1JRGA 1NHCA 4YZAA 1H80A 2IQ7A 1IDJA 1O88A 1OOCA 4XN3A 4C2LA 4XMYA 4XOTA 4AVZA 4XLCA 2VJIA 4Z05A 1HG8A 2X6WA 3GQ9A 3VSVA 1O8GA 1KTWA 2O04A 4YELA 2UVFA 2X3HA 2Z8GA 1GQ8A 1XG2A 1QCXA 2NSTA 4XN0A 4W8TA 1X0CA 2O0VA 2NT6A 1PLUA 2X6XA 4URRA 4XORA 4OJPA 2QX3A 4OZZA 4XKVA 1EE6A 2VBMA 2PECA 3FY3A 2INVA 4OJLA 2PYHA 4Z06A 4W8SA 3VSUA 5C1CA 4XOPA 4YEJA 1WMRA 2X6YA 3WWGA 1O8JA 3ZPPA 3VMVA 4YZXA 1O8IA 1JTAA 4XL9A 2NZMA 4I84A 1O8DA 2NTPA 1DBGA 4XLFA 1IA5A 1QJVA 1IB4A 2PYGA 2X85A 3B8YA 2INUA 3B4NA 1K5CA 1O8LA 3GQ7A 2VBKA 3EQNA 1BHEA 2NSPA 3JURA 5C1EA 1RWRA 3VSTA 2EWEA 2QY1A 2VBEA 4OJOA 5AMVA 3EQOA 3SUCA 4OJ6A 3LMWA 4NK8A 1OFLA 1KCCA 4XLHA 4XM3A 3VMWA 1O8EA 4OZYA 2NT9A 4NK6A 1CZFA 3T9GA 1OFMA 4OJ5A 3KRGA 4W8RA 1VBLA 4XONA 2NTQA 2QXZA 4HWVA 4PMHA 4EW9A 2O1DA 4XKWA 1OGOX 2UVEA 4XLAA 1PXZA 4XQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O0W A;  3GQA A;  1BN8 A;  1AIR A;  1KCD A;  3GRH A;  4XR6 A;  1O8H A;  4Z03 A;  1O8K A;  2O17 A;  3ZSC A;  3GQ8 A;  1O8F A;  1IDK A;  4MR0 A;  4YZ0 A;  1RMG A;  1PE9 A;  4U4B A;  4YZQ A;  4W8Q A;  4XNF A;  4U49 A;  1DBO A;  4XLE A;  1O8M A;  4MXN A;  1OGM X;  3B90 A;  3UW0 A;  2ODL A;  2VJJ A;  2NTB A;  2BSP A;  1RU4 A;  1JRG A;  1NHC A;  4YZA A;  1H80 A;  2IQ7 A;  1IDJ A;  1O88 A;  1OOC A;  4XN3 A;  4C2L A;  4XMY A;  4XOT A;  4AVZ A;  4XLC A;  2VJI A;  4Z05 A;  1HG8 A;  2X6W A;  3GQ9 A;  3VSV A;  1O8G A;  1KTW A;  2O04 A;  4YEL A;  2UVF A;  2X3H A;  2Z8G A;  1GQ8 A;  1XG2 A;  1QCX A;  2NST A;  4XN0 A;  4W8T A;  1X0C A;  2O0V A;  2NT6 A;  1PLU A;  2X6X A;  4URR A;  4XOR A;  4OJP A;  2QX3 A;  4OZZ A;  4XKV A;  1EE6 A;  2VBM A;  2PEC A;  3FY3 A;  2INV A;  4OJL A;  2PYH A;  4Z06 A;  4W8S A;  3VSU A;  5C1C A;  4XOP A;  4YEJ A;  1WMR A;  2X6Y A;  3WWG A;  1O8J A;  3ZPP A;  3VMV A;  4YZX A;  1O8I A;  1JTA A;  4XL9 A;  2NZM A;  4I84 A;  1O8D A;  2NTP A;  1DBG A;  4XLF A;  1IA5 A;  1QJV A;  1IB4 A;  2PYG A;  2X85 A;  3B8Y A;  2INU A;  3B4N A;  1K5C A;  1O8L A;  3GQ7 A;  2VBK A;  3EQN A;  1BHE A;  2NSP A;  3JUR A;  5C1E A;  1RWR A;  3VST A;  2EWE A;  2QY1 A;  2VBE A;  4OJO A;  5AMV A;  3EQO A;  3SUC A;  4OJ6 A;  3LMW A;  4NK8 A;  1OFL A;  1KCC A;  4XLH A;  4XM3 A;  3VMW A;  1O8E A;  4OZY A;  2NT9 A;  4NK6 A;  1CZF A;  3T9G A;  1OFM A;  4OJ5 A;  3KRG A;  4W8R A;  1VBL A;  4XON A;  2NTQ A;  2QXZ A;  4HWV A;  4PMH A;  4EW9 A;  2O1D A;  4XKW A;  1OGO X;  2UVE A;  4XLA A;  1PXZ A;  4XQF A; 
