1WNGA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
pubmed doi rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2004-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1wngA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1wngA01
2E8HA 2EGBA 2DSGA 2CBFA 2P6KA 3FFYA 3NDCA 2E4NA 2E7RA 2P6DA 2EJZA 1V9AA 2HUXA 2PCKA 2EHLA 1WDEA 1S4DA 2ELEA 2EMRA 2P5FA 2E16A 2EK3A 2EK7A 2DSIA 2YBQA 1WYZA 2P2XA 2PB6A 2EKAA 2DXVA 2HR8A 2YBOA 2EMUA 2PCIA 2EL0A 2HUVA 1VA0A 2PCMA 2EL2A 2E07A 1VHVA 2ELDA 2EJJA 2OWKA 2BB3A 2ED5A 2EJKA 2EH4A 2EHCA 2P6IA 2PCHA 2E17A 2PCAA 3NUTA 2EL1A 2Z6RA 3I4TA 2OWFA 1VE2A 2QBUA 2P9DA 2DV5A 2P5CA 2DV4A 2E0KA 2EK4A 2PB4A 2E8QA 2EGSA 2E4RA 2DEKA 2E8RA 2HUQA 2EL3A 2DSHA 2EN5A 2EH2A 1PJQA 2EK2A 3ND1A 2HUTA 5HW4A 2OWUA 2E08A 2ZVBA 2ENIA 2DV3A 1PJSA 1WNGA 2E0NA 3NEIA 2E8SA 2DV7A 3HH1A 2NPNA 2EGLA 2EEQA 2EH5A 1VCEA 1PJTA 2PB5A 2DXWA 2E15A 2OWVA 2ZVCA 3KWPA 2PCGA 2ED3A 4E16A 1CBFA 2DXXA 2OWGA 3FQ6A 2P6LA
chains in the Genus database with same CATH superfamily
2E8HA 2EGBA 2DSGA 2CBFA 2P6KA 3FFYA 3NDCA 2E4NA 4H4EA 3UTDA 2E7RA 2P6DA 3UTCA 2EJZA 1V9AA 2HUXA 2PCKA 3SZUA 2EHLA 1WDEA 3F7TA 1S4DA 2ELEA 2EMRA 2P5FA 3SZOA 2E16A 2EK3A 2EK7A 2DSIA 3UV6A 4MV0A 2YBQA 3T0FA 1WYZA 2P2XA 2PB6A 2EKAA 2DXVA 2HR8A 3URKA 2YBOA 2EMUA 2PCIA 4MUXA 2EL0A 4EB3A 2HUVA 1VA0A 2PCMA 2EL2A 3T0GA 2E07A 1VHVA 4MV5A 2ELDA 2EJJA 2OWKA 2BB3A 3KE8A 2ED5A 2EJKA 2EH4A 2EHCA 2P6IA 2PCHA 2E17A 2PCAA 3NUTA 2EL1A 2Z6RA 3I4TA 3ZGNA 2OWFA 1VE2A 4H4DA 2QBUA 2P9DA 2DV5A 2P5CA 2DV4A 3UV3A 2E0KA 2EK4A 2PB4A 2E8QA 3TIXB 2EGSA 4MUYA 2E4RA 2DEKA 2E8RA 2HUQA 2EL3A 3KEFA 2DSHA 2EN5A 2EH2A 3UWMA 1PJQA 2EK2A 3ND1A 3ZGLA 2HUTA 2KYYA 5HW4A 2OWUA 2E08A 2ZVBA 2ENIA 4N7BA 2DV3A 3DNFA 1PJSA 1WNGA 2E0NA 3NEIA 4H4CA 2E8SA 2DV7A 3HH1A 2NPNA 2EGLA 2EEQA 2EH5A 1VCEA 1PJTA 2PB5A 2DXWA 2E15A 3SZLA 3LMMA 2OWVA 2ZVCA 3KWPA 2PCGA 3KELA 3KEMA 3UV7A 2ED3A 4E16A 1CBFA 3KE9A 2DXXA 2OWGA 3FQ6A 2P6LA
chains in the Genus database with same CATH topology
