1WN1A

Crystal structure of dipeptiase from pyrococcus horikoshii ot3
Total Genus 124
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
356
structure length
356
Chain Sequence
MRLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVGERLAILAVSAEGDYRFLAPSLYENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLGLDVHEEPYIGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGRRLTKAERELIIL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Pyrococcus horikoshii
publication title Crystal Structure of Dipeptiase from Pyrococcus Horikoshii OT3
rcsb
molecule keywords dipeptidase
total genus 124
structure length 356
sequence length 356
chains with identical sequence B
ec nomenclature ec 3.4.-.-:
pdb deposition date 2004-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 1wn1A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1wn1A02
1YW8A 2EVCA 2IW2A 4U76A 5FCFA 1BN5A 2EVMA 4U73A 2GU4A 4MATA 3Q6DA 2GG7A 1YW7A 4IPAA 5CDLA 4EGEA 2GG8A 1XGMA 2EA4A 4FLJA 5JI6A 3PN9A 3TB5A 5E2CA 4U6WA 2BWYA 4IKSA 3MR1A 4PNCA 4FO7A 5JFRA 2V3XA 1JAWA 3PKAA 4U71A 2GG2A 5CDVA 2BWXA 3FM3A 4KM3A 3S6BA 5CLSA 4ZWPA 4FUKA 1WN1A 2ADUA 4A6VA 4HXXA 1C24A 2BB7A 3MATA 2BHDA 1C21A 4IDYA 5FCHA 4RZZA 1YJ3A 2NQ6A 5D6FA 3IU8A 1CHMA 4IKRA 4U6CA 4ZNGA 2GA2A 2GGCA 3MX6A 4U69A 4RZYA 4U70A 1W7VA 3OVKA 3PEBA 3CB6A 1C22A 2GGBA 4U75A 1PV9A 3IL0A 3FMRA 4ZWOA 1MATA 4A6WA 2P98A 1B6AA 1C27A 2V6CA 2BHCA 1KQ0A 2V3ZA 5CDEA 2BHBA 1W2MA 4U1BA 3QOCA 1XGOA 2MATA 1KQ9A 1WL6A 2GZ5A 4B28A 4FO8A 2GU7A 3CTZA 2BWSA 4S01A 4U6EA 4U6JA 1QXZA 2B3LA 1O0XA 1R5HA 3RORA 2BWWA 2NQ7A 4IKUA 3FMQA 4QR8A 2BH3A 2GG3A 1XGSA 3PKDA 3TAVA 4Z7MA 2GTXA 1C23A 2V3YA 2OAZA 1QXYA 2OKNA 2Q92A 3O5VA 2GG5A 4S2RP 1WKMA 4FLLA 2Q93A 2HOWA 3L7GA 5CNXA 1BOAA 1QXWA 3PKBA 4U6ZA 5CIKA 4IU6A 2Q95A 2Q94A 3IU9A 4OOKA 2GG9A 2B3KA 3BIQA 1YVMA 2BHAA 2EVOA 1KP0A 4FKCA 5CE6A 4FLIA 1M35A 1XNZA 2DFIA 3CB5A 3RVAA 4PV4A 1A16A 2G6PA 2GU6A 1N51A 2BWVA 3BITA 1WL9A 3IG4A 4R60A 3I7MA 4S00A 5E5BA 2P99A 4FLKA 2ZSGA 2Q8KA 1WBQA 3OOOA 4S2TP 4ZWUA 5D6EA 3PKCA 4IECA 1Y1NA 4RGZ1 1B59A 1QZYA 2BWTA 2P9AA 2B3HA 4IF7A 3IU7A 1YW9A 2Q96A 5JHUA 3BIPA 1R5GA 3D27A 2GG0A 4JUQA 2EA2A 1WY2A 1R58A 4IKTA 1XGNA 2BN7A 2GU5A 3PKEA 1WLRA 3L24A 2BWUA
chains in the Genus database with same CATH superfamily
