1WNGA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1wngA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1wngA01
2EHLA 2P6LA 2QBUA 2CBFA 2EK2A 2E8RA 2YBQA 2DXXA 2E7RA 2P6IA 1CBFA 2EL0A 2OWGA 2EH5A 2OWKA 2E8QA 2EN5A 2PCHA 1WYZA 2EKAA 2ZVBA 1VE2A 2HUQA 2BB3A 2EL1A 2EK3A 2OWFA 2ED5A 2HUVA 2EMRA 2DV5A 2PCAA 2E0NA 2EJZA 1WDEA 2ZVCA 2P9DA 1V9AA 2DV3A 2EHCA 3ND1A 2EH4A 2EL3A 2PB5A 2PB6A 3NEIA 2Z6RA 2NPNA 3FQ6A 2EMUA 2PCGA 2E07A 2P6DA 1VHVA 2E16A 2E4RA 5HW4A 2OWUA 2DXWA 2P5FA 1WNGA 2EL2A 2E8HA 2E4NA 2EEQA 2P5CA 2PCKA 2DSIA 2ENIA 4E16A 3I4TA 2HUTA 2EK4A 1PJTA 2DEKA 3KWPA 2PB4A 2ED3A 2DSHA 2EGBA 2HR8A 2EGSA 2HUXA 2DSGA 2EJKA 2EH2A 3FFYA 1VA0A 2ELDA 2P2XA 3NDCA 2E8SA 2EGLA 3NUTA 3HH1A 2PCIA 2PCMA 2DXVA 1S4DA 2EK7A 2E15A 2OWVA 2ELEA 2E08A 2DV7A 1VCEA 2YBOA 1PJQA 2E17A 2P6KA 2DV4A 2EJJA 2E0KA 1PJSA
chains in the Genus database with same CATH superfamily
2EHLA 2P6LA 2QBUA 2CBFA 3ZGLA 3TIXB 2EK2A 2E8RA 2YBQA 2DXXA 2E7RA 2P6IA 1CBFA 2EL0A 2OWGA 3KE8A 3UWMA 2EH5A 2OWKA 3LMMA 3SZLA 3T0GA 3URKA 3KEMA 2E8QA 2EN5A 2PCHA 1WYZA 3ZGNA 2EKAA 2ZVBA 3T0FA 1VE2A 2HUQA 2BB3A 2EL1A 3UTCA 2EK3A 2OWFA 3SZUA 2ED5A 2KYYA 2HUVA 3DNFA 2EMRA 3UTDA 2DV5A 3UV7A 2PCAA 2E0NA 2EJZA 1WDEA 2ZVCA 2P9DA 1V9AA 2DV3A 4EB3A 2EHCA 3ND1A 2EH4A 2EL3A 2PB5A 2PB6A 3KELA 3NEIA 2Z6RA 2NPNA 3FQ6A 3F7TA 2EMUA 2PCGA 4H4EA 2E07A 2P6DA 1VHVA 2E16A 2E4RA 5HW4A 2OWUA 2DXWA 2P5FA 1WNGA 2EL2A 4H4DA 2E8HA 2E4NA 2EEQA 2P5CA 4MUYA 2PCKA 2DSIA 2ENIA 4E16A 3I4TA 2HUTA 2EK4A 1PJTA 2DEKA 3KWPA 2PB4A 3UV6A 2ED3A 2DSHA 2EGBA 2HR8A 2EGSA 2HUXA 3UV3A 2DSGA 2EJKA 2EH2A 3FFYA 3SZOA 1VA0A 2ELDA 2P2XA 4MV0A 4MV5A 4MUXA 3NDCA 2E8SA 2EGLA 3KE9A 3KEFA 4N7BA 3NUTA 3HH1A 2PCIA 2PCMA 2DXVA 1S4DA 2EK7A 2E15A 2OWVA 2ELEA 2E08A 4H4CA 2DV7A 1VCEA 2YBOA 1PJQA 2E17A 2P6KA 2DV4A 2EJJA 2E0KA 1PJSA
chains in the Genus database with same CATH topology
2EHLA 2P6LA 2QBUA 2CBFA 3ZGLA 3TIXB 2EK2A 2E8RA 2YBQA 2DXXA 2E7RA 2P6IA 1CBFA 2EL0A 2OWGA 3KE8A 3UWMA 2EH5A 2OWKA 3LMMA 3SZLA 3T0GA 3URKA 3KEMA 2E8QA 2EN5A 2PCHA 1WYZA 3ZGNA 2EKAA 2ZVBA 3T0FA 1VE2A 2HUQA 2BB3A 2EL1A 3UTCA 2EK3A 2OWFA 3SZUA 2ED5A 2KYYA 2HUVA 3DNFA 2EMRA 3UTDA 2DV5A 3UV7A 2PCAA 2E0NA 2EJZA 1WDEA 2ZVCA 2P9DA 1V9AA 2DV3A 4EB3A 2EHCA 3ND1A 2EH4A 2EL3A 2PB5A 2PB6A 3KELA 3NEIA 2Z6RA 2NPNA 3FQ6A 