2E8HA 2EGBA 2DSGA 2CBFA 2P6KA 3FFYA 3NDCA 2E4NA 4H4EA 3UTDA 2E7RA 2P6DA 3UTCA 2EJZA 1V9AA 2HUXA 2PCKA 3SZUA 2EHLA 1WDEA 3F7TA 1S4DA 2ELEA 2EMRA 2P5FA 3SZOA 2E16A 2EK3A 2EK7A 2DSIA 3UV6A 4MV0A 2YBQA 3T0FA 1WYZA 2P2XA 2PB6A 2EKAA 2DXVA 2HR8A 3URKA 2YBOA 2EMUA 2PCIA 4MUXA 2EL0A 4EB3A 2HUVA 1VA0A 2PCMA 2EL2A 3T0GA 2E07A 1VHVA 4MV5A 2ELDA 2EJJA 2OWKA 2BB3A 3KE8A 2ED5A 2EJKA 2EH4A 2EHCA 2P6IA 2PCHA 2E17A 2PCAA 3NUTA 2EL1A 2Z6RA 3I4TA 3ZGNA 2OWFA 1VE2A 4H4DA 2QBUA 2P9DA 2DV5A 2P5CA 2DV4A 3UV3A 2E0KA 2EK4A 2PB4A 2E8QA 3TIXB 2EGSA 4MUYA 2E4RA 2DEKA 2E8RA 2HUQA 2EL3A 3KEFA 2DSHA 2EN5A 2EH2A 3UWMA 1PJQA 2EK2A 3ND1A 3ZGLA 2HUTA 2KYYA 5HW4A 2OWUA 2E08A 2ZVBA 2ENIA 4N7BA 2DV3A 3DNFA 1PJSA 1WNGA 2E0NA 3NEIA 4H4CA 2E8SA 2DV7A 3HH1A 2NPNA 2EGLA 2EEQA 2EH5A 1VCEA 1PJTA 2PB5A 2DXWA 2E15A 3SZLA 3LMMA 2OWVA 2ZVCA 3KWPA 2PCGA 3KELA 3KEMA 3UV7A 2ED3A 4E16A 1CBFA 3KE9A 2DXXA 2OWGA 3FQ6A 2P6LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E8H A;  2EGB A;  2DSG A;  2CBF A;  2P6K A;  3FFY A;  3NDC A;  2E4N A;  2E7R A;  2P6D A;  2EJZ A;  1V9A A;  2HUX A;  2PCK A;  2EHL A;  1WDE A;  1S4D A;  2ELE A;  2EMR A;  2P5F A;  2E16 A;  2EK3 A;  2EK7 A;  2DSI A;  2YBQ A;  1WYZ A;  2P2X A;  2PB6 A;  2EKA A;  2DXV A;  2HR8 A;  2YBO A;  2EMU A;  2PCI A;  2EL0 A;  2HUV A;  1VA0 A;  2PCM A;  2EL2 A;  2E07 A;  1VHV A;  2ELD A;  2EJJ A;  2OWK A;  2BB3 A;  2ED5 A;  2EJK A;  2EH4 A;  2EHC A;  2P6I A;  2PCH A;  2E17 A;  2PCA A;  3NUT A;  2EL1 A;  2Z6R A;  3I4T A;  2OWF A;  1VE2 A;  2QBU A;  2P9D A;  2DV5 A;  2P5C A;  2DV4 A;  2E0K A;  2EK4 A;  2PB4 A;  2E8Q A;  2EGS A;  2E4R A;  2DEK A;  2E8R A;  2HUQ A;  2EL3 A;  2DSH A;  2EN5 A;  2EH2 A;  1PJQ A;  2EK2 A;  3ND1 A;  2HUT A;  5HW4 A;  2OWU A;  2E08 A;  2ZVB A;  2ENI A;  2DV3 A;  1PJS A;  1WNG A;  2E0N A;  3NEI A;  2E8S A;  2DV7 A;  3HH1 A;  2NPN A;  2EGL A;  2EEQ A;  2EH5 A;  1VCE A;  1PJT A;  2PB5 A;  2DXW A;  2E15 A;  2OWV A;  2ZVC A;  3KWP A;  2PCG A;  2ED3 A;  4E16 A;  1CBF A;  2DXX A;  2OWG A;  3FQ6 A;  2P6L A; 
#chains in the Genus database with same CATH topology
 2E8H A;  2EGB A;  2DSG A;  2CBF A;  2P6K A;  3FFY A;  3NDC A;  2E4N A;  4H4E A;  3UTD A;  2E7R A;  2P6D A;  3UTC A;  2EJZ A;  1V9A A;  2HUX A;  2PCK A;  3SZU A;  2EHL A;  1WDE A;  3F7T A;  1S4D A;  2ELE A;  2EMR A;  2P5F A;  3SZO A;  2E16 A;  2EK3 A;  2EK7 A;  2DSI A;  3UV6 A;  4MV0 A;  2YBQ A;  3T0F A;  1WYZ A;  2P2X A;  2PB6 A;  2EKA A;  2DXV A;  2HR8 A;  3URK A;  2YBO A;  2EMU A;  2PCI A;  4MUX A;  2EL0 A;  4EB3 A;  2HUV A;  1VA0 A;  2PCM A;  2EL2 A;  3T0G A;  2E07 A;  1VHV A;  4MV5 A;  2ELD A;  2EJJ A;  2OWK A;  2BB3 A;  3KE8 A;  2ED5 A;  2EJK