1YW8A 2EVCA 2IW2A 4U76A 5FCFA 1BN5A 2EVMA 4U73A 2GU4A 4MATA 3Q6DA 2GG7A 1YW7A 4IPAA 5CDLA 4EGEA 2GG8A 1XGMA 2EA4A 4FLJA 5JI6A 3PN9A 3TB5A 5E2CA 4U6WA 2BWYA 4IKSA 3MR1A 4PNCA 4FO7A 5JFRA 2V3XA 1JAWA 3PKAA 4U71A 2GG2A 5CDVA 2BWXA 3FM3A 4KM3A 3S6BA 5CLSA 4ZWPA 4FUKA 1WN1A 2ADUA 4A6VA 4HXXA 1C24A 2BB7A 3MATA 2BHDA 1C21A 4IDYA 5FCHA 4RZZA 1YJ3A 2NQ6A 5D6FA 3IU8A 1CHMA 4IKRA 4U6CA 4ZNGA 2GA2A 2GGCA 3MX6A 4U69A 4RZYA 4U70A 1W7VA 3OVKA 3PEBA 3CB6A 1C22A 2GGBA 4U75A 1PV9A 3IL0A 3FMRA 4ZWOA 1MATA 4A6WA 2P98A 1B6AA 1C27A 2V6CA 2BHCA 1KQ0A 2V3ZA 5CDEA 2BHBA 1W2MA 4U1BA 3QOCA 1XGOA 2MATA 1KQ9A 1WL6A 2GZ5A 4B28A 4FO8A 2GU7A 3CTZA 2BWSA 4S01A 4U6EA 4U6JA 1QXZA 2B3LA 1O0XA 1R5HA 3RORA 2BWWA 2NQ7A 4IKUA 3FMQA 4QR8A 2BH3A 2GG3A 1XGSA 3PKDA 3TAVA 4Z7MA 2GTXA 1C23A 2V3YA 2OAZA 1QXYA 2OKNA 2Q92A 3O5VA 2GG5A 4S2RP 1WKMA 4FLLA 2Q93A 2HOWA 3L7GA 5CNXA 1BOAA 1QXWA 3PKBA 4U6ZA 5CIKA 4IU6A 2Q95A 2Q94A 3IU9A 4OOKA 2GG9A 2B3KA 3BIQA 1YVMA 2BHAA 2EVOA 1KP0A 4FKCA 5CE6A 4FLIA 1M35A 1XNZA 2DFIA 3CB5A 3RVAA 4PV4A 1A16A 2G6PA 2GU6A 1N51A 2BWVA 3BITA 1WL9A 3IG4A 4R60A 3I7MA 4S00A 5E5BA 2P99A 4FLKA 2ZSGA 2Q8KA 1WBQA 3OOOA 4S2TP 4ZWUA 5D6EA 3PKCA 4IECA 1Y1NA 4RGZ1 1B59A 1QZYA 2BWTA 2P9AA 2B3HA 4IF7A 3IU7A 1YW9A 2Q96A 5JHUA 3BIPA 1R5GA 3D27A 2GG0A 4JUQA 2EA2A 1WY2A 1R58A 4IKTA 1XGNA 2BN7A 2GU5A 3PKEA 1WLRA 3L24A 2BWUA
chains in the Genus database with same CATH topology
1YW8A 2EVCA 2IW2A 4U76A 5FCFA 1BN5A 2EVMA 4U73A 2GU4A 4MATA 3Q6DA 2GG7A 1YW7A 4IPAA 5CDLA 4EGEA 2GG8A 1XGMA 2EA4A 4FLJA 5JI6A 3PN9A 3TB5A 5E2CA 4U6WA 2BWYA 4IKSA 3MR1A 4PNCA 4FO7A 5JFRA 2V3XA 1JAWA 3PKAA 4U71A 2GG2A 5CDVA 2BWXA 3FM3A 4KM3A 3S6BA 5CLSA 4ZWPA 4FUKA 1WN1A 2ADUA 4A6VA 4HXXA 1C24A 2BB7A 3MATA 2BHDA 1C21A 4IDYA 5FCHA 4RZZA 1YJ3A 2NQ6A 5D6FA 3IU8A 1CHMA 4IKRA 4U6CA 4ZNGA 2GA2A 2GGCA 3MX6A 4U69A 4RZYA 4U70A 1W7VA 3OVKA 3PEBA 3CB6A 1C22A 2GGBA 4U75A 1PV9A 3IL0A 3FMRA 4ZWOA 1MATA 4A6WA 2P98A 1B6AA 1C27A 2V6CA 2BHCA 1KQ0A 2V3ZA 5CDEA 2BHBA 1W2MA 4U1BA 3QOCA 1XGOA 2MATA 1KQ9A 1WL6A 2GZ5A 4B28A 4FO8A 2GU7A 3CTZA 2BWSA 4S01A 4U6EA 4U6JA 1QXZA 2B3LA 1O0XA 1R5HA 3RORA 2BWWA 2NQ7A 4IKUA 3FMQA 4QR8A 2BH3A 2GG3A 1XGSA 3PKDA 3TAVA 4Z7MA 2GTXA 1C23A 2V3YA 2OAZA 1QXYA 2OKNA 2Q92A 3O5VA 2GG5A 4S2RP 1WKMA 