3F7TA 2EMUA 2PCGA 4H4EA 2E07A 2P6DA 1VHVA 2E16A 2E4RA 5HW4A 2OWUA 2DXWA 2P5FA 1WNGA 2EL2A 4H4DA 2E8HA 2E4NA 2EEQA 2P5CA 4MUYA 2PCKA 2DSIA 2ENIA 4E16A 3I4TA 2HUTA 2EK4A 1PJTA 2DEKA 3KWPA 2PB4A 3UV6A 2ED3A 2DSHA 2EGBA 2HR8A 2EGSA 2HUXA 3UV3A 2DSGA 2EJKA 2EH2A 3FFYA 3SZOA 1VA0A 2ELDA 2P2XA 4MV0A 4MV5A 4MUXA 3NDCA 2E8SA 2EGLA 3KE9A 3KEFA 4N7BA 3NUTA 3HH1A 2PCIA 2PCMA 2DXVA 1S4DA 2EK7A 2E15A 2OWVA 2ELEA 2E08A 4H4CA 2DV7A 1VCEA 2YBOA 1PJQA 2E17A 2P6KA 2DV4A 2EJJA 2E0KA 1PJSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EHL A;  2P6L A;  2QBU A;  2CBF A;  2EK2 A;  2E8R A;  2YBQ A;  2DXX A;  2E7R A;  2P6I A;  1CBF A;  2EL0 A;  2OWG A;  2EH5 A;  2OWK A;  2E8Q A;  2EN5 A;  2PCH A;  1WYZ A;  2EKA A;  2ZVB A;  1VE2 A;  2HUQ A;  2BB3 A;  2EL1 A;  2EK3 A;  2OWF A;  2ED5 A;  2HUV A;  2EMR A;  2DV5 A;  2PCA A;  2E0N A;  2EJZ A;  1WDE A;  2ZVC A;  2P9D A;  1V9A A;  2DV3 A;  2EHC A;  3ND1 A;  2EH4 A;  2EL3 A;  2PB5 A;  2PB6 A;  3NEI A;  2Z6R A;  2NPN A;  3FQ6 A;  2EMU A;  2PCG A;  2E07 A;  2P6D A;  1VHV A;  2E16 A;  2E4R A;  5HW4 A;  2OWU A;  2DXW A;  2P5F A;  1WNG A;  2EL2 A;  2E8H A;  2E4N A;  2EEQ A;  2P5C A;  2PCK A;  2DSI A;  2ENI A;  4E16 A;  3I4T A;  2HUT A;  2EK4 A;  1PJT A;  2DEK A;  3KWP A;  2PB4 A;  2ED3 A;  2DSH A;  2EGB A;  2HR8 A;  2EGS A;  2HUX A;  2DSG A;  2EJK A;  2EH2 A;  3FFY A;  1VA0 A;  2ELD A;  2P2X A;  3NDC A;  2E8S A;  2EGL A;  3NUT A;  3HH1 A;  2PCI A;  2PCM A;  2DXV A;  1S4D A;  2EK7 A;  2E15 A;  2OWV A;  2ELE A;  2E08 A;  2DV7 A;  1VCE A;  2YBO A;  1PJQ A;  2E17 A;  2P6K A;  2DV4 A;  2EJJ A;  2E0K A;  1PJS A; 
#chains in the Genus database with same CATH topology
 2EHL A;  2P6L A;  2QBU A;  2CBF A;  3ZGL A;  3TIX B;  2EK2 A;  2E8R A;  2YBQ A;  2DXX A;  2E7R A;  2P6I A;  1CBF A;  2EL0 A;  2OWG A;  3KE8 A;  3UWM A;  2EH5 A;  2OWK A;  3LMM A;  3SZL A;  3T0G A;  3URK A;  3KEM A;  2E8Q A;  2EN5 A;  2PCH A;  1WYZ A;  3ZGN A;  2EKA A;  2ZVB A;  3T0F A;  1VE2 A;  2HUQ A;  2BB3 A;  2EL1 A;  3UTC A;  2EK3 A;  2OWF A;  3SZU A;  2ED5 A;  2KYY A;  2HUV A;  3DNF A;  2EMR A;  3UTD A;  2DV5 A;  3UV7 A;  2PCA A;  2E0N A;  2EJZ A;  1WDE A;  2ZVC A;  2P9D A;  1V9A A;  2DV3 A;  4EB3 A;  2EHC A;  3ND1 A;  2EH4 A;  2EL3 A;  2PB5 A;  2PB6 A;  3KEL A;  3NEI A;  2Z6R A;  2NPN