1WN1A

Crystal structure of dipeptiase from pyrococcus horikoshii ot3
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
356
structure length
356
Chain Sequence
b'MRLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVGERLAILAVSAEGDYRFLAPSLYENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLGLDVHEEPYIGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGRRLTKAERELIIL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Dipeptiase from Pyrococcus Horikoshii OT3
rcsb
molecule keywords dipeptidase
source organism Pyrococcus horikoshii
molecule tags Hydrolase
total genus 124
structure length 356
sequence length 356
chains with identical sequence B
ec nomenclature ec 3.4.-.-:
pdb deposition date 2004-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 1wn1A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 1wn1A02
4A6VA 4FLJA 3PN9A 4ZWUA 1QXZA 4IU6A 3PEBA 1WN1A 4FLLA 4U73A 1MATA 4JUQA 2BWYA 2GU4A 2GU5A 3S6BA 2Q94A 2IW2A 1R5GA 2GU7A 1YW9A 2OAZA 1PV9A 3BIPA 1KQ0A 4S2TP 4B28A 2BWTA 1XGMA 2GG8A 3PKDA 2BWSA 2BWVA 2ADUA 2GG2A 4U6CA 3BIQA 1KQ9A 4FO7A 3O5VA 5D6EA 5JHUA 3L24A 4EGEA 2GG7A 1O0XA 4ZNGA 5FCFA 2BHBA 3CB6A 4RGZ1 3PKBA 2BHAA 1WY2A 3FMQA 4IKSA 1YVMA 1C22A 4IKRA 5CE6A 4IKUA 4IF7A 2B3KA 2GTXA 1WLRA 2HOWA 2DFIA 1CHMA 2EVMA 1WL9A 4S2RP 2BH3A 3FM3A 4OOKA 5E5BA 4S01A 2BHCA 3CB5A 5D6FA 4FUKA 4U6JA 1WL6A 5FCHA 3OVKA 2EA4A 2MATA 1W7VA 2V3YA 2GU6A 2BHDA 2GG3A 3IL0A 1W2MA 5CNXA 1JAWA 1BN5A 2Q92A 2EVOA 4U76A 4R60A 2P98A 4RZYA 2BB7A 4RZZA 5CDEA 3TAVA 2OKNA 5JI6A 5JFRA 1XNZA 1Y1NA 2BN7A 2Q8KA 4HXXA 3I7MA 2BWUA 5CDLA 2NQ6A 3TB5A 3RORA 4ZWPA 2BWWA 4U6EA 3OOOA 4U6WA 2Q96A 4PV4A 3L7GA 1R5HA 3Q6DA 2P99A 2P9AA 4Z7MA 1YW8A 2G6PA 1B59A 3MX6A 1XGSA 1QXWA 3FMRA 3PKAA 1BOAA 3RVAA 4IPAA 3MATA 2GA2A 5CDVA 5E2CA 2V3ZA 3MR1A 4ZWOA 1C24A 1YW7A 1M35A 2NQ7A 1KP0A 2Q93A 2GG5A 3PKCA 4A6WA 4S00A 2GZ5A 4QR8A 1B6AA 4U70A 3BITA 4IDYA 1R58A 4IECA 2B3LA 4FO8A 1C21A 4KM3A 3IG4A 1C23A 4U1BA 3QOCA 1XGOA 2V6CA 3IU7A 5CIKA 4MATA 1WBQA 3IU8A 1QXYA 2V3XA 3PKEA 4FKCA 1WKMA 4U69A 4U75A 4IKTA 2GG9A 2GG0A 2GGCA 1C27A 1XGNA 2Q95A 2EVCA 4FLKA 2EA2A 4FLIA 1QZYA 4U6ZA 1A16A 1YJ3A 2B3HA 1N51A 3D27A 3IU9A 4U71A 2GGBA 2BWXA 4PNCA 5CLSA 2ZSGA 3CTZA
chains in the Genus database with same CATH superfamily