A;  2EH4 A;  2EHC A;  2P6I A;  2PCH A;  2E17 A;  2PCA A;  3NUT A;  2EL1 A;  2Z6R A;  3I4T A;  3ZGN A;  2OWF A;  1VE2 A;  4H4D A;  2QBU A;  2P9D A;  2DV5 A;  2P5C A;  2DV4 A;  3UV3 A;  2E0K A;  2EK4 A;  2PB4 A;  2E8Q A;  3TIX B;  2EGS A;  4MUY A;  2E4R A;  2DEK A;  2E8R A;  2HUQ A;  2EL3 A;  3KEF A;  2DSH A;  2EN5 A;  2EH2 A;  3UWM A;  1PJQ A;  2EK2 A;  3ND1 A;  3ZGL A;  2HUT A;  2KYY A;  5HW4 A;  2OWU A;  2E08 A;  2ZVB A;  2ENI A;  4N7B A;  2DV3 A;  3DNF A;  1PJS A;  1WNG A;  2E0N A;  3NEI A;  4H4C A;  2E8S A;  2DV7 A;  3HH1 A;  2NPN A;  2EGL A;  2EEQ A;  2EH5 A;  1VCE A;  1PJT A;  2PB5 A;  2DXW A;  2E15 A;  3SZL A;  3LMM A;  2OWV A;  2ZVC A;  3KWP A;  2PCG A;  3KEL A;  3KEM A;  3UV7 A;  2ED3 A;  4E16 A;  1CBF A;  3KE9 A;  2DXX A;  2OWG A;  3FQ6 A;  2P6L A; 
#chains in the Genus database with same CATH homology
 2E8H A;  2EGB A;  2DSG A;  2CBF A;  2P6K A;  3FFY A;  3NDC A;  2E4N A;  4H4E A;  3UTD A;  2E7R A;  2P6D A;  3UTC A;  2EJZ A;  1V9A A;  2HUX A;  2PCK A;  3SZU A;  2EHL A;  1WDE A;  3F7T A;  1S4D A;  2ELE A;  2EMR A;  2P5F A;  3SZO A;  2E16 A;  2EK3 A;  2EK7 A;  2DSI A;  3UV6 A;  4MV0 A;  2YBQ A;  3T0F A;  1WYZ A;  2P2X A;  2PB6 A;  2EKA A;  2DXV A;  2HR8 A;  3URK A;  2YBO A;  2EMU A;  2PCI A;  4MUX A;  2EL0 A;  4EB3 A;  2HUV A;  1VA0 A;  2PCM A;  2EL2 A;  3T0G A;  2E07 A;  1VHV A;  4MV5 A;  2ELD A;  2EJJ A;  2OWK A;  2BB3 A;  3KE8 A;  2ED5 A;  2EJK A;  2EH4 A;  2EHC A;  2P6I A;  2PCH A;  2E17 A;  2PCA A;  3NUT A;  2EL1 A;  2Z6R A;  3I4T A;  3ZGN A;  2OWF A;  1VE2 A;  4H4D A;  2QBU A;  2P9D A;  2DV5 A;  2P5C A;  2DV4 A;  3UV3 A;  2E0K A;  2EK4 A;  2PB4 A;  2E8Q A;  3TIX B;  2EGS A;  4MUY A;  2E4R A;  2DEK A;  2E8R A;  2HUQ A;  2EL3 A;  3KEF A;  2DSH A;  2EN5 A;  2EH2 A;  3UWM A;  1PJQ A;  2EK2 A;  3ND1 A;  3ZGL A;  2HUT A;  2KYY A;  5HW4 A;  2OWU A;  2E08 A;  2ZVB A;  2ENI A;  4N7B A;  2DV3 A;  3DNF A;  1PJS A;  1WNG A;  2E0N A;  3NEI A;  4H4C A;  2E8S A;  2DV7 A;  3HH1 A;  2NPN A;  2EGL A;  2EEQ A;  2EH5 A;  1VCE A;  1PJT A;  2PB5 A;  2DXW A;  2E15 A;  3SZL A;  3LMM A;  2OWV A;  2ZVC A;  3KWP A;  2PCG A;  3KEL A;  3KEM A;  3UV7 A;  2ED3 A;  4E16 A;  1CBF A;  3KE9 A;  2DXX A;  2OWG A;  3FQ6 A;  2P6L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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