1WNUA

Structure of archaeal trans-editing protein alax in complex with l-serine
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
154
structure length
154
Chain Sequence
MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords alanyl-tRNA synthetase
publication title Molecular basis of alanine discrimination in editing site
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 44
structure length 154
sequence length 154
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-08-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.20 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 1wnuA02
3.30.980.10 Alpha Beta 2-Layer Sandwich Threonyl-tRNA Synthetase; Chain A, domain 2 Threonyl-trna Synthetase; Chain A, domain 2 1wnuA01
1TKEA 1QF6A 1TJEA 1V7OA 1NYRA 2ZZFA 1V4PA 3WQZA 1WXOA 1WNUA 3KEWA 3RHUA 2ZTGA 2ZZGA 1NYQA 1TKYA 2E1BA 1TKGA 3RFNA 2ZZEA
chains in the Genus database with same CATH superfamily
3I8EA 2I05A 3ZTYA 3E0CA 4E54A 3ZX4A 1V4PA 1WNUA 4AREA 4E5ZA 3I7PA 4XR2A 1WZCA 4TZ4A 4AR1A 3EI4A 2ZTGA 1TKYA 3ZUPA 3ZW7A 2ZOSA 1TKEA 1QF6A 1XVIA 1TJEA 1NYRA 2IUUA 3WQZA 4A09A 2B5LA 3KEWA 3RHUA 2B5MA 4CI3A 3EI3A 2ZZGA 2E1BA 4A08A 1TKGA 4CI2A 4CI1A 4A11A 3ZWDA 2IUSA 4ARFA 2Y50A 1WXOA 2Y6IA 3I7LA 3ZWKA 2I06A 3EI1A 3I8CA 4A0BA 1NYQA 3I7HA 3EI2A 4XR3A 5FQDA 3RFNA 3I7OA 4XR1A 1ECRA 4AR9A 3I89A 3I7KA 4AR8A 2Y3UA 1V7OA 2ZZFA 4A0AA 3ZX5A 2EWJA 2IUTA 3ZU6A 4XR0A 3I7NA 2HYEA 3ZTWA 2ZZEA
chains in the Genus database with same CATH topology
4A11A 4XR1A 1ECRA 1TKEA 2I05A 1QF6A 3I8EA 3I89A 4AR9A 3I7KA 3E0CA 2IUSA 4AR8A 4E54A 5FQDA 4ARFA 1TJEA 2Y3UA 1V7OA 1NYRA 2ZZFA 2IUUA 1V4PA 2Y50A 3WQZA 1WXOA 4A0AA 2B5LA 2Y6IA 1WNUA 2EWJA 2IUTA 3KEWA 3I7LA 4AREA 2I06A 3EI1A 4E5ZA 3I8CA 3RHUA 3I7PA 4XR2A 4TZ4A 4XR0A 2B5MA 4AR1A 3EI4A 4CI3A 2ZTGA 3EI3A 4A0BA 2ZZGA 1NYQA 3I7NA 2HYEA 1TKYA 2E1BA 4A08A 1TKGA 3I7HA 3EI2A 4XR3A 4CI2A 3RFNA 3I7OA 4A09A 2ZZEA 4CI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TKE A;  1QF6 A;  1TJE A;  1V7O A;  1NYR A;  2ZZF A;  1V4P A;  3WQZ A;  1WXO A;  1WNU A;  3KEW A;  3RHU A;  2ZTG A;  2ZZG A;  1NYQ A;  1TKY A;  2E1B A;  1TKG A;  3RFN A;  2ZZE A; 
#chains in the Genus database with same CATH topology
 3I8E A;  2I05 A;  3ZTY A;  3E0C A;  4E54 A;  3ZX4 A;  1V4P A;  1WNU A;  4ARE A;  4E5Z A;  3I7P A;  4XR2 A;  1WZC A;  4TZ4 A;  4AR1 A;  3EI4 A;  2ZTG A;  1TKY A;  3ZUP A;  3ZW7 A;  2ZOS A;  1TKE A;  1QF6 A;  1XVI A;  1TJE A;  1NYR A;  2IUU A;  3WQZ A;  4A09 A;  2B5L A;  3KEW A;  3RHU A;  2B5M A;  4CI3 A;  3EI3 A;  2ZZG A;  2E1B A;  4A08 A;  1TKG A;  4CI2 A;  4CI1 A;  4A11 A;  3ZWD A;  2IUS A;  4ARF A;  2Y50 A;  1WXO A;  2Y6I A;  3I7L A;  3ZWK A;  2I06 A;  3EI1 A;  3I8C A;  4A0B A;  1NYQ A;  3I7H A;  3EI2 A;  4XR3 A;  5FQD A;  3RFN A;  3I7O A;  4XR1 A;  1ECR A;  4AR9 A;  3I89 A;  3I7K A;  4AR8 A;  2Y3U A;  1V7O A;  2ZZF A;  4A0A A;  3ZX5 A;  2EWJ A;  2IUT A;  3ZU6 A;  4XR0 A;  3I7N A;  2HYE A;  3ZTW A;  2ZZE A; 
#chains in the Genus database with same CATH homology
 4A11 A;  4XR1 A;  1ECR A;  1TKE A;  2I05 A;  1QF6 A;  3I8E A;  3I89 A;  4AR9 A;  3I7K A;  3E0C A;  2IUS A;  4AR8 A;  4E54 A;  5FQD A;  4ARF A;  1TJE A;  2Y3U A;  1V7O A;  1NYR A;  2ZZF A;  2IUU A;  1V4P A;  2Y50 A;  3WQZ A;  1WXO A;  4A0A A;  2B5L A;  2Y6I A;  1WNU A;  2EWJ A;  2IUT A;  3KEW A;  3I7L A;  4ARE A;  2I06 A;  3EI1 A;  4E5Z A;  3I8C A;  3RHU A;  3I7P A;  4XR2 A;  4TZ4 A;  4XR0 A;  2B5M A;  4AR1 A;  3EI4 A;  4CI3 A;  2ZTG A;  3EI3 A;  4A0B A;  2ZZG A;  1NYQ A;  3I7N A;  2HYE A;  1TKY A;  2E1B A;  4A08 A;  1TKG A;  3I7H A;  3EI2 A;  4XR3 A;  4CI2 A;  3RFN A;  3I7O A;  4A09 A;  2ZZE A;  4CI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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