#chains in the Genus database with same CATH topology
 2O0W A;  2XTX A;  1KQ5 A;  3GQA A;  1BN8 A;  1AIR A;  1KCD A;  3JX8 A;  3GRH A;  4YEI A;  4XR6 A;  1O8H A;  3ML3 A;  2BM6 A;  4Z03 A;  1O8K A;  4OPW A;  2O17 A;  3ZSC A;  3GQ8 A;  1O8F A;  1IDK A;  4MR0 A;  1HF2 A;  2VFP A;  4YZ0 A;  1RMG A;  1PE9 A;  4U4B A;  4YC5 A;  4YZQ A;  1LLZ A;  4W8Q A;  4XNF A;  2XTY A;  4U49 A;  1DBO A;  4XLE A;  1O8M A;  2XTW A;  4MXN A;  1OGM X;  3B90 A;  3UW0 A;  1QQ1 A;  2BX6 A;  2BM5 A;  2ODL A;  2QZA A;  3SY2 A;  2VJJ A;  2NTB A;  2BSP A;  1RU4 A;  2VFM A;  3SYJ A;  1JRG A;  1NHC A;  4YZA A;  1H80 A;  2F3L A;  1IDJ A;  2IQ7 A;  2XC1 A;  1O88 A;  1LM1 A;  1OOC A;  1OFD A;  4XN3 A;  4C2L A;  3N6Z A;  1TYX A;  4XMY A;  4XOT A;  4AVZ A;  4XLC A;  2VJI A;  3BH7 B;  4Z05 A;  1DAB A;  2V5I A;  1HG8 A;  2X6W A;  3GQ9 A;  3PSS A;  1O8G A;  3VSV A;  4KH3 A;  1KTW A;  2XT2 A;  2O04 A;  4YEL A;  2UVF A;  2X3H A;  2Z8G A;  1GQ8 A;  1CLW A;  2B0R A;  1XG2 A;  1QCX A;  2NST A;  4XN0 A;  4OM9 A;  4W8T A;  3PET A;  1X0C A;  2O0V A;  1TYW A;  1TYU A;  2IOU G;  3DU1 X;  2NT6 A;  1PLU A;  2X6X A;  5JMC B;  4URR A;  4XOR A;  2BM4 A;  1QA1 A;  1K8F A;  1TYV A;  2VFN A;  4OJP A;  2QX3 A;  2BM7 A;  2XT4 A;  4OZZ A;  4XKV A;  1EE6 A;  2O6W A;  2VBM A;  3PSZ A;  2PEC A;  3FY3 A;  2INV A;  1L1I A;  4OJL A;  2PYH A;  4Z06 A;  3AK5 A;  4W8S A;  3H09 A;  3VSU A;  2YUH A;  5C1C A;  4XOP A;  4YEJ A;  1WMR A;  2X6Y A;  2J8K A;  3LJY A;  3WWG A;  1O8J A;  3ZPP A;  2W7Z A;  3VMV A;  3NAW A;  4JRA C;  4YZX A;  1O8I A;  1JTA A;  1K4Z A;  1TSP A;  3LYC A;  4V02 C;  2NZM A;  4XL9 A;  4I84 A;  1O8D A;  2NTP A;  1DBG A;  2QYU A;  4XLF A;  1IA5 A;  1QJV A;  1WXR A;  1IB4 A;  2PYG A;  2X85 A;  3B8Y A;  2INU A;  1OFE A;  3B4N A;  1O8L A;  1QRC A;  3GQ7 A;  5JLV C;  2VBK A;  3EQN A;  1K5C A;  1BHE A;  2NSP A;  3JUR A;  5C1E A;  2VFO A;  1RWR A;  3VST A;  2EWE A;  4YDT A;  1LLW A;  2QY1 A;  1EZG A;  2VBE A;  4OJO A;  4YFO A;  5AMV