4A6VA 4FLJA 3PN9A 4ZWUA 1QXZA 4IU6A 3PEBA 1WN1A 4FLLA 4U73A 1MATA 4JUQA 2BWYA 2GU4A 2GU5A 3S6BA 2Q94A 2IW2A 1R5GA 2GU7A 1YW9A 2OAZA 1PV9A 3BIPA 1KQ0A 4S2TP 4B28A 2BWTA 1XGMA 2GG8A 3PKDA 2BWSA 2BWVA 2ADUA 2GG2A 4U6CA 3BIQA 1KQ9A 4FO7A 3O5VA 5D6EA 5JHUA 3L24A 4EGEA 2GG7A 1O0XA 4ZNGA 5FCFA 2BHBA 3CB6A 4RGZ1 3PKBA 2BHAA 1WY2A 3FMQA 4IKSA 1YVMA 1C22A 4IKRA 5CE6A 4IKUA 4IF7A 2B3KA 2GTXA 1WLRA 2HOWA 2DFIA 1CHMA 2EVMA 1WL9A 4S2RP 2BH3A 3FM3A 4OOKA 5E5BA 4S01A 2BHCA 3CB5A 5D6FA 4FUKA 4U6JA 1WL6A 5FCHA 3OVKA 2EA4A 2MATA 1W7VA 2V3YA 2GU6A 2BHDA 2GG3A 3IL0A 1W2MA 5CNXA 1JAWA 1BN5A 2Q92A 2EVOA 4U76A 4R60A 2P98A 4RZYA 2BB7A 4RZZA 5CDEA 3TAVA 2OKNA 5JI6A 5JFRA 1XNZA 1Y1NA 2BN7A 2Q8KA 4HXXA 3I7MA 2BWUA 5CDLA 2NQ6A 3TB5A 3RORA 4ZWPA 2BWWA 4U6EA 3OOOA 4U6WA 2Q96A 4PV4A 3L7GA 1R5HA 3Q6DA 2P99A 2P9AA 4Z7MA 1YW8A 2G6PA 1B59A 3MX6A 1XGSA 1QXWA 3FMRA 3PKAA 1BOAA 3RVAA 4IPAA 3MATA 2GA2A 5CDVA 5E2CA 2V3ZA 3MR1A 4ZWOA 1C24A 1YW7A 1M35A 2NQ7A 1KP0A 2Q93A 2GG5A 3PKCA 4A6WA 4S00A 2GZ5A 4QR8A 1B6AA 4U70A 3BITA 4IDYA 1R58A 4IECA 2B3LA 4FO8A 1C21A 4KM3A 3IG4A 1C23A 4U1BA 3QOCA 1XGOA 2V6CA 3IU7A 5CIKA 4MATA 1WBQA 3IU8A 1QXYA 2V3XA 3PKEA 4FKCA 1WKMA 4U69A 4U75A 4IKTA 2GG9A 2GG0A 2GGCA 1C27A 1XGNA 2Q95A 2EVCA 4FLKA 2EA2A 4FLIA 1QZYA 4U6ZA 1A16A 1YJ3A 2B3HA 1N51A 3D27A 3IU9A 4U71A 2GGBA 2BWXA 4PNCA 5CLSA 2ZSGA 3CTZA
chains in the Genus database with same CATH topology
4A6VA 4FLJA 3PN9A 4ZWUA 1QXZA 4IU6A 3PEBA 1WN1A 4FLLA 4U73A 1MATA 4JUQA 2BWYA 2GU4A 2GU5A 3S6BA 2Q94A 2IW2A 1R5GA 2GU7A 1YW9A 2OAZA 1PV9A 3BIPA 1KQ0A 4S2TP 4B28A 2BWTA 1XGMA 2GG8A 3PKDA 2BWSA 2BWVA 2ADUA 2GG2A 4U6CA 3BIQA 1KQ9A 4FO7A 3O5VA 5D6EA 5JHUA 3L24A 4EGEA 2GG7A 1O0XA 4ZNGA 5FCFA 2BHBA 3CB6A 4RGZ1 3PKBA 2BHAA 1WY2A 3FMQA 4IKSA 1YVMA 1C22A 4IKRA 5CE6A 4IKUA 4IF7A 2B3KA 2GTXA 1WLRA 2HOWA 2DFIA 1CHMA 2EVMA 1WL9A 4S2RP 2BH3A 3FM3A 4OOKA 5E5BA 4S01A 2BHCA 3CB5A 5D6FA 4FUKA 4U6JA 1WL6A 5FCHA 3OVKA 2EA4A 2MATA 1W7VA 2V3YA 2GU6A 2BHDA 2GG3A 3IL0A 1W2MA 5CNXA 1JAWA 1BN5A 2Q92A 2EVOA 4U76A 4R60A 2P98A 4RZYA 2BB7A 4RZZA 5CDEA 3TAVA 2OKNA 5JI6A 5JFRA 1XNZA 1Y1NA 2BN7A 2Q8KA 4HXXA 3I7MA 2BWUA 5CDLA 2NQ6A 3TB5A 3RORA 4ZWPA 2BWWA 4U6EA 3OOOA 4U6WA 2Q96A 4PV4A 3L7GA 1R5HA 3Q6DA 2P99A 2P9AA 4Z7MA 1YW8A 2G6PA 1B59A 3MX6A 1XGSA 1QXWA 3FMRA 