4FLLA 2Q93A 2HOWA 3L7GA 5CNXA 1BOAA 1QXWA 3PKBA 4U6ZA 5CIKA 4IU6A 2Q95A 2Q94A 3IU9A 4OOKA 2GG9A 2B3KA 3BIQA 1YVMA 2BHAA 2EVOA 1KP0A 4FKCA 5CE6A 4FLIA 1M35A 1XNZA 2DFIA 3CB5A 3RVAA 4PV4A 1A16A 2G6PA 2GU6A 1N51A 2BWVA 3BITA 1WL9A 3IG4A 4R60A 3I7MA 4S00A 5E5BA 2P99A 4FLKA 2ZSGA 2Q8KA 1WBQA 3OOOA 4S2TP 4ZWUA 5D6EA 3PKCA 4IECA 1Y1NA 4RGZ1 1B59A 1QZYA 2BWTA 2P9AA 2B3HA 4IF7A 3IU7A 1YW9A 2Q96A 5JHUA 3BIPA 1R5GA 3D27A 2GG0A 4JUQA 2EA2A 1WY2A 1R58A 4IKTA 1XGNA 2BN7A 2GU5A 3PKEA 1WLRA 3L24A 2BWUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YW8 A;  2EVC A;  2IW2 A;  4U76 A;  5FCF A;  1BN5 A;  2EVM A;  4U73 A;  2GU4 A;  4MAT A;  3Q6D A;  2GG7 A;  1YW7 A;  4IPA A;  5CDL A;  4EGE A;  2GG8 A;  1XGM A;  2EA4 A;  4FLJ A;  5JI6 A;  3PN9 A;  3TB5 A;  5E2C A;  4U6W A;  2BWY A;  4IKS A;  3MR1 A;  4PNC A;  4FO7 A;  5JFR A;  2V3X A;  1JAW A;  3PKA A;  4U71 A;  2GG2 A;  5CDV A;  2BWX A;  3FM3 A;  4KM3 A;  3S6B A;  5CLS A;  4ZWP A;  4FUK A;  1WN1 A;  2ADU A;  4A6V A;  4HXX A;  1C24 A;  2BB7 A;  3MAT A;  2BHD A;  1C21 A;  4IDY A;  5FCH A;  4RZZ A;  1YJ3 A;  2NQ6 A;  5D6F A;  3IU8 A;  1CHM A;  4IKR A;  4U6C A;  4ZNG A;  2GA2 A;  2GGC A;  3MX6 A;  4U69 A;  4RZY A;  4U70 A;  1W7V A;  3OVK A;  3PEB A;  3CB6 A;  1C22 A;  2GGB A;  4U75 A;  1PV9 A;  3IL0 A;  3FMR A;  4ZWO A;  1MAT A;  4A6W A;  2P98 A;  1B6A A;  1C27 A;  2V6C A;  2BHC A;  1KQ0 A;  2V3Z A;  5CDE A;  2BHB A;  1W2M A;  4U1B A;  3QOC A;  1XGO A;  2MAT A;  1KQ9 A;  1WL6 A;  2GZ5 A;  4B28 A;  4FO8 A;  2GU7 A;  3CTZ A;  2BWS A;  4S01 A;  4U6E A;  4U6J A;  1QXZ A;  2B3L A;  1O0X A;  1R5H A;  3ROR A;  2BWW A;  2NQ7 A;  4IKU A;  3FMQ A;  4QR8 A;  2BH3 A;  2GG3 A;  1XGS A;  3PKD A;  3TAV A;  4Z7M A;  2GTX A;  1C23 A;  2V3Y A;  2OAZ A;  1QXY A;  2OKN A;  2Q92 A;  3O5V A;  2GG5 A;  4S2R P;  1WKM A;  4FLL A;  2Q93 A;  2HOW A;  3L7G A;  5CNX A;  1BOA A;  1QXW A;  3PKB A;  4U6Z A;  5CIK A;  4IU6 A;  2Q95 A;  2Q94 A;  3IU9 A;  4OOK A;  2GG9 A;  2B3K A;  3BIQ A;  1YVM A;  2BHA A;  2EVO A;  1KP0 A;  4FKC A;  5CE6 A;  4FLI A;  1M35 A;  1XNZ A;  2DFI A;  3CB5 A;  3RVA A;  4PV4 A;  1A16 A;  2G6P A;  2GU6 A;  1N51 A;  2BWV A;  3BIT A;  1WL9 A;  3IG4 A;  4R60 A;  3I7M A;  4S00 A;  5E5B A;  2P99 A;  4FLK A;  2ZSG A;  2Q8K A;  1WBQ A;  3OOO A;  4S2T P;  4ZWU A;  5D6E A;  3PKC A;  4IEC A;  1Y1N A;  4RGZ 1;  1B59 A;  1QZY A;  2BWT A;  2P9A A;  2B3H A;  4IF7 A;  3IU7 A;  1YW9 A;  2Q96 A;  5JHU A;  3BIP A;  1R5G A;  3D27 A;  2GG0 A;  4JUQ A;  2EA2 A;  1WY2 A;  1R58 A;  4IKT A;  1XGN A;  2BN7 A;  2GU5 A;  3PKE A;  1WLR A;  3L24 A;  2BWU A; 