A;  3FQ6 A;  3F7T A;  2EMU A;  2PCG A;  4H4E A;  2E07 A;  2P6D A;  1VHV A;  2E16 A;  2E4R A;  5HW4 A;  2OWU A;  2DXW A;  2P5F A;  1WNG A;  2EL2 A;  4H4D A;  2E8H A;  2E4N A;  2EEQ A;  2P5C A;  4MUY A;  2PCK A;  2DSI A;  2ENI A;  4E16 A;  3I4T A;  2HUT A;  2EK4 A;  1PJT A;  2DEK A;  3KWP A;  2PB4 A;  3UV6 A;  2ED3 A;  2DSH A;  2EGB A;  2HR8 A;  2EGS A;  2HUX A;  3UV3 A;  2DSG A;  2EJK A;  2EH2 A;  3FFY A;  3SZO A;  1VA0 A;  2ELD A;  2P2X A;  4MV0 A;  4MV5 A;  4MUX A;  3NDC A;  2E8S A;  2EGL A;  3KE9 A;  3KEF A;  4N7B A;  3NUT A;  3HH1 A;  2PCI A;  2PCM A;  2DXV A;  1S4D A;  2EK7 A;  2E15 A;  2OWV A;  2ELE A;  2E08 A;  4H4C A;  2DV7 A;  1VCE A;  2YBO A;  1PJQ A;  2E17 A;  2P6K A;  2DV4 A;  2EJJ A;  2E0K A;  1PJS A; 
#chains in the Genus database with same CATH homology
 2EHL A;  2P6L A;  2QBU A;  2CBF A;  3ZGL A;  3TIX B;  2EK2 A;  2E8R A;  2YBQ A;  2DXX A;  2E7R A;  2P6I A;  1CBF A;  2EL0 A;  2OWG A;  3KE8 A;  3UWM A;  2EH5 A;  2OWK A;  3LMM A;  3SZL A;  3T0G A;  3URK A;  3KEM A;  2E8Q A;  2EN5 A;  2PCH A;  1WYZ A;  3ZGN A;  2EKA A;  2ZVB A;  3T0F A;  1VE2 A;  2HUQ A;  2BB3 A;  2EL1 A;  3UTC A;  2EK3 A;  2OWF A;  3SZU A;  2ED5 A;  2KYY A;  2HUV A;  3DNF A;  2EMR A;  3UTD A;  2DV5 A;  3UV7 A;  2PCA A;  2E0N A;  2EJZ A;  1WDE A;  2ZVC A;  2P9D A;  1V9A A;  2DV3 A;  4EB3 A;  2EHC A;  3ND1 A;  2EH4 A;  2EL3 A;  2PB5 A;  2PB6 A;  3KEL A;  3NEI A;  2Z6R A;  2NPN A;  3FQ6 A;  3F7T A;  2EMU A;  2PCG A;  4H4E A;  2E07 A;  2P6D A;  1VHV A;  2E16 A;  2E4R A;  5HW4 A;  2OWU A;  2DXW A;  2P5F A;  1WNG A;  2EL2 A;  4H4D A;  2E8H A;  2E4N A;  2EEQ A;  2P5C A;  4MUY A;  2PCK A;  2DSI A;  2ENI A;  4E16 A;  3I4T A;  2HUT A;  2EK4 A;  1PJT A;  2DEK A;  3KWP A;  2PB4 A;  3UV6 A;  2ED3 A;  2DSH A;  2EGB A;  2HR8 A;  2EGS A;  2HUX A;  3UV3 A;  2DSG A;  2EJK A;  2EH2 A;  3FFY A;  3SZO A;  1VA0 A;  2ELD A;  2P2X A;  4MV0 A;  4MV5 A;  4MUX A;  3NDC A;  2E8S A;  2EGL A;  3KE9 A;  3KEF A;  4N7B A;  3NUT A;  3HH1 A;  2PCI A;  2PCM A;  2DXV A;  1S4D A;  2EK7 A;  2E15 A;  2OWV A;  2ELE A;  2E08 A;  4H4C A;  2DV7 A;  1VCE A;  2YBO A;  1PJQ A;  2E17 A;  2P6K A;  2DV4 A;  2EJJ A;  2E0K A;  1PJS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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