3PKAA 1BOAA 3RVAA 4IPAA 3MATA 2GA2A 5CDVA 5E2CA 2V3ZA 3MR1A 4ZWOA 1C24A 1YW7A 1M35A 2NQ7A 1KP0A 2Q93A 2GG5A 3PKCA 4A6WA 4S00A 2GZ5A 4QR8A 1B6AA 4U70A 3BITA 4IDYA 1R58A 4IECA 2B3LA 4FO8A 1C21A 4KM3A 3IG4A 1C23A 4U1BA 3QOCA 1XGOA 2V6CA 3IU7A 5CIKA 4MATA 1WBQA 3IU8A 1QXYA 2V3XA 3PKEA 4FKCA 1WKMA 4U69A 4U75A 4IKTA 2GG9A 2GG0A 2GGCA 1C27A 1XGNA 2Q95A 2EVCA 4FLKA 2EA2A 4FLIA 1QZYA 4U6ZA 1A16A 1YJ3A 2B3HA 1N51A 3D27A 3IU9A 4U71A 2GGBA 2BWXA 4PNCA 5CLSA 2ZSGA 3CTZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A6V A;  4FLJ A;  3PN9 A;  4ZWU A;  1QXZ A;  4IU6 A;  3PEB A;  1WN1 A;  4FLL A;  4U73 A;  1MAT A;  4JUQ A;  2BWY A;  2GU4 A;  2GU5 A;  3S6B A;  2Q94 A;  2IW2 A;  1R5G A;  2GU7 A;  1YW9 A;  2OAZ A;  1PV9 A;  3BIP A;  1KQ0 A;  4S2T P;  4B28 A;  2BWT A;  1XGM A;  2GG8 A;  3PKD A;  2BWS A;  2BWV A;  2ADU A;  2GG2 A;  4U6C A;  3BIQ A;  1KQ9 A;  4FO7 A;  3O5V A;  5D6E A;  5JHU A;  3L24 A;  4EGE A;  2GG7 A;  1O0X A;  4ZNG A;  5FCF A;  2BHB A;  3CB6 A;  4RGZ 1;  3PKB A;  2BHA A;  1WY2 A;  3FMQ A;  4IKS A;  1YVM A;  1C22 A;  4IKR A;  5CE6 A;  4IKU A;  4IF7 A;  2B3K A;  2GTX A;  1WLR A;  2HOW A;  2DFI A;  1CHM A;  2EVM A;  1WL9 A;  4S2R P;  2BH3 A;  3FM3 A;  4OOK A;  5E5B A;  4S01 A;  2BHC A;  3CB5 A;  5D6F A;  4FUK A;  4U6J A;  1WL6 A;  5FCH A;  3OVK A;  2EA4 A;  2MAT A;  1W7V A;  2V3Y A;  2GU6 A;  2BHD A;  2GG3 A;  3IL0 A;  1W2M A;  5CNX A;  1JAW A;  1BN5 A;  2Q92 A;  2EVO A;  4U76 A;  4R60 A;  2P98 A;  4RZY A;  2BB7 A;  4RZZ A;  5CDE A;  3TAV A;  2OKN A;  5JI6 A;  5JFR A;  1XNZ A;  1Y1N A;  2BN7 A;  2Q8K A;  4HXX A;  3I7M A;  2BWU A;  5CDL A;  2NQ6 A;  3TB5 A;  3ROR A;  4ZWP A;  2BWW A;  4U6E A;  3OOO A;  4U6W A;  2Q96 A;  4PV4 A;  3L7G A;  1R5H A;  3Q6D A;  2P99 A;  2P9A A;  4Z7M A;  1YW8 A;  2G6P A;  1B59 A;  3MX6 A;  1XGS A;  1QXW A;  3FMR A;  3PKA A;  1BOA A;  3RVA A;  4IPA A;  3MAT A;  2GA2 A;  5CDV A;  5E2C A;  2V3Z A;  3MR1 A;  4ZWO A;  1C24 A;  1YW7 A;  1M35 A;  2NQ7 A;  1KP0 A;  2Q93 A;  2GG5 A;  3PKC A;  4A6W A;  4S00 A;  2GZ5 A;  4QR8 A;  1B6A A;  4U70 A;  3BIT A;  4IDY A;  1R58 A;  4IEC A;  2B3L A;  4FO8 A;  1C21 A;  4KM3 A;  3IG4 A;  1C23 A;  4U1B A;  3QOC A;  1XGO A;  2V6C A;  3IU7 A;  5CIK A;  4MAT A;  1WBQ A;  3IU8 A;  1QXY A;  2V3X A;  3PKE A;  4FKC A;  1WKM A;  4U69 A;  4U75 A;  4IKT A;  2GG9 A;  2GG0 A;  2GGC A;  1C27 A;  1XGN A;  2Q95 A;  2EVC A;  4FLK A;  2EA2 A;  4FLI A;  1QZY A;  4U6Z A;  1A16 A;  1YJ3 A;  2B3H A;  1N51 A;  3D27 A;  3IU9 A;  4U71 A;  2GGB A;  2BWX A;  4PNC A;  5CLS A;  2ZSG A;  3CTZ A; 