#chains in the Genus database with same CATH topology
 1YW8 A;  2EVC A;  2IW2 A;  4U76 A;  5FCF A;  1BN5 A;  2EVM A;  4U73 A;  2GU4 A;  4MAT A;  3Q6D A;  2GG7 A;  1YW7 A;  4IPA A;  5CDL A;  4EGE A;  2GG8 A;  1XGM A;  2EA4 A;  4FLJ A;  5JI6 A;  3PN9 A;  3TB5 A;  5E2C A;  4U6W A;  2BWY A;  4IKS A;  3MR1 A;  4PNC A;  4FO7 A;  5JFR A;  2V3X A;  1JAW A;  3PKA A;  4U71 A;  2GG2 A;  5CDV A;  2BWX A;  3FM3 A;  4KM3 A;  3S6B A;  5CLS A;  4ZWP A;  4FUK A;  1WN1 A;  2ADU A;  4A6V A;  4HXX A;  1C24 A;  2BB7 A;  3MAT A;  2BHD A;  1C21 A;  4IDY A;  5FCH A;  4RZZ A;  1YJ3 A;  2NQ6 A;  5D6F A;  3IU8 A;  1CHM A;  4IKR A;  4U6C A;  4ZNG A;  2GA2 A;  2GGC A;  3MX6 A;  4U69 A;  4RZY A;  4U70 A;  1W7V A;  3OVK A;  3PEB A;  3CB6 A;  1C22 A;  2GGB A;  4U75 A;  1PV9 A;  3IL0 A;  3FMR A;  4ZWO A;  1MAT A;  4A6W A;  2P98 A;  1B6A A;  1C27 A;  2V6C A;  2BHC A;  1KQ0 A;  2V3Z A;  5CDE A;  2BHB A;  1W2M A;  4U1B A;  3QOC A;  1XGO A;  2MAT A;  1KQ9 A;  1WL6 A;  2GZ5 A;  4B28 A;  4FO8 A;  2GU7 A;  3CTZ A;  2BWS A;  4S01 A;  4U6E A;  4U6J A;  1QXZ A;  2B3L A;  1O0X A;  1R5H A;  3ROR A;  2BWW A;  2NQ7 A;  4IKU A;  3FMQ A;  4QR8 A;  2BH3 A;  2GG3 A;  1XGS A;  3PKD A;  3TAV A;  4Z7M A;  2GTX A;  1C23 A;  2V3Y A;  2OAZ A;  1QXY A;  2OKN A;  2Q92 A;  3O5V A;  2GG5 A;  4S2R P;  1WKM A;  4FLL A;  2Q93 A;  2HOW A;  3L7G A;  5CNX A;  1BOA A;  1QXW A;  3PKB A;  4U6Z A;  5CIK A;  4IU6 A;  2Q95 A;  2Q94 A;  3IU9 A;  4OOK A;  2GG9 A;  2B3K A;  3BIQ A;  1YVM A;  2BHA A;  2EVO A;  1KP0 A;  4FKC A;  5CE6 A;  4FLI A;  1M35 A;  1XNZ A;  2DFI A;  3CB5 A;  3RVA A;  4PV4 A;  1A16 A;  2G6P A;  2GU6 A;  1N51 A;  2BWV A;  3BIT A;  1WL9 A;  3IG4 A;  4R60 A;  3I7M A;  4S00 A;  5E5B A;  2P99 A;  4FLK A;  2ZSG A;  2Q8K A;  1WBQ A;  3OOO A;  4S2T P;  4ZWU A;  5D6E A;  3PKC A;  4IEC A;  1Y1N A;  4RGZ 1;  1B59 A;  1QZY A;  2BWT A;  2P9A A;  2B3H A;  4IF7 A;  3IU7 A;  1YW9 A;  2Q96 A;  5JHU A;  3BIP A;  1R5G A;  3D27 A;  2GG0 A;  4JUQ A;  2EA2 A;  1WY2 A;  1R58 A;  4IKT A;  1XGN A;  2BN7 A;  2GU5 A;  3PKE A;  1WLR A;  3L24 A;  2BWU A; 