A;  3SZE A;  3BH6 B;  3EQO A;  3SUC A;  4OJ6 A;  3LMW A;  2G0Y A;  4NK8 A;  1OFL A;  4YCQ A;  1KCC A;  1QRB A;  1QA2 A;  4XLH A;  3TH0 A;  4XM3 A;  3VMW A;  1O8E A;  4OZY A;  3RIQ A;  2NT9 A;  4NK6 A;  1CZF A;  3T9G A;  1OFM A;  4OJ5 A;  3KRG A;  4W8R A;  1VBL A;  2J8I A;  3SQV A;  4XON A;  5DNS A;  2NTQ A;  2QXZ A;  4HWV A;  3P4G A;  4PMH A;  2O1D A;  2VFQ A;  4EW9 A;  4XKW A;  1QA3 A;  3N90 A;  1OGO X;  2UVE A;  3NB2 A;  1PXZ A;  4XLA A;  4XQF A;  1EA0 A; 
#chains in the Genus database with same CATH homology
 2O0W A;  3GQA A;  1BN8 A;  1AIR A;  1KCD A;  3GRH A;  4XR6 A;  1O8H A;  4Z03 A;  1O8K A;  2O17 A;  3ZSC A;  3GQ8 A;  1O8F A;  1IDK A;  4MR0 A;  4YZ0 A;  1RMG A;  1PE9 A;  4U4B A;  4YZQ A;  4W8Q A;  4XNF A;  4U49 A;  1DBO A;  4XLE A;  1O8M A;  4MXN A;  1OGM X;  3B90 A;  3UW0 A;  2ODL A;  2VJJ A;  2NTB A;  2BSP A;  1RU4 A;  1JRG A;  1NHC A;  4YZA A;  1H80 A;  2IQ7 A;  1IDJ A;  1O88 A;  1OOC A;  4XN3 A;  4C2L A;  4XMY A;  4XOT A;  4AVZ A;  4XLC A;  2VJI A;  4Z05 A;  1HG8 A;  2X6W A;  3GQ9 A;  3VSV A;  1O8G A;  1KTW A;  2O04 A;  4YEL A;  2UVF A;  2X3H A;  2Z8G A;  1GQ8 A;  1XG2 A;  1QCX A;  2NST A;  4XN0 A;  4W8T A;  1X0C A;  2O0V A;  2NT6 A;  1PLU A;  2X6X A;  4URR A;  4XOR A;  4OJP A;  2QX3 A;  4OZZ A;  4XKV A;  1EE6 A;  2VBM A;  2PEC A;  3FY3 A;  2INV A;  4OJL A;  2PYH A;  4Z06 A;  4W8S A;  3VSU A;  5C1C A;  4XOP A;  4YEJ A;  1WMR A;  2X6Y A;  3WWG A;  1O8J A;  3ZPP A;  3VMV A;  4YZX A;  1O8I A;  1JTA A;  4XL9 A;  2NZM A;  4I84 A;  1O8D A;  2NTP A;  1DBG A;  4XLF A;  1IA5 A;  1QJV A;  1IB4 A;  2PYG A;  2X85 A;  3B8Y A;  2INU A;  3B4N A;  1K5C A;  1O8L A;  3GQ7 A;  2VBK A;  3EQN A;  1BHE A;  2NSP A;  3JUR A;  5C1E A;  1RWR A;  3VST A;  2EWE A;  2QY1 A;  2VBE A;  4OJO A;  5AMV A;  3EQO A;  3SUC A;  4OJ6 A;  3LMW A;  4NK8 A;  1OFL A;  1KCC A;  4XLH A;  4XM3 A;  3VMW A;  1O8E A;  4OZY A;  2NT9 A;  4NK6 A;  1CZF A;  3T9G A;  1OFM A;  4OJ5 A;  3KRG A;  4W8R A;  1VBL A;  4XON A;  2NTQ A;  2QXZ A;  4HWV A;  4PMH A;  4EW9 A;  2O1D A;  4XKW A;  1OGO X;  2UVE A;  4XLA A;  1PXZ A;  4XQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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