#chains in the Genus database with same CATH topology
 4A6V A;  4FLJ A;  3PN9 A;  4ZWU A;  1QXZ A;  4IU6 A;  3PEB A;  1WN1 A;  4FLL A;  4U73 A;  1MAT A;  4JUQ A;  2BWY A;  2GU4 A;  2GU5 A;  3S6B A;  2Q94 A;  2IW2 A;  1R5G A;  2GU7 A;  1YW9 A;  2OAZ A;  1PV9 A;  3BIP A;  1KQ0 A;  4S2T P;  4B28 A;  2BWT A;  1XGM A;  2GG8 A;  3PKD A;  2BWS A;  2BWV A;  2ADU A;  2GG2 A;  4U6C A;  3BIQ A;  1KQ9 A;  4FO7 A;  3O5V A;  5D6E A;  5JHU A;  3L24 A;  4EGE A;  2GG7 A;  1O0X A;  4ZNG A;  5FCF A;  2BHB A;  3CB6 A;  4RGZ 1;  3PKB A;  2BHA A;  1WY2 A;  3FMQ A;  4IKS A;  1YVM A;  1C22 A;  4IKR A;  5CE6 A;  4IKU A;  4IF7 A;  2B3K A;  2GTX A;  1WLR A;  2HOW A;  2DFI A;  1CHM A;  2EVM A;  1WL9 A;  4S2R P;  2BH3 A;  3FM3 A;  4OOK A;  5E5B A;  4S01 A;  2BHC A;  3CB5 A;  5D6F A;  4FUK A;  4U6J A;  1WL6 A;  5FCH A;  3OVK A;  2EA4 A;  2MAT A;  1W7V A;  2V3Y A;  2GU6 A;  2BHD A;  2GG3 A;  3IL0 A;  1W2M A;  5CNX A;  1JAW A;  1BN5 A;  2Q92 A;  2EVO A;  4U76 A;  4R60 A;  2P98 A;  4RZY A;  2BB7 A;  4RZZ A;  5CDE A;  3TAV A;  2OKN A;  5JI6 A;  5JFR A;  1XNZ A;  1Y1N A;  2BN7 A;  2Q8K A;  4HXX A;  3I7M A;  2BWU A;  5CDL A;  2NQ6 A;  3TB5 A;  3ROR A;  4ZWP A;  2BWW A;  4U6E A;  3OOO A;  4U6W A;  2Q96 A;  4PV4 A;  3L7G A;  1R5H A;  3Q6D A;  2P99 A;  2P9A A;  4Z7M A;  1YW8 A;  2G6P A;  1B59 A;  3MX6 A;  1XGS A;  1QXW A;  3FMR A;  3PKA A;  1BOA A;  3RVA A;  4IPA A;  3MAT A;  2GA2 A;  5CDV A;  5E2C A;  2V3Z A;  3MR1 A;  4ZWO A;  1C24 A;  1YW7 A;  1M35 A;  2NQ7 A;  1KP0 A;  2Q93 A;  2GG5 A;  3PKC A;  4A6W A;  4S00 A;  2GZ5 A;  4QR8 A;  1B6A A;  4U70 A;  3BIT A;  4IDY A;  1R58 A;  4IEC A;  2B3L A;  4FO8 A;  1C21 A;  4KM3 A;  3IG4 A;  1C23 A;  4U1B A;  3QOC A;  1XGO A;  2V6C A;  3IU7 A;  5CIK A;  4MAT A;  1WBQ A;  3IU8 A;  1QXY A;  2V3X A;  3PKE A;  4FKC A;  1WKM A;  4U69 A;  4U75 A;  4IKT A;  2GG9 A;  2GG0 A;  2GGC A;  1C27 A;  1XGN A;  2Q95 A;  2EVC A;  4FLK A;  2EA2 A;  4FLI A;  1QZY A;  4U6Z A;  1A16 A;  1YJ3 A;  2B3H A;  1N51 A;  3D27 A;  3IU9 A;  4U71 A;  2GGB A;  2BWX A;  4PNC A;  5CLS A;  2ZSG A;  3CTZ A; 