#chains in the Genus database with same CATH homology
 1YW8 A;  2EVC A;  2IW2 A;  4U76 A;  5FCF A;  1BN5 A;  2EVM A;  4U73 A;  2GU4 A;  4MAT A;  3Q6D A;  2GG7 A;  1YW7 A;  4IPA A;  5CDL A;  4EGE A;  2GG8 A;  1XGM A;  2EA4 A;  4FLJ A;  5JI6 A;  3PN9 A;  3TB5 A;  5E2C A;  4U6W A;  2BWY A;  4IKS A;  3MR1 A;  4PNC A;  4FO7 A;  5JFR A;  2V3X A;  1JAW A;  3PKA A;  4U71 A;  2GG2 A;  5CDV A;  2BWX A;  3FM3 A;  4KM3 A;  3S6B A;  5CLS A;  4ZWP A;  4FUK A;  1WN1 A;  2ADU A;  4A6V A;  4HXX A;  1C24 A;  2BB7 A;  3MAT A;  2BHD A;  1C21 A;  4IDY A;  5FCH A;  4RZZ A;  1YJ3 A;  2NQ6 A;  5D6F A;  3IU8 A;  1CHM A;  4IKR A;  4U6C A;  4ZNG A;  2GA2 A;  2GGC A;  3MX6 A;  4U69 A;  4RZY A;  4U70 A;  1W7V A;  3OVK A;  3PEB A;  3CB6 A;  1C22 A;  2GGB A;  4U75 A;  1PV9 A;  3IL0 A;  3FMR A;  4ZWO A;  1MAT A;  4A6W A;  2P98 A;  1B6A A;  1C27 A;  2V6C A;  2BHC A;  1KQ0 A;  2V3Z A;  5CDE A;  2BHB A;  1W2M A;  4U1B A;  3QOC A;  1XGO A;  2MAT A;  1KQ9 A;  1WL6 A;  2GZ5 A;  4B28 A;  4FO8 A;  2GU7 A;  3CTZ A;  2BWS A;  4S01 A;  4U6E A;  4U6J A;  1QXZ A;  2B3L A;  1O0X A;  1R5H A;  3ROR A;  2BWW A;  2NQ7 A;  4IKU A;  3FMQ A;  4QR8 A;  2BH3 A;  2GG3 A;  1XGS A;  3PKD A;  3TAV A;  4Z7M A;  2GTX A;  1C23 A;  2V3Y A;  2OAZ A;  1QXY A;  2OKN A;  2Q92 A;  3O5V A;  2GG5 A;  4S2R P;  1WKM A;  4FLL A;  2Q93 A;  2HOW A;  3L7G A;  5CNX A;  1BOA A;  1QXW A;  3PKB A;  4U6Z A;  5CIK A;  4IU6 A;  2Q95 A;  2Q94 A;  3IU9 A;  4OOK A;  2GG9 A;  2B3K A;  3BIQ A;  1YVM A;  2BHA A;  2EVO A;  1KP0 A;  4FKC A;  5CE6 A;  4FLI A;  1M35 A;  1XNZ A;  2DFI A;  3CB5 A;  3RVA A;  4PV4 A;  1A16 A;  2G6P A;  2GU6 A;  1N51 A;  2BWV A;  3BIT A;  1WL9 A;  3IG4 A;  4R60 A;  3I7M A;  4S00 A;  5E5B A;  2P99 A;  4FLK A;  2ZSG A;  2Q8K A;  1WBQ A;  3OOO A;  4S2T P;  4ZWU A;  5D6E A;  3PKC A;  4IEC A;  1Y1N A;  4RGZ 1;  1B59 A;  1QZY A;  2BWT A;  2P9A A;  2B3H A;  4IF7 A;  3IU7 A;  1YW9 A;  2Q96 A;  5JHU A;  3BIP A;  1R5G A;  3D27 A;  2GG0 A;  4JUQ A;  2EA2 A;  1WY2 A;  1R58 A;  4IKT A;  1XGN A;  2BN7 A;  2GU5 A;  3PKE A;  1WLR A;  3L24 A;  2BWU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...