#chains in the Genus database with same CATH homology
 4A6V A;  4FLJ A;  3PN9 A;  4ZWU A;  1QXZ A;  4IU6 A;  3PEB A;  1WN1 A;  4FLL A;  4U73 A;  1MAT A;  4JUQ A;  2BWY A;  2GU4 A;  2GU5 A;  3S6B A;  2Q94 A;  2IW2 A;  1R5G A;  2GU7 A;  1YW9 A;  2OAZ A;  1PV9 A;  3BIP A;  1KQ0 A;  4S2T P;  4B28 A;  2BWT A;  1XGM A;  2GG8 A;  3PKD A;  2BWS A;  2BWV A;  2ADU A;  2GG2 A;  4U6C A;  3BIQ A;  1KQ9 A;  4FO7 A;  3O5V A;  5D6E A;  5JHU A;  3L24 A;  4EGE A;  2GG7 A;  1O0X A;  4ZNG A;  5FCF A;  2BHB A;  3CB6 A;  4RGZ 1;  3PKB A;  2BHA A;  1WY2 A;  3FMQ A;  4IKS A;  1YVM A;  1C22 A;  4IKR A;  5CE6 A;  4IKU A;  4IF7 A;  2B3K A;  2GTX A;  1WLR A;  2HOW A;  2DFI A;  1CHM A;  2EVM A;  1WL9 A;  4S2R P;  2BH3 A;  3FM3 A;  4OOK A;  5E5B A;  4S01 A;  2BHC A;  3CB5 A;  5D6F A;  4FUK A;  4U6J A;  1WL6 A;  5FCH A;  3OVK A;  2EA4 A;  2MAT A;  1W7V A;  2V3Y A;  2GU6 A;  2BHD A;  2GG3 A;  3IL0 A;  1W2M A;  5CNX A;  1JAW A;  1BN5 A;  2Q92 A;  2EVO A;  4U76 A;  4R60 A;  2P98 A;  4RZY A;  2BB7 A;  4RZZ A;  5CDE A;  3TAV A;  2OKN A;  5JI6 A;  5JFR A;  1XNZ A;  1Y1N A;  2BN7 A;  2Q8K A;  4HXX A;  3I7M A;  2BWU A;  5CDL A;  2NQ6 A;  3TB5 A;  3ROR A;  4ZWP A;  2BWW A;  4U6E A;  3OOO A;  4U6W A;  2Q96 A;  4PV4 A;  3L7G A;  1R5H A;  3Q6D A;  2P99 A;  2P9A A;  4Z7M A;  1YW8 A;  2G6P A;  1B59 A;  3MX6 A;  1XGS A;  1QXW A;  3FMR A;  3PKA A;  1BOA A;  3RVA A;  4IPA A;  3MAT A;  2GA2 A;  5CDV A;  5E2C A;  2V3Z A;  3MR1 A;  4ZWO A;  1C24 A;  1YW7 A;  1M35 A;  2NQ7 A;  1KP0 A;  2Q93 A;  2GG5 A;  3PKC A;  4A6W A;  4S00 A;  2GZ5 A;  4QR8 A;  1B6A A;  4U70 A;  3BIT A;  4IDY A;  1R58 A;  4IEC A;  2B3L A;  4FO8 A;  1C21 A;  4KM3 A;  3IG4 A;  1C23 A;  4U1B A;  3QOC A;  1XGO A;  2V6C A;  3IU7 A;  5CIK A;  4MAT A;  1WBQ A;  3IU8 A;  1QXY A;  2V3X A;  3PKE A;  4FKC A;  1WKM A;  4U69 A;  4U75 A;  4IKT A;  2GG9 A;  2GG0 A;  2GGC A;  1C27 A;  1XGN A;  2Q95 A;  2EVC A;  4FLK A;  2EA2 A;  4FLI A;  1QZY A;  4U6Z A;  1A16 A;  1YJ3 A;  2B3H A;  1N51 A;  3D27 A;  3IU9 A;  4U71 A;  2GGB A;  2BWX A;  4PNC A;  5CLS A;  2ZSG A;  3CTZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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